Wall clock time and date at job start Tue Mar 31 2020 05:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48500 * 109.46887 * 270.00357 * 3 2 1 5 5 H 1.48490 * 109.47123 * 30.00071 * 3 2 1 6 6 H 1.48493 * 109.46786 * 150.00391 * 3 2 1 7 7 C 1.38535 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99944 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.40181 * 126.21393 * 359.69592 * 9 7 2 11 11 C 1.31993 * 107.73404 * 180.26184 * 10 9 7 12 12 C 1.41198 * 131.94948 * 179.97438 * 11 10 9 13 13 C 1.35994 * 119.35786 * 180.02562 * 12 11 10 14 14 C 1.40657 * 119.75802 * 359.97438 * 13 12 11 15 15 S 1.76199 * 119.75588 * 180.02562 * 14 13 12 16 16 O 1.42099 * 106.40353 * 23.55951 * 15 14 13 17 17 O 1.42098 * 106.40341 * 156.48413 * 15 14 13 18 18 N 1.65599 * 107.21512 * 270.02151 * 15 14 13 19 19 C 1.47152 * 120.98503 * 269.71627 * 18 15 14 20 20 C 1.53711 * 108.16370 * 129.43126 * 19 18 15 21 21 O 1.42966 * 109.14438 * 52.54238 * 20 19 18 22 22 C 1.42960 * 114.16566 * 297.28443 * 21 20 19 23 23 C 1.47153 * 120.98174 * 90.00178 * 18 15 14 24 24 C 1.34782 * 120.48846 * 0.02562 * 14 13 12 25 25 N 1.37200 * 120.68544 * 359.97438 * 24 14 13 26 26 C 1.34804 * 126.21690 * 180.02562 * 9 7 2 27 27 O 1.21705 * 125.98196 * 359.74054 * 26 9 7 28 28 H 0.96998 * 120.00461 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.31677 * 0.02562 * 12 11 10 30 30 H 1.07998 * 120.12248 * 180.02562 * 13 12 11 31 31 H 1.09004 * 109.68188 * 249.21799 * 19 18 15 32 32 H 1.09000 * 109.67724 * 9.76550 * 19 18 15 33 33 H 1.08996 * 109.65701 * 292.57871 * 20 19 18 34 34 H 1.08998 * 109.48414 * 172.39766 * 20 19 18 35 35 H 1.08997 * 109.51733 * 302.65768 * 22 21 20 36 36 H 1.09000 * 109.55148 * 182.52700 * 22 21 20 37 37 H 1.08997 * 109.68162 * 350.23276 * 23 18 15 38 38 H 1.09001 * 109.68308 * 110.74949 * 23 18 15 39 39 H 1.07999 * 119.65829 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4974 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5476 1.4401 0.6999 7 6 2.0088 -1.1997 -0.0005 8 1 3.0887 -1.1997 -0.0010 9 7 1.3241 -2.3857 -0.0005 10 7 -0.0695 -2.5375 0.0060 11 6 -0.3330 -3.8308 0.0093 12 6 -1.5505 -4.5460 0.0164 13 6 -1.5250 -5.9057 0.0190 14 6 -0.2911 -6.5808 0.0140 15 16 -0.2581 -8.3425 0.0166 16 8 -1.5026 -8.7679 -0.5215 17 8 0.9964 -8.7212 -0.5329 18 7 -0.2417 -8.8300 1.5991 19 6 1.0271 -9.0355 2.3154 20 6 0.9576 -8.2652 3.6438 21 8 -0.2326 -8.6402 4.3415 22 6 -1.4422 -8.3096 3.6550 23 6 -1.4956 -9.0767 2.3287 24 6 0.8663 -5.8902 0.0072 25 7 0.8629 -4.5182 0.0045 26 6 1.8678 -3.6193 -0.0005 27 8 3.0573 -3.8764 -0.0050 28 1 -0.4851 0.8400 0.0004 29 1 -2.4927 -4.0182 0.0198 30 1 -2.4488 -6.4651 0.0240 31 1 1.1704 -10.0982 2.5110 32 1 1.8537 -8.6578 1.7135 33 1 0.9412 -7.1935 3.4457 34 1 1.8285 -8.5099 4.2519 35 1 -1.4673 -7.2380 3.4570 36 1 -2.2982 -8.5863 4.2703 37 1 -2.3404 -8.7263 1.7358 38 1 -1.6023 -10.1435 2.5251 39 1 1.8062 -6.4222 0.0038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065198798.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:21 Heat of formation + Delta-G solvation = -17.269671 kcal Electronic energy + Delta-G solvation = -29997.225268 eV Core-core repulsion = 25649.689765 eV Total energy + Delta-G solvation = -4347.535503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 354.088 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -42.14411 -39.41263 -37.77140 -37.38605 -36.06850 -35.93156 -35.04448 -33.97452 -32.60582 -31.64693 -31.14247 -28.51744 -27.30983 -26.43917 -24.48542 -23.76270 -22.67699 -21.69758 -21.37721 -19.28837 -18.58578 -18.38363 -17.62901 -16.78531 -16.66187 -16.50586 -16.13307 -15.86793 -15.55985 -15.31883 -15.24443 -14.88467 -14.57978 -14.45910 -14.30044 -14.05001 -13.27400 -12.90170 -12.89272 -12.35158 -12.32301 -12.17612 -12.04876 -11.90416 -11.80802 -11.77921 -11.66071 -11.38968 -11.23046 -11.10144 -10.77539 -10.72218 -10.62634 -10.43498 -10.31248 -9.86200 -9.26549 -9.11726 -8.77493 -7.21295 -6.80759 -4.41986 0.24388 0.87074 1.65361 2.52502 2.80488 2.90789 3.00527 3.06530 3.51237 3.58259 3.61662 3.75470 3.82658 4.08865 4.20458 4.44483 4.52112 4.61890 4.78778 4.83848 4.88522 4.93903 4.99016 5.10265 5.30329 5.32820 5.36959 5.51375 5.54537 5.60660 5.66987 5.79360 6.04057 6.19576 6.28770 6.59895 6.71548 6.85782 6.89161 7.10739 7.62462 8.01022 8.48061 8.82419 9.23610 10.17822 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.003155 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.606346 B = 8872.194708 C = 9081.469904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.039 3.961 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.290 4.290 8 H 0.130 0.870 9 N -0.214 5.214 10 N -0.191 5.191 11 C 0.165 3.835 12 C -0.072 4.072 13 C -0.069 4.069 14 C -0.741 4.741 15 S 2.711 3.289 16 O -0.950 6.950 17 O -0.957 6.957 18 N -1.002 6.002 19 C 0.086 3.914 20 C 0.045 3.955 21 O -0.378 6.378 22 C 0.045 3.955 23 C 0.089 3.911 24 C 0.261 3.739 25 N -0.458 5.458 26 C 0.540 3.460 27 O -0.584 6.584 28 H 0.279 0.721 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -14.069 6.297 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.420 4.420 8 H 0.148 0.852 9 N -0.015 5.015 10 N -0.021 5.021 11 C -0.092 4.092 12 C -0.095 4.095 13 C -0.095 4.095 14 C -0.835 4.835 15 S 2.801 3.199 16 O -0.940 6.940 17 O -0.947 6.947 18 N -0.841 5.841 19 C -0.039 4.039 20 C -0.033 4.033 21 O -0.296 6.296 22 C -0.034 4.034 23 C -0.037 4.037 24 C 0.131 3.869 25 N -0.171 5.171 26 C 0.246 3.754 27 O -0.466 6.466 28 H 0.089 0.911 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.952 -13.465 5.739 15.452 hybrid contribution 0.531 1.005 -0.044 1.137 sum -4.421 -12.461 5.695 14.396 Atomic orbital electron populations 1.70243 1.05928 1.28652 1.36799 1.25644 0.96041 1.00386 0.95439 0.85619 0.79370 0.78831 0.79254 1.19339 1.19882 1.18513 1.19894 0.92231 0.78594 1.51291 0.85229 1.44832 1.02138 1.04659 1.49916 1.78937 0.93341 1.08340 1.21447 1.21674 0.87326 0.89313 1.10909 1.19991 0.94332 0.92843 1.02352 1.20063 0.95071 0.93683 1.00693 1.30258 0.98723 1.26252 1.28309 1.01492 0.73484 0.73089 0.71828 1.93559 1.44312 1.80466 1.75699 1.93582 1.43709 1.81961 1.75494 1.57939 1.12122 1.82592 1.31459 1.22236 0.85100 1.02187 0.94387 1.23074 0.88509 0.98707 0.93024 1.87947 1.13705 1.82744 1.45202 1.23002 0.88004 0.99205 0.93149 1.22127 0.85555 1.01800 0.94171 1.21293 0.98827 0.81702 0.85043 1.43542 1.10268 1.05958 1.57288 1.16369 0.84557 0.81790 0.92652 1.90897 1.10941 1.80631 1.64093 0.91070 0.83374 0.83887 0.89768 0.88144 0.92235 0.87559 0.92102 0.87646 0.88020 0.90014 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.26 11.82 55.47 0.66 -19.60 16 2 C 0.04 0.97 5.49 -17.54 -0.10 0.88 16 3 Si 0.95 18.51 29.55 -169.99 -5.02 13.49 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.29 -7.72 10.08 -15.16 -0.15 -7.87 16 8 H 0.13 3.34 7.80 -52.49 -0.41 2.93 16 9 N -0.21 -5.79 3.68 -15.44 -0.06 -5.85 16 10 N -0.19 -4.90 10.48 31.28 0.33 -4.57 16 11 C 0.16 3.59 7.86 -155.60 -1.22 2.37 16 12 C -0.07 -1.21 10.11 -39.26 -0.40 -1.61 16 13 C -0.07 -0.99 9.53 -39.47 -0.38 -1.37 16 14 C -0.74 -10.96 5.94 -39.89 -0.24 -11.20 16 15 S 2.71 34.78 5.69 -107.50 -0.61 34.17 16 16 O -0.95 -13.53 16.10 -57.17 -0.92 -14.45 16 17 O -0.96 -14.40 15.99 -57.17 -0.91 -15.32 16 18 N -1.00 -10.13 3.34 -112.82 -0.38 -10.50 16 19 C 0.09 0.78 6.60 -3.32 -0.02 0.75 16 20 C 0.05 0.41 7.00 37.53 0.26 0.67 16 21 O -0.38 -3.84 10.74 -35.23 -0.38 -4.22 16 22 C 0.04 0.37 6.99 37.31 0.26 0.63 16 23 C 0.09 0.73 6.57 -3.53 -0.02 0.71 16 24 C 0.26 4.57 10.36 -16.37 -0.17 4.40 16 25 N -0.46 -10.06 2.91 -66.61 -0.19 -10.26 16 26 C 0.54 14.01 8.61 -86.85 -0.75 13.26 16 27 O -0.58 -16.09 17.81 5.18 0.09 -15.99 16 28 H 0.28 6.55 8.31 -40.82 -0.34 6.21 16 29 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 30 H 0.14 1.59 7.65 -52.49 -0.40 1.19 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.88 7.24 -51.93 -0.38 0.50 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.74 7.25 -51.93 -0.38 0.36 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.17 2.68 7.50 -52.49 -0.39 2.28 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -34.92 347.23 -9.14 -44.06 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.05 Total: 2.18 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.92 Total: 1.62 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.36 Total: -50.78 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -2.12 Total: -49.97 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.49 kcal Atomic # 16 Polarization: 34.78 SS G_CDS: -0.61 Total: 34.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.92 -9.14 -44.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065198798.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.788 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds