Wall clock time and date at job start Tue Mar 31 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47290 * 98.01792 * 3 2 1 5 5 N 1.46502 * 109.47341 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00112 * 270.00055 * 5 4 3 7 7 C 1.50698 * 109.47342 * 269.99924 * 6 5 4 8 8 H 1.08002 * 119.99895 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99961 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99550 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 120.00265 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46793 * 90.00351 * 11 9 7 13 13 H 1.48500 * 109.46917 * 210.00305 * 11 9 7 14 14 H 1.48497 * 109.46907 * 330.00275 * 11 9 7 15 15 C 1.34779 * 119.99881 * 90.00115 * 5 4 3 16 16 O 1.21284 * 119.99901 * 180.02562 * 15 5 4 17 17 C 1.50699 * 119.99769 * 359.97438 * 15 5 4 18 18 C 1.52998 * 109.46950 * 180.02562 * 17 15 5 19 19 N 1.46502 * 109.47190 * 179.97438 * 18 17 15 20 20 C 1.35860 * 119.69084 * 90.00358 * 19 18 17 21 21 N 1.29839 * 123.36122 * 179.73738 * 20 19 18 22 22 C 1.35653 * 121.61751 * 0.26456 * 21 20 19 23 23 C 1.39637 * 121.64341 * 180.02562 * 22 21 20 24 24 C 1.37668 * 119.68716 * 179.97438 * 23 22 21 25 25 C 1.38884 * 120.81759 * 359.97438 * 24 23 22 26 26 C 1.37764 * 120.56955 * 359.97438 * 25 24 23 27 27 C 1.39337 * 119.51931 * 0.04532 * 26 25 24 28 28 C 1.35339 * 119.70216 * 270.26435 * 19 18 17 29 29 O 1.21727 * 121.29800 * 359.96092 * 28 19 18 30 30 H 1.08996 * 109.47586 * 338.01389 * 3 2 1 31 31 H 1.09001 * 109.46659 * 218.01597 * 3 2 1 32 32 H 1.09005 * 109.47256 * 59.99921 * 4 3 2 33 33 H 1.09001 * 109.47110 * 299.99528 * 4 3 2 34 34 H 1.08999 * 109.47260 * 29.99828 * 6 5 4 35 35 H 1.09000 * 109.47081 * 149.99746 * 6 5 4 36 36 H 0.97001 * 120.00157 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.47090 * 60.00753 * 17 15 5 38 38 H 1.09000 * 109.47423 * 300.00203 * 17 15 5 39 39 H 1.09009 * 109.47090 * 60.00271 * 18 17 15 40 40 H 1.09005 * 109.47618 * 300.00458 * 18 17 15 41 41 H 1.08002 * 118.32324 * 0.02562 * 20 19 18 42 42 H 1.08001 * 120.15700 * 359.95091 * 23 22 21 43 43 H 1.07996 * 119.58965 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.71745 * 180.02562 * 25 24 23 45 45 H 1.08000 * 120.23865 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.2021 -1.4283 5 7 4.5829 0.2033 -1.4283 6 6 5.3144 1.4603 -1.2514 7 6 5.5651 2.0893 -2.5977 8 1 5.2143 1.6017 -3.4953 9 6 6.2423 3.2872 -2.6836 10 7 6.4607 3.8363 -3.8585 11 14 6.8485 4.1309 -1.1311 12 1 8.2219 3.6618 -0.8169 13 1 6.8631 5.6010 -1.3402 14 1 5.9421 3.8004 -0.0021 15 6 5.2578 -0.9519 -1.5909 16 8 6.4707 -0.9509 -1.5904 17 6 4.5054 -2.2450 -1.7722 18 6 5.5006 -3.3958 -1.9337 19 7 4.7691 -4.6529 -2.1094 20 6 4.4327 -5.0668 -3.3589 21 7 3.7901 -6.1696 -3.5969 22 6 3.3995 -6.9957 -2.5943 23 6 2.7088 -8.1821 -2.8497 24 6 2.3321 -8.9909 -1.8014 25 6 2.6309 -8.6422 -0.4906 26 6 3.3122 -7.4774 -0.2134 27 6 3.7023 -6.6445 -1.2601 28 6 4.4301 -5.3886 -1.0252 29 8 4.7215 -5.0277 0.1002 30 1 2.9718 -0.9520 0.3847 31 1 2.9709 0.8105 0.6329 32 1 2.7542 1.1549 -1.8131 33 1 2.7550 -0.6077 -2.0613 34 1 4.7247 2.1404 -0.6368 35 1 6.2669 1.2604 -0.7607 36 1 6.9368 4.6793 -3.9190 37 1 3.8784 -2.1789 -2.6615 38 1 3.8791 -2.4265 -0.8987 39 1 6.1273 -3.4617 -1.0442 40 1 6.1272 -3.2144 -2.8070 41 1 4.7184 -4.4491 -4.1975 42 1 2.4710 -8.4636 -3.8649 43 1 1.7976 -9.9079 -2.0007 44 1 2.3272 -9.2902 0.3182 45 1 3.5421 -7.2117 0.8078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058328647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:28 Heat of formation + Delta-G solvation = 12.774352 kcal Electronic energy + Delta-G solvation = -30225.738107 eV Core-core repulsion = 26015.727649 eV Total energy + Delta-G solvation = -4210.010458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88449 -39.65048 -38.77238 -37.73425 -36.99146 -35.52898 -34.92491 -32.92972 -31.94642 -31.17765 -30.94884 -30.28275 -28.12197 -25.63831 -25.06067 -24.16554 -23.47824 -22.23295 -21.92591 -19.19048 -18.98339 -18.71102 -17.88301 -17.56252 -16.90407 -16.49654 -16.36390 -15.71389 -15.57100 -15.35416 -15.34506 -14.97573 -14.74587 -14.29519 -14.24779 -14.12624 -13.85469 -13.61706 -13.46575 -13.09883 -12.87791 -12.64063 -12.55734 -12.35336 -12.32795 -12.16200 -12.09671 -11.87928 -11.64717 -11.44883 -11.12847 -10.92018 -10.62885 -10.50023 -10.30512 -10.27417 -10.23164 -9.67146 -9.49149 -9.30628 -8.68067 -8.37186 -8.03249 -6.17856 -4.18000 0.22078 0.49847 1.90320 2.13422 2.47789 2.63012 2.72805 3.05195 3.22568 3.27822 3.30700 3.44716 3.66883 3.72987 3.93413 4.04305 4.31090 4.36539 4.46899 4.57467 4.65547 4.73458 4.81450 4.86170 4.93557 4.97352 5.01204 5.15371 5.17409 5.28146 5.28605 5.49363 5.55741 5.65101 5.69699 5.75860 5.81808 5.94567 6.00534 6.04278 6.30012 6.44961 6.50333 6.78864 7.07017 7.42430 7.47998 7.49333 7.56646 7.93782 8.33903 8.65975 8.84886 9.41462 10.95166 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.002474 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.214856 B =11315.488012 C =12282.109596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C -0.052 4.052 4 C 0.117 3.883 5 N -0.589 5.589 6 C 0.214 3.786 7 C -0.533 4.533 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.518 3.482 16 O -0.531 6.531 17 C -0.161 4.161 18 C 0.109 3.891 19 N -0.546 5.546 20 C 0.382 3.618 21 N -0.529 5.529 22 C 0.154 3.846 23 C -0.113 4.113 24 C -0.075 4.075 25 C -0.143 4.143 26 C -0.041 4.041 27 C -0.198 4.198 28 C 0.545 3.455 29 O -0.505 6.505 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.204 0.796 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 -22.480 4.129 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.103 4.103 3 C -0.093 4.093 4 C -0.009 4.009 5 N -0.320 5.320 6 C 0.094 3.906 7 C -0.571 4.571 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.303 3.697 16 O -0.407 6.407 17 C -0.202 4.202 18 C -0.013 4.013 19 N -0.268 5.268 20 C 0.095 3.905 21 N -0.249 5.249 22 C 0.045 3.955 23 C -0.132 4.132 24 C -0.095 4.095 25 C -0.161 4.161 26 C -0.060 4.060 27 C -0.204 4.204 28 C 0.338 3.662 29 O -0.379 6.379 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.221 0.779 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.396 -22.456 4.065 24.317 hybrid contribution 0.854 0.901 1.376 1.853 sum -7.542 -21.556 5.441 23.476 Atomic orbital electron populations 1.81219 1.12983 1.09155 1.08437 1.29031 0.95045 0.92962 0.93283 1.19890 0.81584 1.06116 1.01733 1.21352 0.81616 1.04842 0.93126 1.47864 1.05036 1.08510 1.70597 1.19761 0.92584 0.79999 0.98269 1.21269 1.37423 1.06087 0.92312 0.90621 1.24852 0.95176 0.96894 0.95987 1.69885 1.41162 1.18868 1.23331 0.86877 0.80180 0.78991 0.83787 1.19863 1.21090 1.18987 1.19965 0.87901 0.84433 0.77357 1.90721 1.13589 1.86434 1.49969 1.22086 0.99736 0.93596 1.04796 1.21791 0.93656 0.79027 1.06817 1.46796 1.49683 1.22830 1.07453 1.24928 0.87275 0.91432 0.86861 1.68709 1.18698 1.04930 1.32610 1.18857 0.94859 0.94203 0.87584 1.20869 0.99233 0.92881 1.00246 1.21303 0.96893 0.98930 0.92335 1.21187 1.00537 0.97293 0.97098 1.21037 0.93756 0.92479 0.98772 1.20622 1.07000 0.97410 0.95352 1.18452 0.79410 0.84005 0.84322 1.90886 1.53639 1.71732 1.21622 0.87505 0.86562 0.88328 0.90317 0.94902 0.94127 0.92452 0.88379 0.88660 0.87200 0.87261 0.77947 0.84335 0.84953 0.85046 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.40 18.54 42.15 0.78 -5.62 16 2 C 0.21 2.53 15.43 -20.76 -0.32 2.20 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 4 C 0.12 1.41 5.17 -4.04 -0.02 1.39 16 5 N -0.59 -9.71 2.46 -175.06 -0.43 -10.14 16 6 C 0.21 4.50 4.23 -5.20 -0.02 4.48 16 7 C -0.53 -13.81 9.94 -34.44 -0.34 -14.16 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 11 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -5.63 6.54 56.52 0.37 -5.26 16 15 C 0.52 8.33 7.67 -10.99 -0.08 8.25 16 16 O -0.53 -10.78 15.56 5.55 0.09 -10.70 16 17 C -0.16 -1.78 4.58 -27.88 -0.13 -1.90 16 18 C 0.11 1.16 4.65 -4.04 -0.02 1.15 16 19 N -0.55 -5.58 2.61 -118.85 -0.31 -5.89 16 20 C 0.38 3.27 11.41 -90.17 -1.03 2.24 16 21 N -0.53 -5.42 10.37 -12.01 -0.12 -5.54 16 22 C 0.15 1.64 6.63 -84.51 -0.56 1.08 16 23 C -0.11 -0.96 10.03 -39.27 -0.39 -1.35 16 24 C -0.08 -0.51 10.00 -39.55 -0.40 -0.91 16 25 C -0.14 -1.05 10.02 -39.52 -0.40 -1.44 16 26 C -0.04 -0.40 9.68 -39.35 -0.38 -0.78 16 27 C -0.20 -2.25 5.89 -104.78 -0.62 -2.87 16 28 C 0.55 6.81 7.66 -12.44 -0.10 6.71 16 29 O -0.51 -7.56 16.33 5.16 0.08 -7.48 16 30 H 0.11 0.89 7.22 -51.93 -0.37 0.51 16 31 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 33 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 34 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 35 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.10 0.88 7.40 -51.93 -0.38 0.50 16 38 H 0.10 0.97 7.18 -51.93 -0.37 0.60 16 39 H 0.11 1.39 7.42 -51.92 -0.39 1.00 16 40 H 0.11 1.03 7.95 -51.93 -0.41 0.62 16 41 H 0.20 0.98 7.99 -52.49 -0.42 0.56 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.14 1.26 7.83 -52.49 -0.41 0.85 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -35.89 392.69 -8.49 -44.38 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.52 Total: -0.40 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -5.08 Total: 5.32 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.69 Total: -52.51 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.89 -8.49 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058328647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.158 kcal (2) G-P(sol) polarization free energy of solvation -35.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds