Wall clock time and date at job start Tue Mar 31 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.47211 * 2 1 4 4 N 1.46498 * 109.47132 * 120.00139 * 2 1 3 5 5 C 1.46494 * 120.00004 * 299.99719 * 4 2 1 6 6 C 1.50699 * 109.47529 * 270.00250 * 5 4 2 7 7 H 1.08000 * 119.99727 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00084 * 180.02562 * 6 5 4 9 9 N 1.31503 * 120.00018 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99671 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47062 * 60.00458 * 10 8 6 12 12 H 1.48503 * 109.47118 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47326 * 300.00169 * 10 8 6 14 14 C 1.34769 * 119.99984 * 120.00126 * 4 2 1 15 15 O 1.21285 * 120.00214 * 180.02562 * 14 4 2 16 16 C 1.50710 * 120.00137 * 359.97438 * 14 4 2 17 17 N 1.46499 * 109.47211 * 180.02562 * 16 14 4 18 18 C 1.46499 * 120.00225 * 84.99665 * 17 16 14 19 19 S 1.65600 * 119.99691 * 264.99811 * 17 16 14 20 20 O 1.42102 * 106.40015 * 23.54405 * 19 17 16 21 21 O 1.42097 * 106.40174 * 156.45969 * 19 17 16 22 22 C 1.76194 * 107.22024 * 270.00162 * 19 17 16 23 23 C 1.38240 * 119.99725 * 269.72820 * 22 19 17 24 24 C 1.38238 * 119.99748 * 179.76467 * 23 22 19 25 25 C 1.38234 * 119.99976 * 0.50470 * 24 23 22 26 26 C 1.38238 * 120.00235 * 359.74947 * 25 24 23 27 27 C 1.38234 * 120.00137 * 89.99757 * 22 19 17 28 28 H 1.08998 * 109.47197 * 300.00255 * 1 2 3 29 29 H 1.09006 * 109.46859 * 59.99805 * 1 2 3 30 30 H 1.08995 * 109.47367 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46914 * 240.00470 * 2 1 3 32 32 H 1.08998 * 109.46965 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46934 * 300.00402 * 3 2 1 34 34 H 1.09006 * 109.46995 * 60.00018 * 3 2 1 35 35 H 1.09006 * 109.47280 * 30.00227 * 5 4 2 36 36 H 1.09001 * 109.47281 * 150.00038 * 5 4 2 37 37 H 0.96997 * 120.00073 * 179.97438 * 9 8 6 38 38 H 1.08992 * 109.46813 * 59.99797 * 16 14 4 39 39 H 1.09002 * 109.46899 * 300.00272 * 16 14 4 40 40 H 1.09002 * 109.47391 * 270.00005 * 18 17 16 41 41 H 1.09001 * 109.46813 * 150.00061 * 18 17 16 42 42 H 1.09004 * 109.47041 * 30.00189 * 18 17 16 43 43 H 1.07999 * 120.00461 * 359.97438 * 23 22 19 44 44 H 1.08004 * 119.99856 * 180.23373 * 24 23 22 45 45 H 1.07997 * 120.00067 * 179.72568 * 25 24 23 46 46 H 1.07997 * 120.00606 * 179.97438 * 26 25 24 47 47 H 1.07997 * 119.99933 * 0.02562 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5432 1.0357 2.3457 8 6 2.5817 1.4100 4.2144 9 7 1.5591 1.1248 4.9906 10 14 3.8696 2.6390 4.7802 11 1 3.9251 3.7736 3.8237 12 1 3.5115 3.1455 6.1295 13 1 5.1965 1.9745 4.8375 14 6 2.7932 -1.7864 1.0725 15 8 3.1971 -2.3584 2.0627 16 6 3.1568 -2.3016 -0.2964 17 7 3.9987 -3.4930 -0.1620 18 6 3.3816 -4.8097 0.0157 19 16 5.6479 -3.3512 -0.2109 20 8 5.9469 -2.0134 0.1638 21 8 6.1684 -4.4840 0.4710 22 6 6.1360 -3.5170 -1.8957 23 6 6.4389 -4.7647 -2.4079 24 6 6.8172 -4.8954 -3.7311 25 6 6.9025 -3.7772 -4.5393 26 6 6.6046 -2.5288 -4.0257 27 6 6.2213 -2.3987 -2.7039 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.6904 0.2974 2.4843 36 1 1.6239 -1.0226 3.2291 37 1 1.4738 1.5524 5.8570 38 1 3.7015 -1.5309 -0.8417 39 1 2.2483 -2.5586 -0.8410 40 1 3.2478 -5.0078 1.0792 41 1 4.0261 -5.5744 -0.4180 42 1 2.4120 -4.8267 -0.4819 43 1 6.3769 -5.6378 -1.7753 44 1 7.0502 -5.8707 -4.1323 45 1 7.2022 -3.8787 -5.5718 46 1 6.6716 -1.6551 -4.6569 47 1 5.9892 -1.4234 -2.3024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065610035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:20 Heat of formation + Delta-G solvation = -96.858903 kcal Electronic energy + Delta-G solvation = -30654.253370 eV Core-core repulsion = 26542.640057 eV Total energy + Delta-G solvation = -4111.613313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.89536 -40.04119 -38.49828 -37.77846 -37.04103 -36.69135 -34.91287 -32.39155 -32.28416 -32.00687 -30.70218 -28.67722 -27.90104 -26.32799 -24.61291 -24.15428 -23.69636 -22.70312 -20.47251 -19.80080 -18.94330 -18.75125 -18.56040 -18.18509 -17.44989 -16.98485 -16.82501 -16.36722 -15.93115 -15.82777 -15.56203 -15.24345 -15.04599 -14.80823 -14.52406 -14.48893 -14.17070 -14.05896 -13.95435 -13.78095 -13.40832 -13.33026 -13.29196 -13.26413 -13.23659 -12.80731 -12.75423 -12.71645 -12.59433 -12.50286 -12.21256 -12.18269 -12.07188 -11.79338 -11.63553 -11.50595 -11.07029 -10.60732 -10.42338 -10.03482 -9.95301 -9.39563 -8.19676 -6.30424 -0.83017 -0.20867 0.31227 1.32555 1.37982 1.44437 1.78660 1.83453 2.32049 2.44635 2.55903 2.78754 3.09820 3.11579 3.58124 3.72572 3.82501 3.95314 4.03283 4.12283 4.16203 4.29809 4.35853 4.41002 4.45307 4.46652 4.61123 4.69310 4.82300 4.89387 4.93416 4.96954 4.99772 5.05929 5.09714 5.10577 5.16406 5.26148 5.28528 5.37893 5.40518 5.49421 5.62960 5.67079 5.88003 5.91627 6.13637 6.75419 6.85677 7.32396 7.51876 8.87216 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.013479 B = 0.003263 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.841639 B = 8578.048542 C = 8857.377480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.121 3.879 3 C -0.156 4.156 4 N -0.596 5.596 5 C 0.266 3.734 6 C -0.528 4.528 7 H 0.049 0.951 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.954 3.046 11 H -0.258 1.258 12 H -0.276 1.276 13 H -0.286 1.286 14 C 0.473 3.527 15 O -0.593 6.593 16 C 0.111 3.889 17 N -0.982 5.982 18 C 0.088 3.912 19 S 2.685 3.315 20 O -0.992 6.992 21 O -0.989 6.989 22 C -0.676 4.676 23 C -0.038 4.038 24 C -0.139 4.139 25 C -0.058 4.058 26 C -0.139 4.139 27 C -0.039 4.039 28 H 0.035 0.965 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.031 0.969 36 H -0.010 1.010 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.160 0.840 40 H 0.035 0.965 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.143 0.857 44 H 0.163 0.837 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -10.189 -28.652 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.018 3.982 3 C -0.214 4.214 4 N -0.328 5.328 5 C 0.144 3.856 6 C -0.567 4.567 7 H 0.067 0.933 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.779 3.221 11 H -0.182 1.182 12 H -0.201 1.201 13 H -0.212 1.212 14 C 0.260 3.740 15 O -0.474 6.474 16 C -0.018 4.018 17 N -0.819 5.819 18 C -0.056 4.056 19 S 2.781 3.219 20 O -0.982 6.982 21 O -0.979 6.979 22 C -0.767 4.767 23 C -0.057 4.057 24 C -0.158 4.158 25 C -0.076 4.076 26 C -0.158 4.158 27 C -0.059 4.059 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.059 0.941 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.008 0.992 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.178 0.822 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.160 0.840 44 H 0.180 0.820 45 H 0.185 0.815 46 H 0.179 0.821 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.141 -10.309 -27.215 29.395 hybrid contribution 0.536 0.687 1.074 1.383 sum 4.677 -9.622 -26.140 28.245 Atomic orbital electron populations 1.22119 0.93768 1.02576 1.02831 1.21528 0.95630 0.94013 0.86986 1.22118 1.00545 0.96124 1.02581 1.48407 1.49230 1.26701 1.08491 1.18608 0.95145 0.92392 0.79416 1.21684 1.08964 1.23649 1.02352 0.93251 1.25742 0.97717 0.99109 0.96514 1.70025 1.31192 1.44635 1.11057 0.85673 0.78913 0.79463 0.78030 1.18189 1.20134 1.21232 1.21998 0.78297 0.80642 0.93079 1.90641 1.54878 1.59881 1.42002 1.21501 0.99525 0.87755 0.93041 1.56905 1.23444 1.13560 1.88028 1.21748 1.01123 0.80887 1.01879 1.01781 0.72495 0.72353 0.75234 1.93561 1.83397 1.38475 1.82749 1.93498 1.78181 1.53205 1.73009 1.30477 1.20503 1.01785 1.23946 1.21195 0.92518 0.94979 0.97024 1.21707 1.00055 1.01177 0.92828 1.22006 0.92331 0.91864 1.01409 1.21698 0.99656 0.99763 0.94639 1.21188 0.93212 0.96955 0.94536 0.94599 0.88195 0.91898 0.86018 0.94137 0.88704 0.93966 0.95162 0.99216 0.92616 0.85699 0.82232 0.94639 0.88937 0.87129 0.83955 0.81971 0.81513 0.82143 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.17 71.98 0.66 -3.24 16 2 C 0.12 3.53 3.17 45.00 0.14 3.67 16 3 C -0.16 -4.86 8.47 71.98 0.61 -4.25 16 4 N -0.60 -25.38 2.39 -802.13 -1.91 -27.29 16 5 C 0.27 14.63 4.59 85.63 0.39 15.02 16 6 C -0.53 -31.59 7.83 25.60 0.20 -31.39 16 7 H 0.05 2.99 7.63 -2.91 -0.02 2.97 16 8 C 0.01 0.46 5.46 84.66 0.46 0.92 16 9 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 10 Si 0.95 47.61 29.54 68.60 2.03 49.64 16 11 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 14 C 0.47 20.22 7.74 87.66 0.68 20.90 16 15 O -0.59 -32.55 16.00 -3.04 -0.05 -32.60 16 16 C 0.11 3.00 4.16 85.64 0.36 3.36 16 17 N -0.98 -27.81 2.68 -543.21 -1.45 -29.27 16 18 C 0.09 1.99 10.32 127.77 1.32 3.31 16 19 S 2.69 87.37 5.60 -56.49 -0.32 87.05 16 20 O -0.99 -40.69 16.25 -128.00 -2.08 -42.78 16 21 O -0.99 -37.11 16.35 -128.00 -2.09 -39.20 16 22 C -0.68 -15.28 5.97 22.27 0.13 -15.14 16 23 C -0.04 -0.68 9.52 22.27 0.21 -0.47 16 24 C -0.14 -1.62 10.05 22.27 0.22 -1.39 16 25 C -0.06 -0.55 10.05 22.27 0.22 -0.33 16 26 C -0.14 -1.72 10.05 22.27 0.22 -1.50 16 27 C -0.04 -0.75 9.52 22.27 0.21 -0.54 16 28 H 0.03 1.14 6.66 -2.39 -0.02 1.13 16 29 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.12 2.36 5.77 -2.39 -0.01 2.34 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 1.65 6.92 -2.38 -0.02 1.63 16 35 H 0.03 1.67 6.43 -2.38 -0.02 1.66 16 36 H -0.01 -0.66 7.42 -2.39 -0.02 -0.68 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 38 H 0.13 2.87 7.25 -2.39 -0.02 2.86 16 39 H 0.16 2.55 7.61 -2.39 -0.02 2.53 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.62 7.79 -2.39 -0.02 1.60 16 42 H 0.11 1.62 7.94 -2.38 -0.02 1.60 16 43 H 0.14 2.37 7.61 -2.91 -0.02 2.34 16 44 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 45 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 46 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.14 2.62 7.62 -2.91 -0.02 2.59 16 Total: -1.00 -95.27 399.32 1.42 -93.86 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.96 Total: 9.43 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 6.05 Total: -11.06 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -3.08 Total: -114.34 kcal Atomic # 8 Polarization: -110.36 SS G_CDS: -4.22 Total: -114.58 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Atomic # 16 Polarization: 87.37 SS G_CDS: -0.32 Total: 87.05 kcal Total: -95.27 1.42 -93.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065610035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.004 kcal (2) G-P(sol) polarization free energy of solvation -95.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds