Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30594 * 122.98858 * 2 1 4 4 C 1.30361 * 117.31544 * 180.02562 * 3 2 1 5 5 C 1.47763 * 124.74471 * 180.02562 * 4 3 2 6 6 C 1.39625 * 120.15075 * 133.15603 * 5 4 3 7 7 C 1.37933 * 119.85311 * 179.97438 * 6 5 4 8 8 C 1.38387 * 120.14689 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.85367 * 179.97438 * 8 7 6 10 10 C 1.38351 * 120.29669 * 0.02562 * 8 7 6 11 11 C 1.37967 * 120.15018 * 359.73751 * 10 8 7 12 12 C 1.50695 * 120.07774 * 180.25564 * 11 10 8 13 13 S 1.70920 * 110.51683 * 359.97438 * 4 3 2 14 14 C 1.37024 * 122.99620 * 180.02562 * 2 1 3 15 15 C 1.46445 * 126.13264 * 0.02562 * 14 2 1 16 16 O 1.21758 * 119.99747 * 343.98596 * 15 14 2 17 17 N 1.34770 * 120.00181 * 163.97927 * 15 14 2 18 18 C 1.36860 * 120.00077 * 184.34527 * 17 15 14 19 19 H 1.07995 * 119.99740 * 22.19854 * 18 17 15 20 20 C 1.39025 * 120.00061 * 202.20375 * 18 17 15 21 21 N 1.31385 * 119.99848 * 23.32526 * 20 18 17 22 22 Si 1.86794 * 119.99826 * 203.33138 * 20 18 17 23 23 H 1.48502 * 109.47360 * 89.99896 * 22 20 18 24 24 H 1.48506 * 109.47077 * 209.99691 * 22 20 18 25 25 H 1.48503 * 109.47524 * 329.99757 * 22 20 18 26 26 C 1.46503 * 120.00372 * 4.34326 * 17 15 14 27 27 C 1.47204 * 109.46667 * 82.89475 * 26 17 15 28 28 N 5.22442 * 135.80711 * 152.43105 * 2 1 3 29 29 H 1.09002 * 109.46799 * 90.02643 * 1 2 3 30 30 H 1.09005 * 109.46740 * 210.02274 * 1 2 3 31 31 H 1.08992 * 109.47402 * 330.02315 * 1 2 3 32 32 H 1.08002 * 120.07452 * 359.95422 * 6 5 4 33 33 H 1.07996 * 119.92423 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47070 * 89.99587 * 9 8 7 35 35 H 1.08998 * 109.47058 * 210.00312 * 9 8 7 36 36 H 1.09003 * 109.46706 * 330.00345 * 9 8 7 37 37 H 1.08004 * 119.92194 * 180.02562 * 10 8 7 38 38 H 1.08997 * 109.47712 * 273.48426 * 12 11 10 39 39 H 1.09001 * 109.47256 * 33.48812 * 12 11 10 40 40 H 1.09002 * 109.47315 * 153.48141 * 12 11 10 41 41 H 0.97003 * 119.99693 * 180.02562 * 21 20 18 42 42 H 1.08993 * 109.47707 * 202.89165 * 26 17 15 43 43 H 1.08998 * 109.46916 * 322.90038 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2181 1.0954 0.0000 4 6 3.5153 0.9665 -0.0005 5 6 4.4734 2.0915 -0.0001 6 6 5.5571 2.0894 0.8803 7 6 6.4479 3.1425 0.8752 8 6 6.2698 4.1992 -0.0004 9 6 7.2468 5.3466 0.0000 10 6 5.1981 4.2076 -0.8753 11 6 4.3023 3.1583 -0.8840 12 6 3.1389 3.1664 -1.8417 13 16 3.9532 -0.6856 -0.0004 14 6 2.2533 -1.1492 -0.0005 15 6 1.7315 -2.5176 -0.0017 16 8 0.5675 -2.7255 0.2887 17 7 2.5397 -3.5467 -0.3242 18 6 2.0316 -4.8144 -0.4120 19 1 0.9754 -4.9622 -0.5818 20 6 2.8751 -5.9119 -0.2825 21 7 4.0164 -5.7915 0.3571 22 14 2.3858 -7.5578 -1.0182 23 1 2.8914 -7.6471 -2.4116 24 1 2.9714 -8.6558 -0.2078 25 1 0.9057 -7.6789 -1.0199 26 6 3.9623 -3.3084 -0.5808 27 6 4.6906 -3.2636 0.6976 28 7 5.2529 -3.2283 1.6855 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 5.6973 1.2652 1.5641 33 1 7.2863 3.1422 1.5559 34 1 8.0533 5.1372 -0.7026 35 1 6.7335 6.2609 -0.2978 36 1 7.6601 5.4714 1.0009 37 1 5.0651 5.0353 -1.5564 38 1 2.3043 3.7068 -1.3951 39 1 3.4349 3.6571 -2.7689 40 1 2.8359 2.1411 -2.0540 41 1 4.6051 -6.5572 0.4471 42 1 4.3603 -4.1142 -1.1975 43 1 4.0834 -2.3585 -1.1014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = 69.595518 kcal Electronic energy + Delta-G solvation = -28407.403933 eV Core-core repulsion = 24544.891634 eV Total energy + Delta-G solvation = -3862.512299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.110 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.05250 -39.33602 -38.47132 -35.92136 -34.55518 -33.98155 -32.39621 -32.16795 -30.94462 -28.22498 -27.74051 -27.60107 -27.18401 -24.89917 -23.72352 -22.22102 -21.15690 -20.48167 -18.41480 -18.15451 -17.94418 -16.74926 -16.30538 -16.02886 -15.61236 -15.05352 -14.86261 -14.57117 -14.29258 -14.08925 -13.89363 -13.59446 -13.42715 -13.27694 -13.24460 -13.01074 -12.74390 -12.66506 -12.20271 -12.12712 -12.11393 -11.91142 -11.84080 -11.67789 -11.52195 -11.30052 -11.29591 -11.11999 -10.88407 -10.84769 -10.65319 -10.51552 -9.52795 -9.39929 -9.08734 -8.86413 -8.80216 -8.66193 -8.26594 -7.97364 -6.75337 -4.19100 0.39449 1.19101 1.29167 1.68490 2.02226 2.87459 3.05101 3.10919 3.15395 3.43360 3.60607 3.75232 3.93319 3.96157 4.21719 4.57348 4.65736 4.69335 4.70248 4.81537 4.93231 5.07156 5.16454 5.23408 5.36535 5.42795 5.44474 5.53979 5.56925 5.64702 5.72762 5.77484 5.81541 5.91675 6.06616 6.13100 6.14094 6.18859 6.26792 6.36704 6.43357 6.52104 6.80843 6.85703 7.24521 7.65833 8.02939 8.06401 8.52499 8.75771 8.91161 9.50132 10.29916 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.003097 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.862559 B = 9038.826703 C =10157.117944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.114 3.886 3 N -0.459 5.459 4 C 0.035 3.965 5 C -0.024 4.024 6 C -0.089 4.089 7 C -0.126 4.126 8 C -0.076 4.076 9 C -0.114 4.114 10 C -0.125 4.125 11 C -0.039 4.039 12 C -0.109 4.109 13 S 0.187 5.813 14 C -0.260 4.260 15 C 0.518 3.482 16 O -0.555 6.555 17 N -0.421 5.421 18 C -0.308 4.308 19 H 0.116 0.884 20 C 0.035 3.965 21 N -0.857 5.857 22 Si 0.932 3.068 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.265 1.265 26 C 0.207 3.793 27 C 0.234 3.766 28 N -0.444 5.444 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.279 0.721 42 H 0.135 0.865 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 16.146 -5.997 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.025 4.025 3 N -0.173 5.173 4 C -0.236 4.236 5 C -0.027 4.027 6 C -0.110 4.110 7 C -0.144 4.144 8 C -0.077 4.077 9 C -0.171 4.171 10 C -0.143 4.143 11 C -0.042 4.042 12 C -0.166 4.166 13 S 0.450 5.550 14 C -0.384 4.384 15 C 0.307 3.693 16 O -0.439 6.439 17 N -0.140 5.140 18 C -0.435 4.435 19 H 0.133 0.867 20 C -0.172 4.172 21 N -0.493 5.493 22 Si 0.758 3.242 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.189 1.189 26 C 0.078 3.922 27 C -0.085 4.085 28 N -0.123 5.123 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.932 15.922 -4.333 17.898 hybrid contribution -0.972 -0.979 -0.464 1.456 sum 5.960 14.943 -4.797 16.787 Atomic orbital electron populations 1.20565 0.86338 1.04315 1.02985 1.20710 0.98151 0.84866 0.98806 1.66318 1.03683 1.31703 1.15614 1.25322 0.93413 0.98824 1.06065 1.17761 0.94019 0.92557 0.98362 1.21260 0.93421 0.98772 0.97534 1.20872 0.99725 0.93884 0.99914 1.20011 0.95968 0.96066 0.95611 1.20806 0.97872 0.95786 1.02629 1.20815 0.94907 0.98482 1.00097 1.19970 0.96137 0.92475 0.95656 1.20776 0.95635 1.03491 0.96698 1.84450 1.06760 0.98541 1.65279 1.26267 0.94618 1.00369 1.17167 1.16516 0.87165 0.81887 0.83698 1.90639 1.16884 1.83266 1.53112 1.43525 1.04851 1.07553 1.58034 1.19813 0.96590 0.79371 1.47741 0.86692 1.25473 0.96011 1.00450 0.95300 1.69868 1.11949 1.33315 1.34207 0.85813 0.79566 0.79920 0.78931 1.19772 1.20811 1.18922 1.18956 0.82390 1.02188 0.88713 1.28886 0.93677 0.90769 0.95201 1.80946 1.09615 1.11467 1.10311 0.91007 0.87759 0.91604 0.85573 0.85630 0.91044 0.91517 0.91483 0.85722 0.90456 0.92008 0.91169 0.91029 0.84763 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 9.92 36.01 0.36 -1.04 16 2 C 0.11 2.15 6.83 -83.56 -0.57 1.58 16 3 N -0.46 -8.13 9.08 -8.19 -0.07 -8.21 16 4 C 0.03 0.58 5.77 -14.28 -0.08 0.49 16 5 C -0.02 -0.34 5.82 -104.98 -0.61 -0.96 16 6 C -0.09 -1.17 9.68 -39.18 -0.38 -1.55 16 7 C -0.13 -1.37 9.68 -39.64 -0.38 -1.75 16 8 C -0.08 -0.76 5.89 -104.53 -0.62 -1.37 16 9 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 10 C -0.12 -1.32 9.35 -39.64 -0.37 -1.70 16 11 C -0.04 -0.50 5.91 -104.22 -0.62 -1.12 16 12 C -0.11 -1.29 9.18 36.00 0.33 -0.96 16 13 S 0.19 3.24 16.44 -107.50 -1.77 1.47 16 14 C -0.26 -5.25 6.19 -36.72 -0.23 -5.48 16 15 C 0.52 12.13 7.44 -12.96 -0.10 12.03 16 16 O -0.55 -14.25 14.13 5.14 0.07 -14.18 16 17 N -0.42 -9.80 2.59 -119.51 -0.31 -10.11 16 18 C -0.31 -7.58 9.19 -15.02 -0.14 -7.71 16 19 H 0.12 2.94 7.51 -52.49 -0.39 2.55 16 20 C 0.03 0.81 4.76 -17.45 -0.08 0.73 16 21 N -0.86 -20.76 9.84 55.50 0.55 -20.21 16 22 Si 0.93 18.43 29.61 -169.99 -5.03 13.40 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 C 0.21 4.14 4.74 -6.83 -0.03 4.10 16 27 C 0.23 5.10 10.92 -20.72 -0.23 4.87 16 28 N -0.44 -10.24 18.55 42.20 0.78 -9.46 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.98 5.84 -51.93 -0.30 1.68 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 40 H 0.07 0.96 6.45 -51.93 -0.33 0.62 16 41 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 42 H 0.13 2.61 6.76 -51.93 -0.35 2.26 16 43 H 0.09 1.52 4.67 -24.90 -0.12 1.41 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -29.52 373.39 -8.40 -37.92 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.85 Total: 4.02 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.38 Total: -0.27 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.95 Total: -47.99 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.07 Total: -14.18 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.77 Total: 1.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.52 -8.40 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.513 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds