Wall clock time and date at job start Tue Mar 31 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35800 * 116.99768 * 2 1 4 4 C 1.38835 * 119.93234 * 0.02562 * 3 2 1 5 5 C 1.37787 * 120.15228 * 179.97438 * 4 3 2 6 6 C 1.39698 * 120.00320 * 0.02562 * 5 4 3 7 7 C 1.47607 * 120.06897 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00006 * 134.33228 * 7 6 5 9 9 N 1.34781 * 120.00336 * 314.32726 * 7 6 5 10 10 C 1.46495 * 120.00027 * 185.89962 * 9 7 6 11 11 C 1.50707 * 109.46966 * 90.00317 * 10 9 7 12 12 H 1.08002 * 119.99906 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99693 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00142 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46740 * 60.00079 * 15 13 11 17 17 H 1.48500 * 109.46747 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47005 * 299.99874 * 15 13 11 19 19 C 1.46496 * 119.99440 * 5.90013 * 9 7 6 20 20 C 1.52999 * 109.47075 * 98.12372 * 19 9 7 21 21 C 1.47200 * 109.47233 * 185.45223 * 20 19 9 22 22 N 6.75590 * 68.67805 * 338.65053 * 2 1 3 23 23 C 1.39738 * 119.85693 * 359.70305 * 6 5 4 24 24 C 1.38134 * 119.84826 * 0.54700 * 23 6 5 25 25 O 1.36010 * 119.99713 * 179.74723 * 24 23 6 26 26 C 1.42893 * 117.00026 * 359.72791 * 25 24 23 27 27 F 1.39896 * 109.47303 * 59.99955 * 26 25 24 28 28 F 1.39900 * 109.47262 * 299.99725 * 26 25 24 29 29 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47538 * 300.00595 * 1 2 3 31 31 H 1.09005 * 109.46903 * 60.00634 * 1 2 3 32 32 H 1.08000 * 119.91911 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.99320 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46707 * 209.99729 * 10 9 7 35 35 H 1.08992 * 109.47534 * 330.00405 * 10 9 7 36 36 H 0.97004 * 120.00294 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.47310 * 218.11767 * 19 9 7 38 38 H 1.08999 * 109.47509 * 338.12485 * 19 9 7 39 39 H 1.09002 * 109.47382 * 305.45130 * 20 19 9 40 40 H 1.09004 * 109.47187 * 65.44812 * 20 19 9 41 41 H 1.08007 * 120.06898 * 180.31940 * 23 6 5 42 42 H 1.09005 * 109.46703 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2879 2.3735 0.0005 5 6 1.9087 3.6036 0.0011 6 6 3.3034 3.6822 0.0005 7 6 3.9700 4.9992 0.0005 8 8 4.9014 5.2092 0.7534 9 7 3.5463 5.9690 -0.8341 10 6 4.2863 7.2298 -0.9276 11 6 5.3391 7.1160 -2.0000 12 1 5.4458 6.1966 -2.5565 13 6 6.1651 8.1861 -2.2713 14 7 6.0341 9.3061 -1.5947 15 14 7.4705 8.0448 -3.6000 16 1 6.8207 7.7536 -4.9032 17 1 8.2198 9.3233 -3.6957 18 1 8.4082 6.9454 -3.2578 19 6 2.3457 5.7621 -1.6476 20 6 1.1471 6.4250 -0.9658 21 6 -0.0804 6.1071 -1.7134 22 7 -1.0275 5.8616 -2.2912 23 6 4.0662 2.5113 0.0057 24 6 3.4376 1.2813 -0.0001 25 8 4.1771 0.1398 -0.0002 26 6 5.5984 0.2875 -0.0003 27 9 5.9941 0.9916 1.1420 28 9 5.9940 0.9918 -1.1425 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 0.2095 2.3141 0.0014 33 1 1.3168 4.5070 0.0019 34 1 3.5982 8.0372 -1.1782 35 1 4.7636 7.4428 0.0289 36 1 6.6150 10.0591 -1.7858 37 1 2.4936 6.2046 -2.6327 38 1 2.1582 4.6936 -1.7536 39 1 1.0577 6.0524 0.0547 40 1 1.2915 7.5052 -0.9467 41 1 5.1448 2.5681 0.0105 42 1 6.0660 -0.6971 -0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058332678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:27 Heat of formation + Delta-G solvation = -143.449256 kcal Electronic energy + Delta-G solvation = -32008.819715 eV Core-core repulsion = 27205.512612 eV Total energy + Delta-G solvation = -4803.307103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.122 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.40537 -47.39314 -40.86344 -39.40413 -38.55208 -36.96381 -36.62846 -35.33726 -32.92789 -31.10195 -30.60449 -30.55409 -27.96752 -27.07313 -26.21218 -24.19775 -23.75899 -22.65324 -22.17562 -19.81763 -18.65117 -18.48190 -17.97473 -17.74789 -17.69261 -16.63385 -16.51971 -16.43146 -16.07257 -15.89518 -15.26774 -14.77897 -14.58340 -14.42391 -14.32348 -14.16047 -14.02298 -13.94871 -13.69666 -13.61666 -13.33044 -12.96163 -12.72008 -12.68885 -12.48960 -12.37990 -12.10778 -12.08326 -11.84027 -11.76714 -11.37269 -11.28945 -11.10696 -10.93744 -10.83357 -10.60998 -10.21027 -9.75013 -9.21106 -8.96771 -8.47997 -8.13569 -7.88826 -6.09966 -4.14845 0.94686 1.08252 2.37884 2.66872 2.75015 2.95477 3.09562 3.30690 3.35172 3.35659 3.38581 3.51568 3.71667 4.11634 4.19668 4.41043 4.52074 4.52945 4.66625 4.77230 4.84722 4.89520 4.99783 5.05367 5.07561 5.13094 5.21897 5.25342 5.41743 5.43859 5.75264 5.80772 5.95542 6.08918 6.21865 6.28217 6.52104 6.90699 7.15870 7.32126 7.39314 7.51333 7.86008 8.14730 8.17929 8.76583 8.92973 9.50835 10.98100 Molecular weight = 354.12amu Principal moments of inertia in cm(-1) A = 0.008556 B = 0.004107 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.618024 B = 6816.146113 C = 9232.683718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.128 3.872 4 C -0.183 4.183 5 C -0.088 4.088 6 C -0.114 4.114 7 C 0.554 3.446 8 O -0.523 6.523 9 N -0.588 5.588 10 C 0.244 3.756 11 C -0.532 4.532 12 H 0.059 0.941 13 C 0.065 3.935 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.106 3.894 20 C -0.057 4.057 21 C 0.216 3.784 22 N -0.441 5.441 23 C -0.103 4.103 24 C 0.070 3.930 25 O -0.311 6.311 26 C 0.408 3.592 27 F -0.195 7.195 28 F -0.196 7.196 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.150 0.850 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.947 -17.767 3.936 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.082 3.918 4 C -0.202 4.202 5 C -0.106 4.106 6 C -0.118 4.118 7 C 0.340 3.660 8 O -0.399 6.399 9 N -0.318 5.318 10 C 0.125 3.875 11 C -0.571 4.571 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.020 4.020 20 C -0.098 4.098 21 C -0.103 4.103 22 N -0.118 5.118 23 C -0.123 4.123 24 C 0.026 3.974 25 O -0.229 6.229 26 C 0.318 3.682 27 F -0.177 7.177 28 F -0.178 7.178 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.168 0.832 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.724 -18.136 3.491 21.356 hybrid contribution 1.083 0.518 -0.590 1.338 sum -9.641 -17.617 2.900 20.291 Atomic orbital electron populations 1.23121 0.78187 1.04133 1.01581 1.86114 1.21354 1.25838 1.88545 1.18297 0.88570 0.85382 0.99586 1.20989 1.00117 0.91053 1.08018 1.21539 0.93449 0.98181 0.97451 1.19910 0.93481 0.94262 1.04121 1.17998 0.83503 0.83326 0.81153 1.90802 1.28563 1.80988 1.39559 1.48107 1.25821 1.18284 1.39632 1.19409 0.91129 0.78031 0.98882 1.21389 1.17179 0.99359 1.19175 0.92317 1.24895 0.97250 0.95122 0.96528 1.69903 1.39257 1.03321 1.40666 0.86579 0.81731 0.77402 0.81877 1.20204 1.21170 1.20119 1.21564 0.83331 1.01212 0.95927 1.20039 0.86079 1.05436 0.98266 1.29054 0.94357 0.93095 0.93751 1.81217 1.11868 1.09288 1.09416 1.21427 1.01467 0.89629 0.99741 1.17844 0.88085 0.85144 1.06301 1.86676 1.17008 1.30123 1.89107 1.23388 0.80084 0.92569 0.72174 1.93133 1.90518 1.82184 1.51851 1.93134 1.90527 1.82208 1.51897 0.88080 0.92430 0.92404 0.84076 0.83961 0.94421 0.93192 0.92569 0.88681 0.89671 0.87139 0.85883 0.83232 0.80233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.49 10.27 -33.77 -0.35 -3.84 16 3 C 0.13 1.62 6.71 -38.93 -0.26 1.36 16 4 C -0.18 -2.02 9.01 -39.53 -0.36 -2.38 16 5 C -0.09 -1.09 7.39 -39.20 -0.29 -1.38 16 6 C -0.11 -1.84 5.09 -104.97 -0.53 -2.37 16 7 C 0.55 11.01 7.26 -12.44 -0.09 10.92 16 8 O -0.52 -12.71 16.54 5.29 0.09 -12.63 16 9 N -0.59 -11.09 2.46 -176.27 -0.43 -11.53 16 10 C 0.24 5.76 5.22 -5.19 -0.03 5.73 16 11 C -0.53 -14.21 9.39 -34.44 -0.32 -14.54 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 15 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 C 0.11 1.48 4.83 -4.04 -0.02 1.46 16 20 C -0.06 -0.61 5.10 -29.52 -0.15 -0.76 16 21 C 0.22 2.52 15.38 -20.75 -0.32 2.20 16 22 N -0.44 -6.16 18.54 42.16 0.78 -5.38 16 23 C -0.10 -1.66 7.89 -39.06 -0.31 -1.97 16 24 C 0.07 0.99 6.49 -39.19 -0.25 0.74 16 25 O -0.31 -3.96 10.21 -34.43 -0.35 -4.31 16 26 C 0.41 4.28 5.98 101.05 0.60 4.88 16 27 F -0.20 -2.52 15.56 2.25 0.04 -2.49 16 28 F -0.20 -2.56 15.60 2.25 0.04 -2.52 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 31 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 32 H 0.14 1.14 6.27 -52.49 -0.33 0.81 16 33 H 0.14 1.48 3.64 -52.49 -0.19 1.29 16 34 H 0.04 0.86 7.99 -51.93 -0.41 0.45 16 35 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 38 H 0.09 1.09 5.03 -51.93 -0.26 0.83 16 39 H 0.11 0.98 6.18 -51.93 -0.32 0.66 16 40 H 0.12 1.26 8.06 -51.93 -0.42 0.84 16 41 H 0.15 2.60 5.08 -52.48 -0.27 2.34 16 42 H 0.18 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -35.14 369.77 -4.53 -39.67 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.19 Total: -0.93 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.44 Total: 6.72 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 1.08 Total: -41.47 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.61 Total: -20.77 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.07 Total: -5.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.14 -4.53 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058332678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.776 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds