Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29407 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48499 * 109.47570 * 240.00110 * 3 2 1 5 5 H 1.48502 * 109.47067 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47224 * 119.99741 * 3 2 1 7 7 C 1.46556 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00552 * 180.02562 * 7 2 1 9 9 O 1.22317 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.35566 * 117.00336 * 185.25834 * 9 7 2 11 11 C 1.38765 * 120.16202 * 7.31025 * 10 9 7 12 12 C 1.38099 * 120.07790 * 180.27416 * 11 10 9 13 13 C 1.38538 * 120.41222 * 359.74379 * 12 11 10 14 14 C 1.37886 * 120.33076 * 359.97438 * 13 12 11 15 15 C 1.39690 * 119.90690 * 0.02562 * 14 13 12 16 16 C 1.47270 * 120.20111 * 179.97438 * 15 14 13 17 17 N 1.29889 * 119.99727 * 180.02562 * 16 15 14 18 18 N 1.40106 * 119.99736 * 180.02562 * 17 16 15 19 19 C 1.34773 * 119.99693 * 180.02562 * 18 17 16 20 20 O 1.21587 * 120.00332 * 359.97438 * 19 18 17 21 21 C 1.47789 * 119.99817 * 180.02562 * 19 18 17 22 22 C 1.39626 * 120.14597 * 353.48649 * 21 19 18 23 23 C 1.37928 * 119.84902 * 180.02562 * 22 21 19 24 24 C 1.38382 * 120.15020 * 359.72359 * 23 22 21 25 25 C 1.38347 * 120.29484 * 0.55542 * 24 23 22 26 26 C 1.37973 * 120.15005 * 359.44563 * 25 24 23 27 27 N 1.48014 * 120.07714 * 180.29837 * 26 25 24 28 28 O 1.31705 * 119.99703 * 129.67346 * 27 26 25 29 29 O 1.31697 * 120.00275 * 309.67294 * 27 26 25 30 30 H 0.96998 * 120.00211 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.95997 * 0.02562 * 11 10 9 32 32 H 1.07994 * 119.79030 * 179.76398 * 12 11 10 33 33 H 1.08004 * 119.83448 * 180.02562 * 13 12 11 34 34 H 1.07997 * 120.04650 * 179.97438 * 14 13 12 35 35 H 1.08000 * 119.99948 * 359.97438 * 16 15 14 36 36 H 0.96999 * 119.99700 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.07638 * 359.97438 * 22 21 19 38 38 H 1.08005 * 119.92502 * 179.97438 * 23 22 21 39 39 H 1.07998 * 119.85495 * 180.27382 * 24 23 22 40 40 H 1.08000 * 119.92616 * 179.72675 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2280 1.6178 0.0000 4 1 3.0818 1.6966 -1.2125 5 1 1.2630 2.7465 0.0006 6 1 3.0818 1.6965 1.2126 7 6 2.0269 -1.2692 -0.0006 8 1 3.1069 -1.2692 -0.0001 9 8 1.4154 -2.3285 -0.0006 10 6 2.1495 -3.4629 0.1096 11 6 3.5110 -3.3901 0.3676 12 6 4.2581 -4.5467 0.4738 13 6 3.6563 -5.7861 0.3296 14 6 2.3035 -5.8784 0.0787 15 6 1.5348 -4.7172 -0.0314 16 6 0.0897 -4.8081 -0.2997 17 7 -0.6212 -3.7259 -0.4019 18 7 -1.9962 -3.8124 -0.6566 19 6 -2.7338 -2.6894 -0.7631 20 8 -2.2060 -1.6013 -0.6376 21 6 -4.1842 -2.7807 -1.0313 22 6 -4.7694 -4.0175 -1.3095 23 6 -6.1236 -4.0956 -1.5594 24 6 -6.9030 -2.9525 -1.5293 25 6 -6.3285 -1.7231 -1.2600 26 6 -4.9751 -1.6308 -1.0082 27 7 -4.3634 -0.3155 -0.7137 28 8 -3.5911 -0.1703 0.3432 29 8 -4.5913 0.7095 -1.5085 30 1 -0.4850 0.8400 -0.0004 31 1 3.9876 -2.4277 0.4814 32 1 5.3181 -4.4845 0.6709 33 1 4.2494 -6.6847 0.4149 34 1 1.8392 -6.8469 -0.0333 35 1 -0.3789 -5.7747 -0.4125 36 1 -2.4171 -4.6805 -0.7571 37 1 -4.1630 -4.9109 -1.3298 38 1 -6.5775 -5.0516 -1.7752 39 1 -7.9636 -3.0197 -1.7214 40 1 -6.9417 -0.8341 -1.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059165441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = 128.399175 kcal Electronic energy + Delta-G solvation = -30821.819874 eV Core-core repulsion = 26383.271527 eV Total energy + Delta-G solvation = -4438.548346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.105 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -40.66909 -39.99702 -38.39729 -37.94295 -36.90597 -35.50848 -33.88379 -32.76034 -32.59901 -31.99541 -31.33477 -29.29289 -28.47725 -26.60795 -25.19292 -24.41109 -23.11831 -22.17470 -21.26069 -20.47413 -19.96347 -18.75164 -18.19456 -17.70100 -17.66843 -16.94021 -16.40029 -15.95530 -15.60114 -15.07281 -14.87671 -14.79118 -14.53629 -14.38876 -14.13229 -14.04062 -13.77311 -13.38595 -13.16744 -12.73442 -12.50244 -12.37084 -12.17352 -11.91962 -11.81048 -11.13585 -10.95178 -10.81496 -10.70927 -10.64340 -10.59672 -10.27239 -10.19365 -9.88776 -9.63789 -9.37403 -9.34698 -8.95454 -8.88404 -8.76547 -7.55020 -6.92456 -6.59403 -3.47187 -0.35514 0.34334 0.74360 1.32551 1.88997 2.62891 2.66679 2.89408 3.11150 3.16205 3.18072 3.29899 3.82211 3.90374 4.01339 4.15896 4.30032 4.51375 4.55384 4.68939 4.78258 5.08867 5.24437 5.28774 5.36316 5.43987 5.46143 5.61902 5.69078 5.81142 5.93564 6.04618 6.15930 6.31603 6.51274 6.70281 6.93957 7.04327 7.11268 7.19072 7.44871 7.53425 7.62520 7.69660 7.88032 8.14967 8.27030 8.65748 9.13690 10.04251 10.48856 Molecular weight = 355.10amu Principal moments of inertia in cm(-1) A = 0.009988 B = 0.003894 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.804071 B = 7188.996704 C = 9881.853824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.041 3.959 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.392 4.392 8 H 0.088 0.912 9 O -0.034 6.034 10 C 0.082 3.918 11 C -0.237 4.237 12 C -0.058 4.058 13 C -0.265 4.265 14 C -0.026 4.026 15 C -0.172 4.172 16 C 0.110 3.890 17 N -0.212 5.212 18 N -0.581 5.581 19 C 0.527 3.473 20 O -0.407 6.407 21 C -0.064 4.064 22 C -0.088 4.088 23 C -0.084 4.084 24 C -0.097 4.097 25 C -0.072 4.072 26 C 0.055 3.945 27 N -0.041 5.041 28 O -0.047 6.047 29 O -0.200 6.200 30 H 0.293 0.707 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.361 0.639 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 -9.487 -2.682 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.183 4.183 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.471 4.471 8 H 0.105 0.895 9 O 0.079 5.921 10 C 0.020 3.980 11 C -0.256 4.256 12 C -0.078 4.078 13 C -0.285 4.285 14 C -0.047 4.047 15 C -0.178 4.178 16 C -0.094 4.094 17 N -0.021 5.021 18 N -0.324 5.324 19 C 0.308 3.692 20 O -0.272 6.272 21 C -0.070 4.070 22 C -0.107 4.107 23 C -0.102 4.102 24 C -0.116 4.116 25 C -0.091 4.091 26 C -0.030 4.030 27 N 0.453 4.547 28 O -0.271 6.271 29 O -0.382 6.382 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.198 0.802 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.345 -7.914 -2.950 16.647 hybrid contribution 0.313 -0.357 -0.057 0.478 sum -14.032 -8.271 -3.007 16.564 Atomic orbital electron populations 1.69073 1.06615 1.30438 1.27200 1.27074 0.95404 0.98610 0.97241 0.85898 0.79380 0.79365 0.79746 1.19060 1.19673 1.18965 1.21087 0.92967 0.83293 1.49768 0.89535 1.80499 1.36436 1.11462 1.63654 1.19122 0.90115 0.85927 1.02869 1.20693 0.94247 0.98249 1.12435 1.20613 0.97598 0.92491 0.97073 1.20115 0.94715 0.96300 1.17364 1.20486 0.93463 0.94970 0.95805 1.16849 0.89151 0.91056 1.20779 1.24269 0.94412 0.92945 0.97727 1.76010 0.86371 1.23915 1.15758 1.46824 1.06595 1.07107 1.71846 1.17636 0.84342 0.85553 0.81682 1.91278 1.70325 1.24580 1.41045 1.20177 0.95339 0.91947 0.99513 1.21443 0.95668 0.95912 0.97714 1.21490 0.93247 0.99644 0.95829 1.21313 1.01158 0.90793 0.98325 1.20945 0.91317 1.00420 0.96394 1.20228 0.93308 0.81604 1.07820 1.50148 0.99706 1.02834 1.02018 1.96390 1.26981 1.91720 1.12004 1.96247 1.67872 1.29263 1.44832 0.89447 0.86488 0.88407 0.88422 0.87813 0.89030 0.80172 0.83533 0.83518 0.83264 0.83199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -20.20 12.35 55.98 0.69 -19.51 16 2 C 0.04 1.09 5.69 -15.22 -0.09 1.01 16 3 Si 0.93 20.07 29.64 -169.99 -5.04 15.03 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.82 9.42 34.08 0.32 -10.50 16 8 H 0.09 2.25 5.14 -52.49 -0.27 1.98 16 9 O -0.03 -0.96 7.16 21.46 0.15 -0.81 16 10 C 0.08 2.07 6.59 -38.58 -0.25 1.82 16 11 C -0.24 -5.46 9.06 -39.44 -0.36 -5.81 16 12 C -0.06 -1.16 10.03 -39.52 -0.40 -1.56 16 13 C -0.26 -4.97 10.03 -39.60 -0.40 -5.37 16 14 C -0.03 -0.49 9.79 -39.17 -0.38 -0.88 16 15 C -0.17 -3.81 5.88 -104.88 -0.62 -4.43 16 16 C 0.11 2.23 10.75 -14.70 -0.16 2.07 16 17 N -0.21 -4.87 8.90 32.13 0.29 -4.58 16 18 N -0.58 -10.74 6.21 30.52 0.19 -10.55 16 19 C 0.53 10.52 7.75 -12.36 -0.10 10.43 16 20 O -0.41 -10.30 11.87 -19.34 -0.23 -10.53 16 21 C -0.06 -0.93 5.87 -104.97 -0.62 -1.55 16 22 C -0.09 -0.81 9.52 -39.18 -0.37 -1.19 16 23 C -0.08 -0.52 10.03 -39.64 -0.40 -0.92 16 24 C -0.10 -0.63 10.04 -39.49 -0.40 -1.03 16 25 C -0.07 -0.73 9.85 -39.64 -0.39 -1.12 16 26 C 0.05 0.83 6.40 -79.54 -0.51 0.32 16 27 N -0.04 -0.81 4.07 34.16 0.14 -0.67 16 28 O -0.05 -1.07 16.76 -40.03 -0.67 -1.75 16 29 O -0.20 -4.09 19.88 -31.57 -0.63 -4.72 16 30 H 0.29 7.91 8.26 -40.82 -0.34 7.57 16 31 H 0.12 2.66 5.81 -52.49 -0.30 2.36 16 32 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.09 1.41 8.02 -52.49 -0.42 0.99 16 36 H 0.36 4.76 6.73 -182.59 -1.23 3.53 16 37 H 0.15 0.97 6.46 -52.49 -0.34 0.63 16 38 H 0.15 0.38 8.06 -52.48 -0.42 -0.04 16 39 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -36.56 363.66 -8.97 -45.53 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.23 Total: 5.77 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -5.11 Total: -18.71 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 1.31 Total: -35.30 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -1.37 Total: -17.80 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.04 Total: 15.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.56 -8.97 -45.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059165441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.929 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds