Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.50698 * 109.47387 * 119.99880 * 2 1 3 5 5 H 1.07999 * 120.00181 * 119.99635 * 4 2 1 6 6 C 1.37879 * 120.00000 * 300.00183 * 4 2 1 7 7 N 1.31509 * 120.00111 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99810 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47592 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46806 * 120.00321 * 8 6 4 11 11 H 1.48504 * 109.46778 * 239.99753 * 8 6 4 12 12 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 13 13 C 1.34777 * 119.99724 * 85.00158 * 12 2 1 14 14 O 1.21553 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.47849 * 119.99699 * 179.72334 * 13 12 2 16 16 C 1.39579 * 120.14305 * 359.97438 * 15 13 12 17 17 C 1.37953 * 119.85070 * 179.76580 * 16 15 13 18 18 C 1.50699 * 119.93087 * 180.27476 * 17 16 15 19 19 F 1.39895 * 109.47382 * 270.23903 * 18 17 16 20 20 F 1.39902 * 109.46874 * 30.23731 * 18 17 16 21 21 F 1.39902 * 109.47527 * 150.23207 * 18 17 16 22 22 C 1.38367 * 120.14581 * 0.50841 * 17 16 15 23 23 C 1.38360 * 120.29116 * 359.74659 * 22 17 16 24 24 C 1.50696 * 119.92738 * 179.97438 * 23 22 17 25 25 F 1.39903 * 109.47059 * 180.02562 * 24 23 22 26 26 F 1.39901 * 109.47006 * 300.01801 * 24 23 22 27 27 F 1.39894 * 109.47094 * 60.01939 * 24 23 22 28 28 C 1.37965 * 120.14340 * 359.97438 * 23 22 17 29 29 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47061 * 300.00127 * 1 2 3 31 31 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 32 32 H 0.97000 * 120.00320 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99792 * 264.99726 * 12 2 1 34 34 H 1.07997 * 120.07561 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.85286 * 179.71556 * 22 17 16 36 36 H 1.07998 * 120.06931 * 179.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.1455 -2.2876 3.6038 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5866 4.8161 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1610 -2.4119 15 6 2.6457 -0.7137 -3.5628 16 6 2.9845 -2.0664 -3.5019 17 6 3.4445 -2.7106 -4.6317 18 6 3.8049 -4.1725 -4.5696 19 9 5.1536 -4.3060 -4.2226 20 9 3.0111 -4.8080 -3.6087 21 9 3.5845 -4.7608 -5.8196 22 6 3.5804 -2.0162 -5.8208 23 6 3.2513 -0.6739 -5.8866 24 6 3.4030 0.0746 -7.1857 25 9 3.0122 1.4058 -7.0053 26 9 4.7403 0.0327 -7.5946 27 9 2.5977 -0.5197 -8.1631 28 6 2.7847 -0.0192 -4.7654 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7089 1.1614 3.4844 33 1 2.2490 -1.6318 -1.1526 34 1 2.8834 -2.6084 -2.5732 35 1 3.9454 -2.5240 -6.7013 36 1 2.5286 1.0287 -4.8180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065516109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = -314.664431 kcal Electronic energy + Delta-G solvation = -31609.959004 eV Core-core repulsion = 26036.191746 eV Total energy + Delta-G solvation = -5573.767258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.48566 -50.46229 -47.99325 -47.96841 -47.93645 -47.91947 -40.44505 -38.50789 -35.06321 -33.28468 -32.69224 -32.01760 -28.97929 -26.62045 -26.42129 -25.37563 -24.30826 -22.25148 -21.35005 -19.98101 -19.31910 -18.91834 -18.83233 -18.76286 -18.46939 -17.37094 -17.12371 -16.80486 -16.12938 -15.58106 -15.12391 -14.91338 -14.80385 -14.73283 -14.57495 -14.53573 -14.36507 -14.35167 -14.30679 -14.10469 -14.09879 -14.06895 -14.06827 -13.44876 -13.22221 -13.15890 -12.98915 -12.51558 -12.26545 -11.84067 -11.80677 -11.19006 -11.06106 -10.88226 -10.41136 -10.33414 -9.99444 -9.64669 -9.50363 -9.16160 -8.67044 -8.15041 -6.21799 -4.31936 0.20386 0.26572 2.14199 2.33407 2.39978 3.18706 3.24125 3.26675 3.28790 3.30742 3.44088 3.60898 3.77379 3.84172 4.02090 4.10578 4.20539 4.28250 4.45340 4.57920 4.74993 4.89511 5.10990 5.12960 5.38572 5.54020 5.70074 5.94240 6.70192 6.81993 7.00758 7.21631 7.37842 7.56844 7.77143 8.02357 8.39739 8.60280 8.82997 9.35723 10.84202 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.003186 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.670727 B = 8786.143188 C =10672.545283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.695 5.695 13 C 0.542 3.458 14 O -0.538 6.538 15 C -0.116 4.116 16 C -0.010 4.010 17 C -0.192 4.192 18 C 0.514 3.486 19 F -0.171 7.171 20 F -0.170 7.170 21 F -0.175 7.175 22 C -0.007 4.007 23 C -0.194 4.194 24 C 0.515 3.485 25 F -0.170 7.170 26 F -0.173 7.173 27 F -0.173 7.173 28 C 0.011 3.989 29 H 0.028 0.972 30 H 0.093 0.907 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.389 0.611 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 -8.004 -18.600 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.343 5.343 13 C 0.326 3.674 14 O -0.417 6.417 15 C -0.120 4.120 16 C -0.029 4.029 17 C -0.193 4.193 18 C 0.460 3.540 19 F -0.153 7.153 20 F -0.151 7.151 21 F -0.156 7.156 22 C -0.026 4.026 23 C -0.196 4.196 24 C 0.461 3.539 25 F -0.151 7.151 26 F -0.155 7.155 27 F -0.155 7.155 28 C -0.007 4.007 29 H 0.047 0.953 30 H 0.111 0.889 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.178 -7.050 -18.457 20.425 hybrid contribution 0.500 -1.108 0.656 1.381 sum 5.678 -8.158 -17.801 20.388 Atomic orbital electron populations 1.22093 0.98048 0.99369 1.01170 1.18885 0.91294 0.94123 0.79482 0.92898 1.21209 1.32798 1.13422 0.90160 0.91899 1.24876 0.94674 0.94898 0.99107 1.69898 1.35644 1.22331 1.23987 0.86374 0.78656 0.79540 0.82437 1.19670 1.20799 1.20800 1.46566 1.63842 1.13596 1.10288 1.17900 0.79603 0.86882 0.82997 1.90782 1.51194 1.15114 1.84648 1.20358 1.02494 0.93364 0.95757 1.21457 0.89831 0.93847 0.97796 1.19780 1.10205 0.92896 0.96428 1.18040 0.74999 0.87025 0.73954 1.93259 1.33524 1.96513 1.91965 1.93240 1.73906 1.83904 1.64051 1.93207 1.94484 1.85972 1.41933 1.20711 0.92189 0.92318 0.97361 1.19821 1.10518 0.95263 0.93955 1.18018 0.74171 0.77483 0.84275 1.93219 1.90793 1.35829 1.95232 1.93239 1.34352 1.96269 1.91598 1.93237 1.73521 1.83574 1.65118 1.21407 0.88419 1.01563 0.89355 0.95269 0.88882 0.96485 0.92479 0.77768 0.82960 0.83247 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.31 2.56 -69.08 -0.18 6.14 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.54 -13.54 8.73 -34.44 -0.30 -13.84 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -23.91 11.32 55.43 0.63 -23.28 16 8 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 9 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.70 -13.31 5.02 -55.88 -0.28 -13.59 16 13 C 0.54 9.92 7.74 -12.33 -0.10 9.82 16 14 O -0.54 -11.82 16.01 5.32 0.09 -11.74 16 15 C -0.12 -1.59 5.87 -104.97 -0.62 -2.20 16 16 C -0.01 -0.12 8.89 -39.19 -0.35 -0.47 16 17 C -0.19 -1.92 5.45 -104.68 -0.57 -2.49 16 18 C 0.51 5.02 3.36 36.01 0.12 5.14 16 19 F -0.17 -1.77 17.30 2.25 0.04 -1.73 16 20 F -0.17 -1.77 16.46 2.25 0.04 -1.73 16 21 F -0.17 -1.64 16.45 2.25 0.04 -1.61 16 22 C -0.01 -0.07 8.94 -39.49 -0.35 -0.42 16 23 C -0.19 -2.01 5.37 -104.68 -0.56 -2.57 16 24 C 0.51 5.14 3.31 36.00 0.12 5.26 16 25 F -0.17 -1.84 15.96 2.25 0.04 -1.80 16 26 F -0.17 -1.73 17.24 2.25 0.04 -1.69 16 27 F -0.17 -1.72 17.24 2.25 0.04 -1.68 16 28 C 0.01 0.14 8.98 -39.18 -0.35 -0.21 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.39 6.27 6.57 -40.82 -0.27 6.00 16 34 H 0.15 1.54 5.95 -52.49 -0.31 1.23 16 35 H 0.15 1.06 7.59 -52.49 -0.40 0.66 16 36 H 0.16 2.03 6.74 -52.49 -0.35 1.68 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -28.27 340.46 -4.54 -32.81 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.43 Total: 3.33 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.88 Total: 2.67 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.35 Total: -36.88 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 0.23 Total: -10.24 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.27 -4.54 -32.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065516109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -281.854 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -310.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -314.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds