Wall clock time and date at job start Tue Mar 31 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00133 * 3 2 1 6 6 H 1.48504 * 109.47102 * 60.00487 * 3 2 1 7 7 C 1.38539 * 119.99552 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99333 * 180.27057 * 7 2 1 9 9 N 1.36935 * 120.00095 * 0.02562 * 7 2 1 10 10 N 1.40168 * 126.21516 * 359.68490 * 9 7 2 11 11 C 1.32005 * 107.73829 * 179.82596 * 10 9 7 12 12 C 1.41191 * 131.95546 * 180.09041 * 11 10 9 13 13 S 1.76199 * 120.32029 * 0.35627 * 12 11 10 14 14 O 1.42095 * 106.40602 * 48.56329 * 13 12 11 15 15 O 1.42100 * 106.40161 * 181.48773 * 13 12 11 16 16 N 1.65602 * 107.21775 * 295.02530 * 13 12 11 17 17 C 1.47152 * 120.98268 * 269.71780 * 16 13 12 18 18 C 1.53716 * 108.16388 * 129.43199 * 17 16 13 19 19 O 1.42966 * 109.14526 * 52.53955 * 18 17 16 20 20 C 1.42968 * 114.16386 * 297.28986 * 19 18 17 21 21 C 1.47156 * 120.98479 * 90.00158 * 16 13 12 22 22 C 1.35990 * 119.35752 * 180.38355 * 12 11 10 23 23 C 1.40653 * 119.75935 * 359.97438 * 22 12 11 24 24 C 1.34777 * 120.48990 * 0.02562 * 23 22 12 25 25 N 1.37203 * 120.68540 * 359.97438 * 24 23 22 26 26 C 1.34810 * 126.21383 * 179.97438 * 9 7 2 27 27 O 1.21709 * 125.98221 * 359.97438 * 26 9 7 28 28 H 0.97005 * 119.99833 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.68162 * 249.21318 * 17 16 13 30 30 H 1.09001 * 109.68153 * 9.76196 * 17 16 13 31 31 H 1.08997 * 109.65695 * 292.57378 * 18 17 16 32 32 H 1.08993 * 109.48438 * 172.40114 * 18 17 16 33 33 H 1.09000 * 109.51199 * 302.65464 * 20 19 18 34 34 H 1.08999 * 109.54871 * 182.53378 * 20 19 18 35 35 H 1.09002 * 109.68007 * 350.23375 * 21 16 13 36 36 H 1.08997 * 109.68492 * 110.78645 * 21 16 13 37 37 H 1.08000 * 120.12428 * 180.02562 * 22 12 11 38 38 H 1.08007 * 119.75683 * 179.97438 * 23 22 12 39 39 H 1.08006 * 119.65906 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0087 -1.1998 0.0005 8 1 3.0887 -1.1998 0.0050 9 7 1.3239 -2.3857 0.0005 10 7 -0.0695 -2.5374 0.0063 11 6 -0.3333 -3.8308 0.0003 12 6 -1.5507 -4.5458 0.0004 13 16 -3.0880 -3.6849 0.0003 14 8 -2.9974 -2.7018 -1.0217 15 8 -4.1040 -4.6777 0.0359 16 7 -3.1887 -2.8613 1.4335 17 6 -3.7989 -3.4797 2.6212 18 6 -2.8258 -3.3165 3.7999 19 8 -2.4600 -1.9396 3.9187 20 6 -1.7626 -1.4192 2.7843 21 6 -2.6763 -1.4873 1.5554 22 6 -1.5253 -5.9055 0.0012 23 6 -0.2915 -6.5807 0.0013 24 6 0.8660 -5.8902 0.0012 25 7 0.8627 -4.5181 0.0004 26 6 1.8676 -3.6193 0.0005 27 8 3.0572 -3.8765 0.0001 28 1 -0.4850 0.8401 0.0004 29 1 -4.7426 -2.9840 2.8493 30 1 -3.9760 -4.5388 2.4337 31 1 -1.9330 -3.9165 3.6239 32 1 -3.3100 -3.6453 4.7193 33 1 -0.8659 -2.0123 2.6047 34 1 -1.4820 -0.3829 2.9725 35 1 -2.1094 -1.2263 0.6616 36 1 -3.5087 -0.7945 1.6779 37 1 -2.4492 -6.4649 0.0008 38 1 -0.2713 -7.6606 0.0023 39 1 1.8058 -6.4223 0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065129376.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:41 Heat of formation + Delta-G solvation = -38.321234 kcal Electronic energy + Delta-G solvation = -31588.398466 eV Core-core repulsion = 27239.950099 eV Total energy + Delta-G solvation = -4348.448367 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.088 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.73721 -40.09609 -39.32398 -38.39168 -37.77327 -36.98066 -35.77196 -35.57037 -34.28594 -32.69986 -32.23108 -29.94103 -28.12795 -27.93347 -25.33028 -25.11667 -24.13129 -23.27136 -22.33965 -20.23557 -20.06350 -19.32992 -18.86886 -18.30309 -17.87668 -17.78425 -17.32235 -16.95926 -16.84955 -16.51512 -16.27134 -15.95472 -15.88667 -15.57618 -15.40377 -15.02201 -14.44156 -14.36914 -13.71083 -13.61048 -13.50940 -13.46408 -13.27011 -13.20886 -13.04558 -12.90224 -12.72011 -12.67696 -12.39926 -12.29487 -12.23004 -12.05278 -11.86590 -11.47360 -11.40356 -11.21686 -11.00851 -10.39045 -9.82321 -8.85759 -8.50166 -6.25518 -0.83283 -0.57546 0.62690 1.04385 1.32209 1.45105 1.58864 1.68286 1.86692 2.19157 2.26374 2.47950 2.63968 2.92456 3.02239 3.24895 3.43224 3.73453 3.74800 3.85287 3.96070 4.10830 4.18918 4.31436 4.35246 4.41662 4.52301 4.58100 4.68472 4.79899 4.86734 4.91320 4.97913 5.05471 5.13979 5.25583 5.35530 5.54156 5.60879 5.95608 6.18259 6.28964 6.75022 7.08912 7.50348 8.49265 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.006256 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.216021 B = 4474.621246 C = 5908.283547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.014 3.986 3 Si 1.010 2.990 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.338 4.338 8 H 0.112 0.888 9 N -0.230 5.230 10 N -0.237 5.237 11 C 0.224 3.776 12 C -0.696 4.696 13 S 2.718 3.282 14 O -0.977 6.977 15 O -0.959 6.959 16 N -0.995 5.995 17 C 0.081 3.919 18 C 0.042 3.958 19 O -0.394 6.394 20 C 0.075 3.925 21 C 0.089 3.911 22 C 0.074 3.926 23 C -0.192 4.192 24 C 0.149 3.851 25 N -0.462 5.462 26 C 0.514 3.486 27 O -0.633 6.633 28 H 0.284 0.716 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.042 0.958 32 H 0.138 0.862 33 H 0.027 0.973 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.199 0.801 38 H 0.216 0.784 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 -9.862 6.221 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.199 4.199 3 Si 0.829 3.171 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.129 0.871 9 N -0.030 5.030 10 N -0.067 5.067 11 C -0.037 4.037 12 C -0.787 4.787 13 S 2.808 3.192 14 O -0.967 6.967 15 O -0.950 6.950 16 N -0.835 5.835 17 C -0.043 4.043 18 C -0.036 4.036 19 O -0.313 6.313 20 C -0.003 4.003 21 C -0.036 4.036 22 C 0.048 3.952 23 C -0.216 4.216 24 C 0.027 3.973 25 N -0.174 5.174 26 C 0.219 3.781 27 O -0.519 6.519 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.061 0.939 32 H 0.155 0.845 33 H 0.045 0.955 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.216 0.784 38 H 0.233 0.767 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.385 -8.588 5.722 14.640 hybrid contribution 2.046 -0.086 -0.289 2.068 sum -8.338 -8.675 5.433 13.202 Atomic orbital electron populations 1.70259 1.06647 1.29410 1.36727 1.26371 0.96884 1.02361 0.94271 0.84668 0.78132 0.75260 0.79003 1.19011 1.19229 1.18304 1.19952 0.91957 0.79853 1.54846 0.87055 1.44893 1.02697 1.04912 1.50533 1.78820 0.92728 1.08923 1.26208 1.20892 0.87080 0.89192 1.06496 1.30031 1.15003 1.06378 1.27269 1.01130 0.72903 0.72569 0.72575 1.93584 1.87062 1.60168 1.55921 1.93525 1.54095 1.60595 1.86746 1.57671 1.73482 1.24288 1.28010 1.22519 0.97214 1.00530 0.84068 1.23253 0.97706 0.82423 1.00182 1.87876 1.76456 1.26849 1.40114 1.22529 0.92882 0.99525 0.85402 1.22203 0.98424 0.81413 1.01599 1.21742 1.01908 0.90376 0.81157 1.21424 0.88610 1.03300 1.08230 1.22705 1.03550 0.79045 0.92028 1.43458 1.08368 1.07961 1.57634 1.16548 0.84854 0.82437 0.94270 1.90795 1.12483 1.81423 1.67174 0.90557 0.88196 0.86242 0.93913 0.84450 0.95464 0.88392 0.87063 0.89746 0.78415 0.76724 0.79611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.42 10.89 21.59 0.24 -40.19 16 2 C 0.01 0.69 5.49 84.80 0.47 1.15 16 3 Si 1.01 38.98 29.55 68.60 2.03 41.01 16 4 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.34 -18.84 10.08 83.97 0.85 -17.99 16 8 H 0.11 6.27 7.80 -2.91 -0.02 6.24 16 9 N -0.23 -12.94 3.68 -320.96 -1.18 -14.13 16 10 N -0.24 -12.23 9.40 -54.93 -0.52 -12.74 16 11 C 0.22 9.95 7.55 134.05 1.01 10.96 16 12 C -0.70 -23.86 5.93 22.47 0.13 -23.72 16 13 S 2.72 92.97 5.65 -56.49 -0.32 92.65 16 14 O -0.98 -42.92 16.75 -128.00 -2.14 -45.07 16 15 O -0.96 -29.26 15.77 -128.00 -2.02 -31.27 16 16 N -0.99 -30.89 3.34 -510.85 -1.70 -32.59 16 17 C 0.08 1.79 6.60 86.50 0.57 2.36 16 18 C 0.04 0.97 7.00 72.22 0.51 1.48 16 19 O -0.39 -12.14 10.74 -148.98 -1.60 -13.74 16 20 C 0.07 2.67 6.98 72.08 0.50 3.17 16 21 C 0.09 3.15 6.49 86.35 0.56 3.71 16 22 C 0.07 1.73 9.58 22.34 0.21 1.94 16 23 C -0.19 -3.87 9.97 22.06 0.22 -3.65 16 24 C 0.15 4.44 10.89 83.06 0.90 5.35 16 25 N -0.46 -20.24 2.91 -482.81 -1.41 -21.64 16 26 C 0.51 27.84 8.61 179.03 1.54 29.39 16 27 O -0.63 -36.94 17.81 -4.38 -0.08 -37.02 16 28 H 0.28 13.03 8.31 -92.70 -0.77 12.26 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.12 2.03 7.24 -2.39 -0.02 2.01 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.11 4.80 5.29 -2.39 -0.01 4.78 16 36 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.20 2.94 7.33 -2.91 -0.02 2.92 16 38 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -81.38 343.94 -0.12 -81.50 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.11 Total: 19.09 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 7.48 Total: 14.15 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -4.57 Total: -121.29 kcal Atomic # 8 Polarization: -121.26 SS G_CDS: -5.84 Total: -127.10 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Atomic # 16 Polarization: 92.97 SS G_CDS: -0.32 Total: 92.65 kcal Total: -81.38 -0.12 -81.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065129376.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.179 kcal (2) G-P(sol) polarization free energy of solvation -81.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds