Wall clock time and date at job start Tue Mar 31 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47211 * 2 1 4 4 N 1.46498 * 109.47132 * 120.00139 * 2 1 3 5 5 C 1.46494 * 120.00004 * 299.99719 * 4 2 1 6 6 C 1.50699 * 109.47529 * 270.00250 * 5 4 2 7 7 H 1.08000 * 119.99727 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00084 * 180.02562 * 6 5 4 9 9 N 1.31503 * 120.00018 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99671 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47062 * 60.00458 * 10 8 6 12 12 H 1.48503 * 109.47118 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47326 * 300.00169 * 10 8 6 14 14 C 1.34769 * 119.99984 * 120.00126 * 4 2 1 15 15 O 1.21285 * 120.00214 * 180.02562 * 14 4 2 16 16 C 1.50710 * 120.00137 * 359.97438 * 14 4 2 17 17 N 1.46499 * 109.47211 * 180.02562 * 16 14 4 18 18 C 1.46499 * 120.00225 * 84.99665 * 17 16 14 19 19 S 1.65600 * 119.99691 * 264.99811 * 17 16 14 20 20 O 1.42102 * 106.40015 * 23.54405 * 19 17 16 21 21 O 1.42097 * 106.40174 * 156.45969 * 19 17 16 22 22 C 1.76194 * 107.22024 * 270.00162 * 19 17 16 23 23 C 1.38240 * 119.99725 * 269.72820 * 22 19 17 24 24 C 1.38238 * 119.99748 * 179.76467 * 23 22 19 25 25 C 1.38234 * 119.99976 * 0.50470 * 24 23 22 26 26 C 1.38238 * 120.00235 * 359.74947 * 25 24 23 27 27 C 1.38234 * 120.00137 * 89.99757 * 22 19 17 28 28 H 1.08998 * 109.47197 * 300.00255 * 1 2 3 29 29 H 1.09006 * 109.46859 * 59.99805 * 1 2 3 30 30 H 1.08995 * 109.47367 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46914 * 240.00470 * 2 1 3 32 32 H 1.08998 * 109.46965 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46934 * 300.00402 * 3 2 1 34 34 H 1.09006 * 109.46995 * 60.00018 * 3 2 1 35 35 H 1.09006 * 109.47280 * 30.00227 * 5 4 2 36 36 H 1.09001 * 109.47281 * 150.00038 * 5 4 2 37 37 H 0.96997 * 120.00073 * 179.97438 * 9 8 6 38 38 H 1.08992 * 109.46813 * 59.99797 * 16 14 4 39 39 H 1.09002 * 109.46899 * 300.00272 * 16 14 4 40 40 H 1.09002 * 109.47391 * 270.00005 * 18 17 16 41 41 H 1.09001 * 109.46813 * 150.00061 * 18 17 16 42 42 H 1.09004 * 109.47041 * 30.00189 * 18 17 16 43 43 H 1.07999 * 120.00461 * 359.97438 * 23 22 19 44 44 H 1.08004 * 119.99856 * 180.23373 * 24 23 22 45 45 H 1.07997 * 120.00067 * 179.72568 * 25 24 23 46 46 H 1.07997 * 120.00606 * 179.97438 * 26 25 24 47 47 H 1.07997 * 119.99933 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5432 1.0357 2.3457 8 6 2.5817 1.4100 4.2144 9 7 1.5591 1.1248 4.9906 10 14 3.8696 2.6390 4.7802 11 1 3.9251 3.7736 3.8237 12 1 3.5115 3.1455 6.1295 13 1 5.1965 1.9745 4.8375 14 6 2.7932 -1.7864 1.0725 15 8 3.1971 -2.3584 2.0627 16 6 3.1568 -2.3016 -0.2964 17 7 3.9987 -3.4930 -0.1620 18 6 3.3816 -4.8097 0.0157 19 16 5.6479 -3.3512 -0.2109 20 8 5.9469 -2.0134 0.1638 21 8 6.1684 -4.4840 0.4710 22 6 6.1360 -3.5170 -1.8957 23 6 6.4389 -4.7647 -2.4079 24 6 6.8172 -4.8954 -3.7311 25 6 6.9025 -3.7772 -4.5393 26 6 6.6046 -2.5288 -4.0257 27 6 6.2213 -2.3987 -2.7039 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.6904 0.2974 2.4843 36 1 1.6239 -1.0226 3.2291 37 1 1.4738 1.5524 5.8570 38 1 3.7015 -1.5309 -0.8417 39 1 2.2483 -2.5586 -0.8410 40 1 3.2478 -5.0078 1.0792 41 1 4.0261 -5.5744 -0.4180 42 1 2.4120 -4.8267 -0.4819 43 1 6.3769 -5.6378 -1.7753 44 1 7.0502 -5.8707 -4.1323 45 1 7.2022 -3.8787 -5.5718 46 1 6.6716 -1.6551 -4.6569 47 1 5.9892 -1.4234 -2.3024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065610035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:21 Heat of formation + Delta-G solvation = -68.471672 kcal Electronic energy + Delta-G solvation = -30653.022408 eV Core-core repulsion = 26542.640057 eV Total energy + Delta-G solvation = -4110.382350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.37649 -39.31442 -37.19243 -36.36507 -35.72292 -35.33035 -32.75875 -31.58965 -31.35701 -30.82446 -29.20584 -27.01513 -26.67153 -25.02504 -23.45729 -23.04940 -22.62644 -21.29747 -19.28942 -18.57957 -17.76222 -17.51247 -16.85603 -16.36204 -16.23536 -16.18168 -15.44668 -14.91048 -14.81469 -14.47263 -14.29669 -14.03050 -13.85489 -13.66071 -13.44155 -13.39066 -13.02489 -12.87718 -12.55741 -12.49214 -12.28449 -12.02561 -11.96509 -11.69223 -11.61641 -11.58624 -11.53696 -11.44553 -11.11818 -10.89135 -10.87080 -10.81577 -10.52512 -10.34886 -9.96072 -9.78875 -9.65967 -9.46310 -9.38138 -8.54383 -8.33794 -7.61446 -5.95970 -3.98376 0.24730 0.58489 0.95556 2.84114 3.27384 3.37617 3.39855 3.43172 3.50074 3.79816 3.98467 4.19081 4.52921 4.54501 4.55287 4.61969 4.67248 4.97192 5.02937 5.06770 5.20386 5.26770 5.33552 5.34844 5.38802 5.48157 5.55600 5.58209 5.64063 5.77047 5.83356 5.87478 5.95169 5.99418 6.00818 6.14870 6.25719 6.39213 6.42681 6.49006 6.60625 7.00484 7.14959 7.52420 7.62072 8.01628 8.33468 8.46361 8.98835 9.13943 9.65596 11.12271 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.003263 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.841639 B = 8578.048542 C = 8857.377480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.159 4.159 4 N -0.592 5.592 5 C 0.247 3.753 6 C -0.518 4.518 7 H 0.060 0.940 8 C 0.060 3.940 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.489 3.511 15 O -0.529 6.529 16 C 0.103 3.897 17 N -0.980 5.980 18 C 0.096 3.904 19 S 2.691 3.309 20 O -0.939 6.939 21 O -0.951 6.951 22 C -0.677 4.677 23 C -0.022 4.022 24 C -0.143 4.143 25 C -0.068 4.068 26 C -0.141 4.141 27 C -0.021 4.021 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -10.082 -23.299 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 C -0.217 4.217 4 N -0.325 5.325 5 C 0.128 3.872 6 C -0.557 4.557 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.273 3.727 15 O -0.405 6.405 16 C -0.026 4.026 17 N -0.818 5.818 18 C -0.049 4.049 19 S 2.779 3.221 20 O -0.929 6.929 21 O -0.941 6.941 22 C -0.763 4.763 23 C -0.041 4.041 24 C -0.161 4.161 25 C -0.087 4.087 26 C -0.159 4.159 27 C -0.040 4.040 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.929 -10.222 -21.875 24.463 hybrid contribution 0.588 0.713 -0.452 1.029 sum 4.517 -9.509 -22.327 24.685 Atomic orbital electron populations 1.22162 0.95473 1.01771 1.02564 1.21017 0.94200 0.94389 0.87680 1.22164 1.01660 0.95522 1.02373 1.48346 1.49146 1.26220 1.08761 1.19235 0.95840 0.94974 0.77125 1.21450 1.08888 1.23240 1.02154 0.92191 1.24910 0.95713 0.97180 0.96328 1.69916 1.29598 1.43517 1.10683 0.86624 0.82303 0.81285 0.77637 1.20261 1.21345 1.20120 1.20660 0.79697 0.81435 0.90881 1.90676 1.52678 1.58000 1.39152 1.21315 0.96965 0.87116 0.97187 1.56994 1.24089 1.12766 1.87910 1.21513 0.98707 0.81417 1.03233 1.02252 0.72144 0.73987 0.73677 1.93635 1.82407 1.36215 1.80619 1.93561 1.77305 1.52636 1.70628 1.31318 1.17685 1.00090 1.27179 1.20979 0.91915 0.95670 0.95579 1.21312 1.01514 0.99259 0.94047 1.21497 0.94598 0.92771 0.99800 1.21336 1.00929 0.98025 0.95658 1.21029 0.92116 0.97525 0.93327 0.91182 0.92258 0.92929 0.91064 0.92453 0.93257 0.89927 0.94739 0.94094 0.92831 0.87865 0.87766 0.91278 0.91264 0.90945 0.84264 0.85046 0.85279 0.84921 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.17 37.16 0.34 -1.87 16 2 C 0.13 2.05 3.17 -67.93 -0.22 1.83 16 3 C -0.16 -2.57 8.47 37.16 0.31 -2.26 16 4 N -0.59 -12.28 2.39 -167.46 -0.40 -12.68 16 5 C 0.25 6.39 4.59 -5.20 -0.02 6.36 16 6 C -0.52 -14.73 7.83 -34.44 -0.27 -15.00 16 7 H 0.06 1.73 7.63 -52.49 -0.40 1.33 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 10 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.49 10.18 7.74 -10.98 -0.08 10.09 16 15 O -0.53 -13.54 16.00 5.55 0.09 -13.45 16 16 C 0.10 1.49 4.16 -5.19 -0.02 1.47 16 17 N -0.98 -14.02 2.68 -123.05 -0.33 -14.35 16 18 C 0.10 1.12 10.32 59.85 0.62 1.74 16 19 S 2.69 42.40 5.60 -107.50 -0.60 41.80 16 20 O -0.94 -18.26 16.25 -57.17 -0.93 -19.19 16 21 O -0.95 -16.88 16.35 -57.17 -0.93 -17.81 16 22 C -0.68 -8.06 5.97 -39.58 -0.24 -8.29 16 23 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 24 C -0.14 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.07 -0.50 10.05 -39.58 -0.40 -0.90 16 26 C -0.14 -1.17 10.05 -39.58 -0.40 -1.56 16 27 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 28 H 0.07 1.12 6.66 -51.93 -0.35 0.78 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.85 5.77 -51.93 -0.30 0.55 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 35 H 0.03 0.89 6.43 -51.93 -0.33 0.56 16 36 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.10 1.30 7.25 -51.93 -0.38 0.92 16 39 H 0.10 1.07 7.61 -51.93 -0.40 0.68 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.63 7.79 -51.93 -0.40 0.23 16 42 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 43 H 0.14 1.24 7.61 -52.49 -0.40 0.84 16 44 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.14 1.41 7.62 -52.49 -0.40 1.01 16 LS Contribution 399.32 15.07 6.02 6.02 Total: -1.00 -38.70 399.32 -10.03 -48.73 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.03 Total: -0.92 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.62 Total: -9.47 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.01 Total: -53.18 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -1.78 Total: -50.45 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Atomic # 16 Polarization: 42.40 SS G_CDS: -0.60 Total: 41.80 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.70 -10.03 -48.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065610035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.743 kcal (2) G-P(sol) polarization free energy of solvation -38.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds