Wall clock time and date at job start Tue Mar 31 2020 05:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00133 * 3 2 1 6 6 H 1.48504 * 109.47102 * 60.00487 * 3 2 1 7 7 C 1.38539 * 119.99552 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99333 * 180.27057 * 7 2 1 9 9 N 1.36935 * 120.00095 * 0.02562 * 7 2 1 10 10 N 1.40168 * 126.21516 * 359.68490 * 9 7 2 11 11 C 1.32005 * 107.73829 * 179.82596 * 10 9 7 12 12 C 1.41191 * 131.95546 * 180.09041 * 11 10 9 13 13 S 1.76199 * 120.32029 * 0.35627 * 12 11 10 14 14 O 1.42095 * 106.40602 * 48.56329 * 13 12 11 15 15 O 1.42100 * 106.40161 * 181.48773 * 13 12 11 16 16 N 1.65602 * 107.21775 * 295.02530 * 13 12 11 17 17 C 1.47152 * 120.98268 * 269.71780 * 16 13 12 18 18 C 1.53716 * 108.16388 * 129.43199 * 17 16 13 19 19 O 1.42966 * 109.14526 * 52.53955 * 18 17 16 20 20 C 1.42968 * 114.16386 * 297.28986 * 19 18 17 21 21 C 1.47156 * 120.98479 * 90.00158 * 16 13 12 22 22 C 1.35990 * 119.35752 * 180.38355 * 12 11 10 23 23 C 1.40653 * 119.75935 * 359.97438 * 22 12 11 24 24 C 1.34777 * 120.48990 * 0.02562 * 23 22 12 25 25 N 1.37203 * 120.68540 * 359.97438 * 24 23 22 26 26 C 1.34810 * 126.21383 * 179.97438 * 9 7 2 27 27 O 1.21709 * 125.98221 * 359.97438 * 26 9 7 28 28 H 0.97005 * 119.99833 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.68162 * 249.21318 * 17 16 13 30 30 H 1.09001 * 109.68153 * 9.76196 * 17 16 13 31 31 H 1.08997 * 109.65695 * 292.57378 * 18 17 16 32 32 H 1.08993 * 109.48438 * 172.40114 * 18 17 16 33 33 H 1.09000 * 109.51199 * 302.65464 * 20 19 18 34 34 H 1.08999 * 109.54871 * 182.53378 * 20 19 18 35 35 H 1.09002 * 109.68007 * 350.23375 * 21 16 13 36 36 H 1.08997 * 109.68492 * 110.78645 * 21 16 13 37 37 H 1.08000 * 120.12428 * 180.02562 * 22 12 11 38 38 H 1.08007 * 119.75683 * 179.97438 * 23 22 12 39 39 H 1.08006 * 119.65906 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0087 -1.1998 0.0005 8 1 3.0887 -1.1998 0.0050 9 7 1.3239 -2.3857 0.0005 10 7 -0.0695 -2.5374 0.0063 11 6 -0.3333 -3.8308 0.0003 12 6 -1.5507 -4.5458 0.0004 13 16 -3.0880 -3.6849 0.0003 14 8 -2.9974 -2.7018 -1.0217 15 8 -4.1040 -4.6777 0.0359 16 7 -3.1887 -2.8613 1.4335 17 6 -3.7989 -3.4797 2.6212 18 6 -2.8258 -3.3165 3.7999 19 8 -2.4600 -1.9396 3.9187 20 6 -1.7626 -1.4192 2.7843 21 6 -2.6763 -1.4873 1.5554 22 6 -1.5253 -5.9055 0.0012 23 6 -0.2915 -6.5807 0.0013 24 6 0.8660 -5.8902 0.0012 25 7 0.8627 -4.5181 0.0004 26 6 1.8676 -3.6193 0.0005 27 8 3.0572 -3.8765 0.0001 28 1 -0.4850 0.8401 0.0004 29 1 -4.7426 -2.9840 2.8493 30 1 -3.9760 -4.5388 2.4337 31 1 -1.9330 -3.9165 3.6239 32 1 -3.3100 -3.6453 4.7193 33 1 -0.8659 -2.0123 2.6047 34 1 -1.4820 -0.3829 2.9725 35 1 -2.1094 -1.2263 0.6616 36 1 -3.5087 -0.7945 1.6779 37 1 -2.4492 -6.4649 0.0008 38 1 -0.2713 -7.6606 0.0023 39 1 1.8058 -6.4223 0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065129376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:42 Heat of formation + Delta-G solvation = -13.296642 kcal Electronic energy + Delta-G solvation = -31587.313318 eV Core-core repulsion = 27239.950099 eV Total energy + Delta-G solvation = -4347.363219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.088 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05200 -38.87630 -37.75290 -36.92752 -35.95068 -35.50287 -34.52123 -33.94452 -32.69028 -31.14664 -30.95128 -28.36430 -26.77517 -26.35907 -23.94417 -23.76576 -22.55895 -21.67174 -21.04108 -18.72580 -18.48894 -17.88976 -17.38092 -16.79035 -16.39204 -16.11291 -15.96631 -15.50473 -15.36459 -15.03971 -14.98314 -14.74781 -14.29332 -14.15681 -13.86643 -13.77862 -13.06898 -12.79441 -12.32247 -12.19735 -11.99927 -11.93782 -11.78730 -11.77713 -11.69021 -11.32609 -11.18249 -11.14861 -11.12445 -10.88157 -10.65416 -10.46775 -10.34291 -10.16420 -9.97215 -9.83663 -9.17102 -8.71653 -8.57794 -7.21112 -6.78729 -4.35375 0.49928 0.80637 2.04026 2.65816 2.90210 3.03697 3.08295 3.13266 3.48232 3.78636 3.80150 4.01810 4.09770 4.12013 4.62290 4.80744 4.82241 4.92600 5.00548 5.02392 5.17321 5.30033 5.47184 5.53010 5.58814 5.65175 5.78427 5.86339 5.93499 5.99459 6.02024 6.13502 6.38529 6.45586 6.60066 6.75191 6.79578 6.95438 7.19260 7.40906 7.67908 8.05714 8.53185 8.86644 9.31914 10.19480 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.006256 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.216021 B = 4474.621246 C = 5908.283547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.282 4.282 8 H 0.129 0.871 9 N -0.210 5.210 10 N -0.205 5.205 11 C 0.209 3.791 12 C -0.654 4.654 13 S 2.704 3.296 14 O -0.931 6.931 15 O -0.970 6.970 16 N -0.994 5.994 17 C 0.088 3.912 18 C 0.049 3.951 19 O -0.387 6.387 20 C 0.061 3.939 21 C 0.086 3.914 22 C 0.030 3.970 23 C -0.225 4.225 24 C 0.176 3.824 25 N -0.456 5.456 26 C 0.538 3.462 27 O -0.593 6.593 28 H 0.279 0.721 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.067 0.933 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.436 -6.778 5.208 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.173 4.173 3 Si 0.766 3.234 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.412 4.412 8 H 0.146 0.854 9 N -0.010 5.010 10 N -0.036 5.036 11 C -0.049 4.049 12 C -0.745 4.745 13 S 2.793 3.207 14 O -0.921 6.921 15 O -0.960 6.960 16 N -0.834 5.834 17 C -0.038 4.038 18 C -0.030 4.030 19 O -0.306 6.306 20 C -0.017 4.017 21 C -0.039 4.039 22 C 0.004 3.996 23 C -0.249 4.249 24 C 0.051 3.949 25 N -0.169 5.169 26 C 0.244 3.756 27 O -0.475 6.475 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.160 0.840 36 H 0.086 0.914 37 H 0.169 0.831 38 H 0.168 0.832 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.700 -5.469 4.700 10.550 hybrid contribution 1.488 -0.567 -0.026 1.592 sum -6.212 -6.035 4.674 9.842 Atomic orbital electron populations 1.70163 1.05752 1.28543 1.36471 1.25570 0.96040 1.00125 0.95559 0.85605 0.79738 0.79405 0.78622 1.18633 1.19715 1.19677 1.19929 0.92198 0.78639 1.50439 0.85362 1.44762 1.01942 1.04696 1.49631 1.78851 0.93629 1.07214 1.23871 1.20229 0.85802 0.89330 1.09538 1.29852 1.16536 1.04688 1.23445 1.01696 0.73115 0.72985 0.72856 1.93636 1.86445 1.58521 1.53516 1.93526 1.54696 1.61121 1.86657 1.57781 1.73469 1.24853 1.27247 1.22153 0.96836 0.99021 0.85772 1.22946 0.97664 0.84237 0.98129 1.87890 1.76805 1.24924 1.40935 1.22835 0.93952 1.00202 0.84716 1.22377 0.98211 0.80240 1.03045 1.20883 0.99249 0.91783 0.87716 1.20608 0.90921 1.00545 1.12863 1.21781 1.00565 0.81073 0.91500 1.43381 1.09562 1.06274 1.57703 1.16307 0.84527 0.81744 0.93043 1.90881 1.11072 1.80637 1.64936 0.90999 0.90226 0.88780 0.92967 0.88340 0.92160 0.88026 0.83999 0.91426 0.83109 0.83199 0.82004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.49 10.89 55.47 0.60 -17.89 16 2 C 0.04 0.98 5.49 -17.54 -0.10 0.88 16 3 Si 0.94 18.01 29.55 -169.99 -5.02 12.98 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 6 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.28 -7.22 10.08 -15.16 -0.15 -7.37 16 8 H 0.13 3.24 7.80 -52.49 -0.41 2.83 16 9 N -0.21 -5.49 3.68 -15.44 -0.06 -5.55 16 10 N -0.20 -5.01 9.40 31.29 0.29 -4.72 16 11 C 0.21 4.59 7.55 -155.59 -1.17 3.41 16 12 C -0.65 -11.94 5.93 -39.27 -0.23 -12.17 16 13 S 2.70 48.51 5.65 -107.50 -0.61 47.90 16 14 O -0.93 -20.20 16.75 -57.17 -0.96 -21.16 16 15 O -0.97 -16.67 15.77 -57.17 -0.90 -17.57 16 16 N -0.99 -16.12 3.34 -112.82 -0.38 -16.49 16 17 C 0.09 1.12 6.60 -3.31 -0.02 1.10 16 18 C 0.05 0.63 7.00 37.53 0.26 0.89 16 19 O -0.39 -6.14 10.74 -35.23 -0.38 -6.52 16 20 C 0.06 1.05 6.98 37.31 0.26 1.31 16 21 C 0.09 1.50 6.49 -3.53 -0.02 1.47 16 22 C 0.03 0.44 9.58 -39.48 -0.38 0.06 16 23 C -0.22 -2.94 9.97 -39.90 -0.40 -3.34 16 24 C 0.18 2.87 10.89 -16.37 -0.18 2.69 16 25 N -0.46 -9.90 2.91 -66.60 -0.19 -10.09 16 26 C 0.54 13.76 8.61 -86.85 -0.75 13.01 16 27 O -0.59 -16.25 17.81 5.18 0.09 -16.16 16 28 H 0.28 6.06 8.31 -40.82 -0.34 5.72 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.02 7.24 -51.93 -0.38 0.65 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.14 2.91 5.29 -51.93 -0.27 2.64 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.15 1.73 7.33 -52.49 -0.38 1.34 16 38 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -33.22 343.94 -9.16 -42.39 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.96 Total: 5.76 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.88 Total: 1.94 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.27 Total: -54.74 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -2.15 Total: -61.42 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.98 kcal Atomic # 16 Polarization: 48.51 SS G_CDS: -0.61 Total: 47.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.22 -9.16 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065129376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.091 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds