Wall clock time and date at job start Tue Mar 31 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39748 * 125.84189 * 2 1 4 4 C 1.36105 * 107.83131 * 180.02562 * 3 2 1 5 5 N 1.39477 * 126.21931 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99822 * 0.02562 * 5 4 3 7 7 O 1.21281 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99812 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.46824 * 60.00142 * 8 6 5 10 10 C 1.53002 * 109.46909 * 300.00096 * 8 6 5 11 11 O 1.42899 * 109.46928 * 180.02562 * 8 6 5 12 12 C 1.35756 * 116.99609 * 204.89080 * 11 8 6 13 13 C 1.38968 * 119.90451 * 174.26738 * 12 11 8 14 14 C 1.37731 * 120.09593 * 179.72296 * 13 12 11 15 15 C 1.39749 * 119.90349 * 0.55265 * 14 13 12 16 16 C 1.43205 * 120.09555 * 179.70286 * 15 14 13 17 17 N 9.80161 * 137.64976 * 157.64582 * 5 1 2 18 18 C 1.39759 * 119.81473 * 359.72234 * 15 14 13 19 19 C 1.37740 * 119.90117 * 0.02562 * 18 15 14 20 20 N 1.35264 * 107.56670 * 0.02562 * 4 3 2 21 21 C 1.46496 * 126.04644 * 180.02562 * 20 4 3 22 22 C 1.50700 * 109.47279 * 270.00075 * 21 20 4 23 23 H 1.08004 * 119.99867 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00089 * 180.02562 * 22 21 20 25 25 N 1.31514 * 120.00050 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99955 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.46857 * 90.00252 * 26 24 22 28 28 H 1.48500 * 109.47160 * 209.99934 * 26 24 22 29 29 H 1.48497 * 109.47304 * 330.00432 * 26 24 22 30 30 N 1.30848 * 125.83380 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46978 * 270.02146 * 1 2 3 32 32 H 1.09006 * 109.47138 * 30.01448 * 1 2 3 33 33 H 1.08999 * 109.47473 * 150.01693 * 1 2 3 34 34 H 1.08001 * 126.08562 * 0.03288 * 3 2 1 35 35 H 0.97003 * 119.99932 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47103 * 299.99257 * 10 8 6 37 37 H 1.08999 * 109.47273 * 60.00212 * 10 8 6 38 38 H 1.09009 * 109.46559 * 180.02562 * 10 8 6 39 39 H 1.08009 * 119.94677 * 359.97438 * 13 12 11 40 40 H 1.08005 * 120.04594 * 180.25592 * 14 13 12 41 41 H 1.07995 * 120.05228 * 179.97438 * 18 15 14 42 42 H 1.07993 * 119.95344 * 179.97438 * 19 18 15 43 43 H 1.09004 * 109.47225 * 30.00393 * 21 20 4 44 44 H 1.08997 * 109.47147 * 149.99861 * 21 20 4 45 45 H 0.96998 * 119.99816 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1328 0.0000 4 6 3.6196 0.7120 -0.0006 5 7 4.7513 1.5273 -0.0003 6 6 4.6157 2.8683 0.0012 7 8 3.5097 3.3660 0.0018 8 6 5.8385 3.7492 0.0021 9 1 6.4335 3.5456 -0.8881 10 6 6.6739 3.4607 1.2510 11 8 5.4374 5.1207 0.0042 12 6 6.3175 6.0209 -0.5038 13 6 5.9445 7.3525 -0.6418 14 6 6.8362 8.2702 -1.1515 15 6 8.1136 7.8584 -1.5409 16 6 9.0417 8.8079 -2.0773 17 7 9.7787 9.5574 -2.5130 18 6 8.4826 6.5172 -1.4059 19 6 7.5865 5.6070 -0.8903 20 7 3.6091 -0.6406 -0.0015 21 6 4.7869 -1.5118 -0.0018 22 6 5.1911 -1.8095 -1.4228 23 1 4.6273 -1.3913 -2.2435 24 6 6.2807 -2.6159 -1.6750 25 7 6.6337 -2.8754 -2.9150 26 14 7.2563 -3.3388 -0.2554 27 1 6.6818 -4.6556 0.1201 28 1 8.6720 -3.5157 -0.6670 29 1 7.1904 -2.4198 0.9092 30 7 2.2730 -1.0608 -0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8899 -0.5141 33 1 -0.3634 -0.8901 -0.5136 34 1 1.9902 2.1596 0.0005 35 1 5.6358 1.1292 -0.0004 36 1 6.0789 3.6643 2.1412 37 1 6.9799 2.4145 1.2498 38 1 7.5582 4.0982 1.2519 39 1 4.9554 7.6689 -0.3450 40 1 6.5469 9.3057 -1.2544 41 1 9.4686 6.1947 -1.7060 42 1 7.8706 4.5704 -0.7860 43 1 5.6082 -1.0127 0.5126 44 1 4.5496 -2.4437 0.5113 45 1 7.4005 -3.4424 -3.0924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058226757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:06 Heat of formation + Delta-G solvation = 70.342647 kcal Electronic energy + Delta-G solvation = -29866.080016 eV Core-core repulsion = 25658.565906 eV Total energy + Delta-G solvation = -4207.514110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.32774 -40.73990 -39.41773 -38.12388 -36.40022 -35.00883 -33.89414 -32.77227 -32.19656 -31.46730 -30.59076 -29.56905 -28.35254 -26.40123 -25.40104 -23.75355 -23.56726 -22.56396 -21.37339 -19.98903 -19.55891 -19.26189 -18.59429 -17.46967 -17.26061 -16.54109 -16.20332 -16.13472 -15.35184 -15.13306 -14.95287 -14.61978 -14.49382 -14.22715 -14.19132 -14.00403 -13.89306 -13.58050 -13.25992 -13.11248 -12.91914 -12.84367 -12.68651 -12.61051 -12.47785 -12.36956 -12.16486 -11.96873 -11.87401 -11.45350 -11.29210 -11.20637 -10.91755 -10.62564 -10.33729 -10.06127 -9.84012 -9.66004 -9.58861 -8.93831 -8.69363 -8.06578 -7.61530 -6.40955 -4.46113 0.40309 0.81921 1.97560 2.07393 2.34365 2.56716 2.85414 2.99115 3.02447 3.07843 3.12953 3.43276 3.45377 3.54560 3.58881 4.06440 4.11633 4.28216 4.34618 4.38181 4.49802 4.65091 4.85027 4.89570 5.03425 5.15484 5.18327 5.21527 5.46007 5.49919 5.55749 5.66323 5.75779 5.85653 5.93773 5.96093 5.99245 6.07693 6.13092 6.20169 6.25985 6.52459 6.64092 6.82905 7.11535 7.17524 7.30588 7.39290 7.62960 8.00128 8.17676 8.46494 8.65217 9.13211 10.71121 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.002578 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.890849 B =10857.018689 C =13028.681023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.056 3.944 3 C -0.289 4.289 4 C 0.304 3.696 5 N -0.634 5.634 6 C 0.524 3.476 7 O -0.488 6.488 8 C 0.071 3.929 9 H 0.111 0.889 10 C -0.181 4.181 11 O -0.276 6.276 12 C 0.166 3.834 13 C -0.149 4.149 14 C -0.028 4.028 15 C -0.075 4.075 16 C 0.260 3.740 17 N -0.426 5.426 18 C -0.024 4.024 19 C -0.216 4.216 20 N -0.342 5.342 21 C 0.229 3.771 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.081 3.919 25 N -0.882 5.882 26 Si 0.873 3.127 27 H -0.269 1.269 28 H -0.279 1.279 29 H -0.265 1.265 30 N -0.280 5.280 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.164 0.836 35 H 0.416 0.584 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 16.820 8.345 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C -0.321 4.321 4 C 0.082 3.918 5 N -0.283 5.283 6 C 0.309 3.691 7 O -0.359 6.359 8 C 0.011 3.989 9 H 0.129 0.871 10 C -0.239 4.239 11 O -0.187 6.187 12 C 0.119 3.881 13 C -0.168 4.168 14 C -0.049 4.049 15 C -0.079 4.079 16 C -0.055 4.055 17 N -0.102 5.102 18 C -0.045 4.045 19 C -0.234 4.234 20 N -0.127 5.127 21 C 0.110 3.890 22 C -0.585 4.585 23 H 0.100 0.900 24 C -0.124 4.124 25 N -0.518 5.518 26 Si 0.699 3.301 27 H -0.194 1.194 28 H -0.205 1.205 29 H -0.190 1.190 30 N -0.105 5.105 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.181 0.819 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.161 0.839 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.703 16.946 7.632 18.663 hybrid contribution 1.217 -0.458 0.557 1.414 sum 2.919 16.488 8.189 18.639 Atomic orbital electron populations 1.20046 0.87315 1.02708 1.02165 1.22062 0.96654 0.90887 1.01309 1.21296 0.88946 1.00613 1.21260 1.17804 0.87776 0.83048 1.03140 1.42518 1.08489 1.05014 1.72250 1.19840 0.90484 0.81457 0.77362 1.90693 1.26073 1.73394 1.45780 1.22180 0.94324 0.80451 1.01985 0.87136 1.22424 1.00480 1.03951 0.97035 1.86192 1.41575 1.15085 1.75887 1.19356 0.88250 0.89890 0.90604 1.20395 1.01638 0.89886 1.04885 1.20975 0.90572 0.99820 0.93499 1.15918 0.92600 0.90845 1.08540 1.25727 0.93241 0.93277 0.93259 1.81351 1.09505 1.09550 1.09814 1.20967 0.99367 0.90518 0.93624 1.21314 0.93727 1.01423 1.06955 1.48917 1.06261 1.01884 1.55663 1.19956 0.79231 0.90062 0.99749 1.21186 1.14292 1.32785 0.90282 0.90013 1.24828 0.96627 0.95189 0.95787 1.69869 1.26832 1.36443 1.18644 0.86914 0.80026 0.80772 0.82396 1.19446 1.20457 1.19018 1.77392 0.85720 1.21693 1.25684 0.91242 0.90941 0.91328 0.81912 0.74735 0.90144 0.89668 0.90005 0.83703 0.84186 0.84502 0.83877 0.94320 0.93085 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.00 0.38 -0.51 16 2 C 0.06 1.06 7.21 -82.45 -0.59 0.47 16 3 C -0.29 -5.54 9.58 -39.78 -0.38 -5.92 16 4 C 0.30 5.88 7.66 -153.15 -1.17 4.71 16 5 N -0.63 -9.64 5.31 -11.46 -0.06 -9.71 16 6 C 0.52 7.30 7.20 -10.98 -0.08 7.22 16 7 O -0.49 -8.37 13.63 -14.35 -0.20 -8.57 16 8 C 0.07 0.67 2.64 -27.88 -0.07 0.60 16 9 H 0.11 0.84 6.30 -51.93 -0.33 0.51 16 10 C -0.18 -1.27 9.06 37.16 0.34 -0.93 16 11 O -0.28 -2.89 9.32 -38.89 -0.36 -3.25 16 12 C 0.17 1.39 6.61 -39.04 -0.26 1.13 16 13 C -0.15 -1.07 9.97 -39.50 -0.39 -1.46 16 14 C -0.03 -0.17 9.75 -39.20 -0.38 -0.56 16 15 C -0.08 -0.53 5.74 -106.84 -0.61 -1.15 16 16 C 0.26 2.36 15.33 -22.41 -0.34 2.01 16 17 N -0.43 -4.95 18.55 41.91 0.78 -4.17 16 18 C -0.02 -0.15 9.75 -39.20 -0.38 -0.54 16 19 C -0.22 -1.46 8.21 -39.50 -0.32 -1.78 16 20 N -0.34 -7.40 3.60 -61.57 -0.22 -7.62 16 21 C 0.23 5.05 5.07 -5.20 -0.03 5.02 16 22 C -0.55 -14.23 9.94 -34.44 -0.34 -14.57 16 23 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 24 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 25 N -0.88 -24.71 13.96 55.43 0.77 -23.94 16 26 Si 0.87 18.58 27.47 -169.99 -4.67 13.91 16 27 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 29 H -0.27 -5.13 6.54 56.52 0.37 -4.76 16 30 N -0.28 -6.13 12.56 33.65 0.42 -5.70 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.16 3.04 5.83 -52.49 -0.31 2.73 16 35 H 0.42 5.46 7.38 -40.82 -0.30 5.16 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.52 7.56 -51.93 -0.39 0.12 16 38 H 0.08 0.43 6.90 -51.92 -0.36 0.07 16 39 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.14 0.58 8.06 -52.48 -0.42 0.15 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.75 5.40 -52.49 -0.28 0.46 16 43 H 0.04 0.76 6.56 -51.93 -0.34 0.42 16 44 H 0.05 1.14 7.57 -51.93 -0.39 0.74 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -34.09 391.40 -7.64 -41.73 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.25 Total: 5.68 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -4.75 Total: -4.26 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 1.69 Total: -51.14 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.56 Total: -11.82 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.67 Total: 13.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.09 -7.64 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.077 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds