Wall clock time and date at job start Tue Mar 31 2020 05:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99781 * 2 1 4 4 C 1.34777 * 119.99838 * 179.97438 * 2 1 3 5 5 O 1.21646 * 120.00266 * 355.52326 * 4 2 1 6 6 C 1.47120 * 119.99505 * 175.51359 * 4 2 1 7 7 C 1.43207 * 119.99666 * 103.16815 * 6 4 2 8 8 N 4.38733 * 144.45858 * 128.62980 * 2 1 3 9 9 C 1.37854 * 120.00384 * 283.16436 * 6 4 2 10 10 C 1.46382 * 120.00159 * 352.88888 * 9 6 4 11 11 C 1.40295 * 120.10904 * 324.02964 * 10 9 6 12 12 C 1.37598 * 119.88556 * 180.02562 * 11 10 9 13 13 Cl 1.73597 * 119.94366 * 179.97438 * 12 11 10 14 14 C 1.39350 * 120.11169 * 0.02562 * 12 11 10 15 15 O 1.35527 * 119.89008 * 179.97438 * 14 12 11 16 16 C 1.34742 * 116.99302 * 89.99879 * 15 14 12 17 17 H 1.07994 * 120.00527 * 0.02562 * 16 15 14 18 18 C 1.38770 * 119.99494 * 179.72922 * 16 15 14 19 19 N 1.31472 * 119.99848 * 180.27771 * 18 16 15 20 20 Si 1.86799 * 120.00266 * 0.27730 * 18 16 15 21 21 H 1.48501 * 109.47486 * 89.99712 * 20 18 16 22 22 H 1.48498 * 109.47361 * 210.00243 * 20 18 16 23 23 H 1.48506 * 109.46956 * 329.99989 * 20 18 16 24 24 C 1.39351 * 120.22602 * 0.24957 * 14 12 11 25 25 Cl 1.73602 * 119.94494 * 179.72340 * 24 14 12 26 26 C 1.37600 * 120.11183 * 359.45298 * 24 14 12 27 27 H 1.08998 * 109.47455 * 269.99973 * 1 2 3 28 28 H 1.09002 * 109.47362 * 30.00599 * 1 2 3 29 29 H 1.09001 * 109.46868 * 149.99773 * 1 2 3 30 30 H 1.09004 * 109.47055 * 274.44578 * 3 2 1 31 31 H 1.08998 * 109.47118 * 34.44731 * 3 2 1 32 32 H 1.08999 * 109.46709 * 154.44851 * 3 2 1 33 33 H 1.07996 * 119.99787 * 172.88397 * 9 6 4 34 34 H 1.07998 * 120.05990 * 0.03442 * 11 10 9 35 35 H 0.97003 * 119.99763 * 179.97438 * 19 18 16 36 36 H 1.08000 * 120.05439 * 180.27580 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5335 -2.2191 0.0832 6 6 3.6067 -1.1691 -0.0991 7 6 4.4032 -1.4046 1.0674 8 7 5.0350 -1.5921 1.9923 9 6 4.2153 -0.9443 -1.3155 10 6 3.4077 -0.8587 -2.5333 11 6 2.2750 -1.6724 -2.6853 12 6 1.5195 -1.5886 -3.8322 13 17 0.1180 -2.5952 -4.0221 14 6 1.8781 -0.6978 -4.8420 15 8 1.1310 -0.6192 -5.9701 16 6 0.1151 0.2660 -5.9704 17 1 -0.0723 0.8732 -5.0973 18 6 -0.6864 0.4017 -7.0951 19 7 -1.6742 1.2693 -7.0974 20 14 -0.3618 -0.6482 -8.6056 21 1 -1.1401 -1.9092 -8.5086 22 1 -0.7739 0.0954 -9.8232 23 1 1.0867 -0.9655 -8.6860 24 6 3.0055 0.1085 -4.6984 25 17 3.4496 1.2106 -5.9641 26 6 3.7642 0.0367 -3.5528 27 1 -0.3634 0.0000 1.0276 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 2.3102 1.6233 -1.0246 31 1 1.6452 2.0071 0.5813 32 1 3.1821 1.1198 0.4433 33 1 5.2880 -0.8313 -1.3698 34 1 1.9964 -2.3634 -1.9034 35 1 -2.2342 1.3645 -7.8838 36 1 4.6353 0.6652 -3.4406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059334138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:46 Heat of formation + Delta-G solvation = 18.143574 kcal Electronic energy + Delta-G solvation = -26448.453736 eV Core-core repulsion = 22372.993480 eV Total energy + Delta-G solvation = -4075.460257 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 354.032 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.60746 -39.41474 -37.26654 -36.84666 -36.27962 -35.89787 -35.70750 -33.77922 -32.14575 -30.65347 -29.61591 -28.13837 -26.52437 -25.38109 -23.81458 -22.83573 -21.43715 -20.58602 -18.18610 -18.08964 -17.39055 -16.91762 -16.55721 -16.18310 -15.71223 -15.16745 -14.72373 -14.31469 -14.25171 -13.93138 -13.90558 -13.73193 -13.38746 -13.15002 -12.90261 -12.76525 -12.67672 -12.50963 -12.46751 -12.19845 -12.13472 -11.96028 -11.90896 -11.23765 -11.03265 -10.68493 -10.60095 -10.41376 -10.30470 -10.19454 -9.79397 -9.60684 -8.89470 -8.60391 -8.49835 -8.07211 -6.21419 -3.96762 0.05875 1.12521 1.44924 2.06062 2.25523 2.40358 2.66072 2.82737 3.04425 3.30452 3.34894 3.46428 3.50026 3.66609 4.19561 4.37790 4.51962 4.60233 4.85673 4.89937 5.04028 5.11364 5.16458 5.19756 5.27151 5.38988 5.48192 5.52690 5.62205 5.64951 5.81743 6.01368 6.09335 6.19319 6.27190 6.48638 7.01579 7.18472 7.68967 7.83342 8.12982 9.12887 9.61359 10.88920 Molecular weight = 354.03amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.003947 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.521041 B = 7092.124297 C = 7768.079517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.074 3.926 4 C 0.573 3.427 5 O -0.523 6.523 6 C -0.122 4.122 7 C 0.265 3.735 8 N -0.410 5.410 9 C 0.049 3.951 10 C -0.116 4.116 11 C -0.077 4.077 12 C -0.058 4.058 13 Cl -0.037 7.037 14 C 0.198 3.802 15 O -0.254 6.254 16 C -0.361 4.361 17 H 0.088 0.912 18 C 0.066 3.934 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.260 1.260 24 C -0.063 4.063 25 Cl -0.040 7.040 26 C -0.063 4.063 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.274 0.726 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 0.576 10.814 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.335 5.335 3 C -0.069 4.069 4 C 0.359 3.641 5 O -0.400 6.400 6 C -0.128 4.128 7 C -0.050 4.050 8 N -0.086 5.086 9 C 0.026 3.974 10 C -0.117 4.117 11 C -0.096 4.096 12 C -0.086 4.086 13 Cl -0.008 7.008 14 C 0.150 3.850 15 O -0.167 6.167 16 C -0.436 4.436 17 H 0.106 0.894 18 C -0.134 4.134 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.184 1.184 24 C -0.091 4.091 25 Cl -0.011 7.011 26 C -0.082 4.082 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.084 0.916 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.564 -0.276 11.881 15.901 hybrid contribution -0.299 -0.146 -1.170 1.216 sum 10.265 -0.422 10.712 14.842 Atomic orbital electron populations 1.21759 0.77766 1.04301 1.01990 1.47595 1.07592 1.05939 1.72364 1.21903 0.97087 0.84970 1.02894 1.17660 0.86008 0.84044 0.76388 1.90858 1.69341 1.30801 1.49023 1.17980 0.92043 1.13426 0.89380 1.25024 0.93402 0.93848 0.92691 1.81251 1.08767 1.09027 1.09572 1.22756 0.99716 0.86198 0.88728 1.18401 0.97408 1.01196 0.94738 1.21829 0.92020 0.98747 0.96959 1.21314 0.93010 0.99012 0.95286 1.98384 1.38784 1.66110 1.97475 1.18700 0.89907 0.89788 0.86608 1.83413 1.43867 1.60840 1.28545 1.20186 1.04937 1.15604 1.02902 0.89429 1.24161 0.94821 0.96652 0.97743 1.69589 1.18390 1.35123 1.30648 0.86374 0.79897 0.80189 0.81682 1.20216 1.21257 1.18404 1.21293 0.98716 0.96682 0.92422 1.98380 1.91515 1.60657 1.50499 1.21072 0.99023 0.97614 0.90531 0.92435 0.90392 0.89927 0.91506 0.90593 0.90914 0.82972 0.82709 0.91580 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.42 59.85 0.62 1.50 16 2 N -0.60 -6.44 3.27 -190.91 -0.63 -7.07 16 3 C 0.07 0.57 10.16 59.85 0.61 1.17 16 4 C 0.57 7.17 4.39 -12.66 -0.06 7.11 16 5 O -0.52 -8.24 14.99 5.24 0.08 -8.16 16 6 C -0.12 -1.25 3.69 -104.51 -0.39 -1.63 16 7 C 0.27 2.98 15.36 -22.48 -0.35 2.63 16 8 N -0.41 -5.34 18.53 41.82 0.78 -4.57 16 9 C 0.05 0.42 9.42 -36.45 -0.34 0.07 16 10 C -0.12 -1.33 5.48 -105.08 -0.58 -1.91 16 11 C -0.08 -1.11 8.09 -39.04 -0.32 -1.43 16 12 C -0.06 -1.03 6.33 -39.40 -0.25 -1.28 16 13 Cl -0.04 -0.69 28.49 -51.86 -1.48 -2.16 16 14 C 0.20 3.86 5.59 -38.75 -0.22 3.65 16 15 O -0.25 -6.00 7.40 0.98 0.01 -6.00 16 16 C -0.36 -9.43 10.28 30.93 0.32 -9.12 16 17 H 0.09 2.43 7.99 -52.49 -0.42 2.01 16 18 C 0.07 1.81 5.50 -17.51 -0.10 1.71 16 19 N -0.90 -25.52 13.96 55.49 0.77 -24.74 16 20 Si 0.89 21.58 28.62 -169.99 -4.86 16.72 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.06 -1.03 6.33 -39.40 -0.25 -1.28 16 25 Cl -0.04 -0.67 28.49 -51.86 -1.48 -2.14 16 26 C -0.06 -0.75 9.57 -39.04 -0.37 -1.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 29 H 0.08 1.02 7.49 -51.93 -0.39 0.63 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.07 0.47 6.81 -51.93 -0.35 0.11 16 33 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.16 2.31 5.07 -52.49 -0.27 2.04 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -31.56 359.90 -6.14 -37.70 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: -3.09 Total: -5.08 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.66 Total: 0.08 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.92 Total: -36.37 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.09 Total: -14.15 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.86 Total: 16.72 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -2.95 Total: -4.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.56 -6.14 -37.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059334138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.840 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds