Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39717 * 125.77324 * 2 1 4 4 C 1.36174 * 107.85559 * 179.73624 * 3 2 1 5 5 N 1.39315 * 126.26584 * 180.26349 * 4 3 2 6 6 C 1.34778 * 119.99818 * 0.14761 * 5 4 3 7 7 O 1.21581 * 120.00233 * 0.02562 * 6 5 4 8 8 C 1.47528 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.29051 * 125.85818 * 359.69113 * 8 6 5 10 10 O 1.41393 * 112.87469 * 179.54521 * 9 8 6 11 11 C 1.44210 * 107.53079 * 17.89461 * 10 9 8 12 12 H 1.09003 * 110.97246 * 92.50771 * 11 10 9 13 13 C 1.50698 * 110.97465 * 216.27892 * 11 10 9 14 14 C 1.38233 * 119.99888 * 32.08674 * 13 11 10 15 15 C 1.38237 * 119.99992 * 179.78604 * 14 13 11 16 16 C 1.38239 * 119.99998 * 0.43952 * 15 14 13 17 17 C 1.38239 * 119.99591 * 359.80949 * 16 15 14 18 18 C 1.38229 * 120.00122 * 359.97438 * 17 16 15 19 19 C 1.51680 * 125.86558 * 180.02562 * 8 6 5 20 20 N 1.35817 * 107.46911 * 0.39131 * 4 3 2 21 21 C 1.46500 * 126.09620 * 179.87336 * 20 4 3 22 22 C 1.50706 * 109.46953 * 269.71053 * 21 20 4 23 23 H 1.07999 * 120.00193 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99398 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99350 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 120.00608 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47326 * 270.00340 * 26 24 22 28 28 H 1.48506 * 109.46545 * 30.00090 * 26 24 22 29 29 H 1.48498 * 109.47210 * 149.99801 * 26 24 22 30 30 N 1.30839 * 125.77548 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47205 * 269.99199 * 1 2 3 32 32 H 1.08994 * 109.47213 * 29.99969 * 1 2 3 33 33 H 1.09005 * 109.46753 * 149.99426 * 1 2 3 34 34 H 1.07997 * 126.07141 * 359.97438 * 3 2 1 35 35 H 0.96995 * 120.00056 * 180.15207 * 5 4 3 36 36 H 1.08004 * 120.00222 * 359.97438 * 14 13 11 37 37 H 1.08005 * 120.00121 * 180.26947 * 15 14 13 38 38 H 1.07992 * 119.99936 * 179.83377 * 16 15 14 39 39 H 1.08004 * 119.99231 * 179.97438 * 17 16 15 40 40 H 1.07996 * 119.99767 * 179.97438 * 18 17 16 41 41 H 1.09004 * 110.79172 * 282.85164 * 19 8 6 42 42 H 1.09000 * 110.79628 * 46.12295 * 19 8 6 43 43 H 1.09000 * 109.47175 * 149.71482 * 21 20 4 44 44 H 1.08993 * 109.47452 * 29.71273 * 21 20 4 45 45 H 0.97005 * 119.99661 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1336 0.0000 4 6 3.6195 0.7146 0.0060 5 7 4.7491 1.5299 0.0132 6 6 4.6125 2.8707 0.0177 7 8 3.5034 3.3688 0.0160 8 6 5.8087 3.7341 0.0259 9 7 7.0338 3.3284 0.0350 10 8 7.9651 4.3922 0.0308 11 6 7.2647 5.5844 0.4404 12 1 7.3432 5.7325 1.5175 13 6 7.7716 6.7913 -0.3063 14 6 8.2286 6.6593 -1.6042 15 6 8.6894 7.7672 -2.2907 16 6 8.7017 9.0054 -1.6760 17 6 8.2495 9.1363 -0.3763 18 6 7.7845 8.0293 0.3086 19 6 5.8099 5.2509 0.0323 20 7 3.6089 -0.6435 0.0007 21 6 4.7859 -1.5158 0.0017 22 6 5.1903 -1.8152 -1.4189 23 1 4.6272 -1.3972 -2.2402 24 6 6.2799 -2.6220 -1.6699 25 7 6.6331 -2.8829 -2.9095 26 14 7.2542 -3.3445 -0.2493 27 1 8.3456 -2.4109 0.1278 28 1 6.3545 -3.5500 0.9141 29 1 7.8370 -4.6470 -0.6605 30 7 2.2719 -1.0615 0.0005 31 1 -0.3633 -0.0001 1.0276 32 1 -0.3633 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5140 34 1 1.9873 2.1598 -0.0004 35 1 5.6340 1.1326 0.0148 36 1 8.2227 5.6913 -2.0830 37 1 9.0424 7.6649 -3.3062 38 1 9.0643 9.8703 -2.2114 39 1 8.2595 10.1036 0.1040 40 1 7.4316 8.1316 1.3241 41 1 5.5874 5.6422 -0.9605 42 1 5.1012 5.6354 0.7657 43 1 4.5475 -2.4471 0.5155 44 1 5.6074 -1.0171 0.5159 45 1 7.3999 -3.4502 -3.0862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058289396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = 103.680906 kcal Electronic energy + Delta-G solvation = -29936.845982 eV Core-core repulsion = 25730.777527 eV Total energy + Delta-G solvation = -4206.068454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30209 -40.75056 -39.44990 -38.83175 -35.08875 -33.89617 -33.55366 -32.86205 -32.18776 -31.26619 -29.62832 -29.32978 -28.52394 -26.36968 -24.89332 -24.30680 -22.96785 -22.48710 -21.47554 -20.96612 -19.93080 -19.22170 -17.71371 -17.54767 -17.19961 -16.83069 -16.33339 -16.26689 -15.57249 -15.37047 -15.09760 -14.88492 -14.51307 -14.38023 -13.95627 -13.88162 -13.74549 -13.62733 -13.25359 -13.14049 -12.84823 -12.76754 -12.64395 -12.40349 -12.24972 -11.94610 -11.91430 -11.61348 -11.43911 -11.23734 -11.18985 -10.84401 -10.66446 -10.41995 -10.25585 -10.01302 -9.83009 -9.73468 -9.29575 -9.17059 -8.85011 -8.05755 -7.65492 -6.32716 -4.37713 0.60050 0.85959 1.03083 2.19068 2.31173 2.68102 3.01436 3.10645 3.18371 3.19595 3.34252 3.43684 3.46559 3.87198 3.98466 4.15126 4.15972 4.30864 4.44731 4.64813 4.68935 4.77777 4.92529 4.98304 5.11073 5.15651 5.21170 5.31061 5.33516 5.48148 5.53837 5.67313 5.92101 5.95351 5.96645 6.05428 6.08736 6.14840 6.15651 6.17383 6.30166 6.46765 6.58486 6.65831 6.74260 7.18905 7.26896 7.36281 7.54199 7.90581 8.22835 8.45099 8.72207 9.21631 10.79440 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.002653 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.896979 B =10550.450434 C =12608.170629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.283 4.283 4 C 0.297 3.703 5 N -0.618 5.618 6 C 0.596 3.404 7 O -0.489 6.489 8 C 0.056 3.944 9 N -0.233 5.233 10 O -0.172 6.172 11 C 0.085 3.915 12 H 0.104 0.896 13 C -0.092 4.092 14 C -0.093 4.093 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.122 4.122 20 N -0.340 5.340 21 C 0.229 3.771 22 C -0.548 4.548 23 H 0.082 0.918 24 C 0.082 3.918 25 N -0.882 5.882 26 Si 0.870 3.130 27 H -0.269 1.269 28 H -0.263 1.263 29 H -0.278 1.278 30 N -0.274 5.274 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.165 0.835 35 H 0.424 0.576 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 23.235 7.316 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.315 4.315 4 C 0.076 3.924 5 N -0.265 5.265 6 C 0.379 3.621 7 O -0.359 6.359 8 C -0.139 4.139 9 N 0.024 4.976 10 O -0.194 6.194 11 C 0.026 3.974 12 H 0.121 0.879 13 C -0.093 4.093 14 C -0.112 4.112 15 C -0.137 4.137 16 C -0.132 4.132 17 C -0.139 4.139 18 C -0.121 4.121 19 C -0.161 4.161 20 N -0.126 5.126 21 C 0.110 3.890 22 C -0.586 4.586 23 H 0.100 0.900 24 C -0.123 4.123 25 N -0.518 5.518 26 Si 0.696 3.304 27 H -0.194 1.194 28 H -0.187 1.187 29 H -0.203 1.203 30 N -0.099 5.099 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.182 0.818 35 H 0.262 0.738 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.369 21.266 7.143 22.476 hybrid contribution 0.967 0.853 0.480 1.376 sum 2.336 22.119 7.623 23.512 Atomic orbital electron populations 1.20050 0.87212 1.02757 1.02195 1.22053 0.96701 0.90784 1.01521 1.21290 0.88799 1.00658 1.20777 1.17905 0.87540 0.83209 1.03771 1.42468 1.09258 1.04935 1.69856 1.16589 0.86643 0.80706 0.78187 1.90793 1.24094 1.73724 1.47291 1.25728 0.92886 0.96629 0.98636 1.78580 1.00105 1.12017 1.06910 1.91350 1.27193 1.14001 1.86856 1.22559 0.89907 0.85515 0.99406 0.87863 1.19446 1.01810 0.93119 0.94878 1.21089 0.96954 0.99377 0.93733 1.21215 0.99682 0.92576 1.00224 1.21255 0.99098 0.97622 0.95205 1.21118 0.99283 0.98554 0.94967 1.20925 0.99412 0.91802 0.99978 1.22880 0.97473 0.89287 1.06487 1.49112 1.06288 1.01716 1.55447 1.19999 0.79128 0.90018 0.99904 1.21157 1.14444 1.32791 0.90181 0.90008 1.24807 0.96520 0.95161 0.95829 1.69867 1.26728 1.36492 1.18694 0.86941 0.80944 0.79768 0.82797 1.19431 1.18743 1.20304 1.77385 0.85690 1.21721 1.25088 0.91209 0.90913 0.91279 0.81784 0.73801 0.85353 0.85613 0.85852 0.85675 0.85627 0.86845 0.86440 0.92521 0.94647 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.44 36.01 0.38 -0.50 16 2 C 0.05 1.04 7.20 -82.46 -0.59 0.45 16 3 C -0.28 -5.46 9.58 -39.77 -0.38 -5.84 16 4 C 0.30 6.06 7.68 -152.79 -1.17 4.88 16 5 N -0.62 -10.85 5.41 -12.30 -0.07 -10.92 16 6 C 0.60 9.19 7.78 -12.47 -0.10 9.10 16 7 O -0.49 -8.07 14.08 5.29 0.07 -8.00 16 8 C 0.06 0.73 7.28 -79.49 -0.58 0.15 16 9 N -0.23 -3.29 12.15 35.27 0.43 -2.86 16 10 O -0.17 -2.23 11.39 -11.37 -0.13 -2.36 16 11 C 0.08 0.80 4.01 -26.98 -0.11 0.69 16 12 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 13 C -0.09 -0.82 5.01 -104.63 -0.52 -1.35 16 14 C -0.09 -0.89 9.39 -39.58 -0.37 -1.27 16 15 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 16 C -0.11 -0.80 10.05 -39.58 -0.40 -1.20 16 17 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 18 C -0.10 -0.76 9.70 -39.59 -0.38 -1.14 16 19 C -0.12 -1.15 6.44 -26.49 -0.17 -1.32 16 20 N -0.34 -7.72 3.62 -61.46 -0.22 -7.95 16 21 C 0.23 5.39 5.09 -5.19 -0.03 5.36 16 22 C -0.55 -15.10 9.94 -34.44 -0.34 -15.44 16 23 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 24 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 25 N -0.88 -25.96 13.96 55.43 0.77 -25.19 16 26 Si 0.87 19.91 27.47 -169.99 -4.67 15.24 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 N -0.27 -6.12 12.56 33.64 0.42 -5.70 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.16 2.97 5.82 -52.49 -0.31 2.66 16 35 H 0.42 7.28 7.66 -40.82 -0.31 6.97 16 36 H 0.13 1.31 7.61 -52.48 -0.40 0.92 16 37 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.11 1.03 7.90 -51.93 -0.41 0.62 16 42 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.35 7.20 -51.93 -0.37 0.97 16 44 H 0.04 0.76 6.94 -51.93 -0.36 0.40 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -33.00 388.93 -8.75 -41.75 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.55 Total: 7.98 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -5.67 Total: -7.86 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 1.34 Total: -52.61 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.05 Total: -10.36 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.67 Total: 15.24 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.00 -8.75 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058289396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.430 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds