Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86795 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47405 * 269.99993 * 3 2 1 5 5 H 1.48501 * 109.47098 * 30.00229 * 3 2 1 6 6 H 1.48504 * 109.47000 * 150.00010 * 3 2 1 7 7 C 1.38803 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00197 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99739 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00221 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00303 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00203 * 180.02562 * 13 11 10 15 15 C 1.53039 * 109.45903 * 155.00495 * 14 13 11 16 16 C 1.53198 * 109.31119 * 181.38668 * 15 14 13 17 17 N 1.46923 * 108.77481 * 305.35921 * 16 15 14 18 18 C 1.34772 * 120.63159 * 233.58702 * 17 16 15 19 19 O 1.21280 * 119.99839 * 185.20769 * 18 17 16 20 20 C 1.50697 * 120.00089 * 5.20953 * 18 17 16 21 21 C 1.52997 * 109.46942 * 275.43370 * 20 18 17 22 22 C 1.53004 * 109.46769 * 179.97438 * 21 20 18 23 23 C 1.52996 * 109.47260 * 60.00184 * 22 21 20 24 24 C 1.53000 * 109.47277 * 299.99942 * 23 22 21 25 25 C 1.52995 * 109.47208 * 59.99557 * 24 23 22 26 26 C 1.46932 * 118.73465 * 53.86351 * 17 16 15 27 27 C 1.53048 * 109.46117 * 275.06961 * 14 13 11 28 28 H 0.96997 * 119.99837 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47029 * 60.00562 * 10 9 7 30 30 H 1.08999 * 109.47426 * 299.99994 * 10 9 7 31 31 H 0.96995 * 119.99570 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.46192 * 35.02615 * 14 13 11 33 33 H 1.08999 * 109.50381 * 61.43207 * 15 14 13 34 34 H 1.09000 * 109.51875 * 301.34864 * 15 14 13 35 35 H 1.09003 * 109.58254 * 185.57390 * 16 15 14 36 36 H 1.08998 * 109.70412 * 65.21860 * 16 15 14 37 37 H 1.08999 * 109.46874 * 35.43482 * 20 18 17 38 38 H 1.08995 * 109.47128 * 299.99402 * 21 20 18 39 39 H 1.08998 * 109.47590 * 60.00269 * 21 20 18 40 40 H 1.08996 * 109.47570 * 300.00073 * 22 21 20 41 41 H 1.09008 * 109.46887 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.47657 * 179.97438 * 23 22 21 43 43 H 1.09007 * 109.47296 * 59.99692 * 23 22 21 44 44 H 1.09007 * 109.46754 * 300.00082 * 24 23 22 45 45 H 1.08997 * 109.47280 * 180.02562 * 24 23 22 46 46 H 1.09001 * 109.47540 * 180.02562 * 25 24 23 47 47 H 1.09004 * 109.47319 * 60.00636 * 25 24 23 48 48 H 1.08994 * 109.58952 * 65.92738 * 26 17 16 49 49 H 1.09001 * 109.58290 * 186.35203 * 26 17 16 50 50 H 1.09003 * 109.49650 * 298.56814 * 27 14 13 51 51 H 1.09000 * 109.49479 * 58.62534 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0008 12 8 6.3440 -2.2964 -0.0014 13 7 6.0457 -4.4948 -0.0011 14 6 7.4907 -4.7359 -0.0005 15 6 7.7780 -6.1101 0.6088 16 6 9.2917 -6.3441 0.6396 17 7 9.8261 -6.1618 -0.7168 18 6 10.5726 -7.1231 -1.2957 19 8 11.0864 -6.9236 -2.3760 20 6 10.7688 -8.4457 -0.6007 21 6 11.9287 -8.3337 0.3907 22 6 12.1274 -9.6764 1.0969 23 6 12.4451 -10.7558 0.0601 24 6 11.2853 -10.8678 -0.9314 25 6 11.0864 -9.5251 -1.6375 26 6 9.5363 -4.9090 -1.4277 27 6 8.0154 -4.6934 -1.4376 28 1 -0.4850 0.8400 0.0004 29 1 3.6433 -3.4318 -0.8907 30 1 3.6440 -3.4315 0.8893 31 1 5.4291 -5.2435 -0.0018 32 1 7.9871 -3.9658 0.5900 33 1 7.3027 -6.8827 0.0045 34 1 7.3833 -6.1480 1.6241 35 1 9.4976 -7.3589 0.9802 36 1 9.7604 -5.6294 1.3161 37 1 9.8578 -8.7135 -0.0654 38 1 12.8396 -8.0660 -0.1445 39 1 11.7022 -7.5651 1.1297 40 1 11.2164 -9.9439 1.6322 41 1 12.9541 -9.5968 1.8029 42 1 12.5872 -11.7123 0.5631 43 1 13.3562 -10.4884 -0.4753 44 1 10.3742 -11.1351 -0.3960 45 1 11.5114 -11.6370 -1.6697 46 1 10.2598 -9.6047 -2.3435 47 1 11.9974 -9.2577 -2.1729 48 1 10.0227 -4.0781 -0.9169 49 1 9.9038 -4.9766 -2.4517 50 1 7.5378 -5.4793 -2.0226 51 1 7.7891 -3.7228 -1.8789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058431678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -101.831774 kcal Electronic energy + Delta-G solvation = -29156.585149 eV Core-core repulsion = 25180.589290 eV Total energy + Delta-G solvation = -3975.995858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00449 -39.63823 -38.30434 -37.31486 -34.70884 -32.46358 -32.40920 -31.56396 -31.22673 -30.85757 -29.03359 -25.70106 -25.36888 -24.14723 -23.28376 -22.97555 -21.30634 -20.48752 -20.24463 -19.30333 -17.95158 -17.57804 -16.58654 -16.43863 -16.04892 -15.84282 -15.33949 -15.14877 -14.98258 -14.68460 -14.57558 -14.44540 -14.21150 -13.95808 -13.77940 -13.40879 -13.36459 -13.21039 -12.81981 -12.77342 -12.62264 -12.58359 -12.18721 -12.16020 -11.80293 -11.66864 -11.56614 -11.28804 -11.20016 -11.10832 -11.02955 -11.01457 -10.86479 -10.61869 -10.59748 -9.90484 -9.86586 -9.59422 -9.08035 -9.01900 -8.98095 -8.52837 -6.94302 -6.30908 -4.02906 2.29363 2.59735 2.72903 2.91422 3.26105 3.32170 3.48636 3.61124 3.97480 4.17018 4.20409 4.25675 4.31237 4.49967 4.57946 4.64126 4.65186 4.69697 4.74798 4.85600 4.88957 4.89979 4.95027 5.02256 5.07551 5.08225 5.08825 5.11669 5.24170 5.33884 5.39073 5.44995 5.52061 5.54219 5.57819 5.62622 5.66085 5.70023 5.72975 5.75041 5.77566 5.81411 5.97393 5.97711 6.01317 6.20265 6.49442 7.03695 7.55397 7.85356 7.92068 8.39418 8.43839 9.15230 10.78289 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.031268 B = 0.001681 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.278101 B =16648.186841 C =16878.616739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.148 3.852 15 C -0.143 4.143 16 C 0.109 3.891 17 N -0.613 5.613 18 C 0.520 3.480 19 O -0.540 6.540 20 C -0.106 4.106 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.102 4.102 26 C 0.114 3.886 27 C -0.145 4.145 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.068 0.932 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.842 -23.750 2.804 33.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.387 5.387 14 C 0.043 3.957 15 C -0.182 4.182 16 C -0.015 4.015 17 N -0.347 5.347 18 C 0.308 3.692 19 O -0.416 6.416 20 C -0.127 4.127 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.157 4.157 25 C -0.140 4.140 26 C -0.009 4.009 27 C -0.184 4.184 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.090 0.910 49 H 0.113 0.887 50 H 0.087 0.913 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 25.224 -21.954 2.225 33.514 hybrid contribution -1.363 -0.602 0.023 1.490 sum 23.861 -22.557 2.248 32.912 Atomic orbital electron populations 1.69938 1.05915 1.27781 1.48005 1.24715 0.94453 0.98967 0.93158 0.86733 0.81876 0.83277 0.79947 1.19206 1.19923 1.15941 1.22317 0.88274 0.97537 1.58865 0.89400 1.84788 1.09291 0.99990 1.97428 1.23287 0.94024 1.04446 1.05789 1.20300 0.90580 0.82335 0.74972 1.90699 1.58729 1.42177 1.47642 1.46041 1.07030 1.08081 1.77557 1.20842 0.81659 0.96957 0.96275 1.22224 0.96250 0.97220 1.02518 1.21786 0.93277 1.03030 0.83399 1.48206 1.51984 1.17805 1.16685 1.20713 0.77600 0.85380 0.85492 1.90691 1.48138 1.80950 1.21853 1.21380 1.00682 0.92743 0.97927 1.21518 0.97701 0.98153 0.97393 1.21527 1.01928 0.94294 0.97726 1.21568 0.98637 0.98726 0.97058 1.21548 0.98730 0.96959 0.98427 1.21385 1.02986 0.92986 0.96603 1.21687 0.95136 0.85111 0.98922 1.22413 0.94976 1.03572 0.97432 0.91928 0.88526 0.88481 0.76702 0.89175 0.90751 0.89631 0.88945 0.90628 0.88922 0.91136 0.91403 0.91691 0.91530 0.91889 0.91831 0.91901 0.91604 0.91671 0.90713 0.91031 0.88713 0.91333 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.65 27.74 -169.99 -4.71 16.94 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 8 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 9 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 11 C 0.53 8.90 7.81 -10.98 -0.09 8.82 16 12 O -0.52 -10.62 15.53 5.55 0.09 -10.53 16 13 N -0.73 -8.44 5.08 -53.76 -0.27 -8.71 16 14 C 0.15 1.46 2.41 -67.89 -0.16 1.30 16 15 C -0.14 -0.90 5.55 -26.61 -0.15 -1.05 16 16 C 0.11 0.62 5.81 -3.71 -0.02 0.60 16 17 N -0.61 -5.17 2.97 -172.51 -0.51 -5.69 16 18 C 0.52 5.05 6.80 -10.99 -0.07 4.98 16 19 O -0.54 -7.37 15.53 5.56 0.09 -7.28 16 20 C -0.11 -0.69 1.66 -91.77 -0.15 -0.84 16 21 C -0.11 -0.60 4.99 -26.73 -0.13 -0.73 16 22 C -0.12 -0.49 5.92 -26.73 -0.16 -0.65 16 23 C -0.12 -0.56 5.92 -26.73 -0.16 -0.72 16 24 C -0.12 -0.60 5.92 -26.73 -0.16 -0.76 16 25 C -0.10 -0.71 4.73 -26.73 -0.13 -0.83 16 26 C 0.11 1.11 6.45 -3.49 -0.02 1.09 16 27 C -0.14 -1.49 5.67 -26.39 -0.15 -1.64 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 32 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.35 5.07 -51.93 -0.26 0.09 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.46 6.52 -51.93 -0.34 0.12 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.32 7.29 -51.93 -0.38 -0.06 16 40 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 42 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 44 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.09 1.05 7.04 -51.93 -0.37 0.69 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 408.22 15.07 6.15 6.15 Total: -1.00 -35.22 408.22 -10.35 -45.57 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.84 Total: -0.84 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.12 Total: -4.47 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.01 Total: -40.01 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.17 Total: -17.81 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.22 -10.35 -45.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058431678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.263 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds