Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46918 * 2 1 4 4 C 1.46504 * 119.99699 * 85.00293 * 3 2 1 5 5 C 1.50698 * 109.46925 * 80.79942 * 4 3 2 6 6 H 1.07996 * 120.00158 * 4.94597 * 5 4 3 7 7 C 1.37880 * 119.99534 * 184.94391 * 5 4 3 8 8 N 1.31515 * 120.00334 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99872 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47443 * 59.99967 * 9 7 5 11 11 H 1.48497 * 109.47140 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47316 * 300.00026 * 9 7 5 13 13 S 1.65595 * 120.00026 * 264.99645 * 3 2 1 14 14 O 1.42096 * 106.40382 * 28.91779 * 13 3 2 15 15 O 1.42107 * 106.40135 * 161.83193 * 13 3 2 16 16 C 1.76193 * 107.22125 * 275.37313 * 13 3 2 17 17 C 1.38267 * 119.97235 * 13.96731 * 16 13 3 18 18 C 1.38183 * 120.02538 * 179.76640 * 17 16 13 19 19 C 1.38485 * 119.97218 * 0.50812 * 18 17 16 20 20 F 1.35095 * 120.02528 * 179.76658 * 19 18 17 21 21 C 1.38445 * 119.94894 * 359.74559 * 19 18 17 22 22 C 1.38217 * 119.97293 * 0.02562 * 21 19 18 23 23 C 1.50700 * 119.98668 * 179.97438 * 22 21 19 24 24 F 1.39898 * 109.47024 * 6.27822 * 23 22 21 25 25 F 1.39896 * 109.47041 * 126.27984 * 23 22 21 26 26 F 1.39902 * 109.46953 * 246.27710 * 23 22 21 27 27 H 1.09007 * 109.47305 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46953 * 299.99904 * 1 2 3 29 29 H 1.09003 * 109.47166 * 59.99777 * 1 2 3 30 30 H 1.09000 * 109.46953 * 240.00096 * 2 1 3 31 31 H 1.08997 * 109.46811 * 120.00015 * 2 1 3 32 32 H 1.08997 * 109.46590 * 200.79783 * 4 3 2 33 33 H 1.09000 * 109.47066 * 320.79681 * 4 3 2 34 34 H 0.96995 * 119.99997 * 180.02562 * 8 7 5 35 35 H 1.07994 * 119.99129 * 0.02562 * 17 16 13 36 36 H 1.07996 * 120.01543 * 180.23556 * 18 17 16 37 37 H 1.07993 * 120.01372 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 3.4486 1.7101 1.9326 6 1 4.1370 1.0491 1.4272 7 6 3.7503 2.1896 3.1897 8 7 2.9122 2.9950 3.8050 9 14 5.3494 1.6951 4.0189 10 1 6.4964 2.1327 3.1833 11 1 5.4346 2.3397 5.3540 12 1 5.3883 0.2193 4.1790 13 16 2.4122 2.1202 -1.4286 14 8 1.5932 1.5265 -2.4266 15 8 2.4290 3.5168 -1.1667 16 6 4.0710 1.6656 -1.8110 17 6 4.6743 0.6213 -1.1350 18 6 5.9736 0.2607 -1.4374 19 6 6.6749 0.9527 -2.4106 20 9 7.9468 0.6042 -2.7038 21 6 6.0715 2.0017 -3.0831 22 6 4.7702 2.3574 -2.7822 23 6 4.1133 3.4995 -3.5137 24 9 4.9570 3.9448 -4.5369 25 9 2.9021 3.0660 -4.0635 26 9 3.8708 4.5479 -2.6197 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1669 3.1806 1.0671 33 1 1.3203 1.8660 1.9175 34 1 3.1247 3.3325 4.6891 35 1 4.1286 0.0843 -0.3733 36 1 6.4434 -0.5575 -0.9119 37 1 6.6173 2.5417 -3.8425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065626843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = -227.307366 kcal Electronic energy + Delta-G solvation = -31647.537848 eV Core-core repulsion = 26631.399063 eV Total energy + Delta-G solvation = -5016.138785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.065 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.23393 -49.32146 -47.81518 -47.52217 -39.36496 -36.78771 -36.30332 -35.42132 -32.81273 -32.41183 -31.21150 -30.06132 -26.82025 -26.38648 -23.61243 -23.33721 -22.57488 -21.76283 -19.35894 -18.65856 -18.51950 -18.44116 -17.32466 -17.05621 -16.52010 -16.48607 -16.31008 -16.00056 -15.73422 -14.84026 -14.66485 -14.51889 -14.36518 -14.09827 -14.01301 -13.75354 -13.71676 -13.70731 -13.64036 -13.30910 -13.02029 -12.83611 -12.71666 -12.13863 -12.07702 -11.81884 -11.59028 -11.53630 -11.40268 -11.15038 -11.05367 -10.84094 -10.59709 -10.48187 -10.11668 -9.94185 -9.61466 -9.37863 -8.58864 -8.27006 -6.20585 -4.28445 0.26397 0.67672 0.75866 2.40229 2.88984 3.18462 3.21646 3.25712 3.28288 3.41969 3.72064 3.90979 4.01364 4.27170 4.29127 4.43522 4.56552 4.83348 5.02712 5.14247 5.14991 5.23758 5.29713 5.52301 5.61586 5.68247 5.69106 5.76045 5.98901 6.20729 6.34877 6.53014 6.60671 7.20930 7.28526 7.48385 7.73185 8.01488 8.73129 9.37969 10.87526 Molecular weight = 355.07amu Principal moments of inertia in cm(-1) A = 0.009725 B = 0.005715 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.360103 B = 4898.585294 C = 6084.979618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 N -0.977 5.977 4 C 0.241 3.759 5 C -0.548 4.548 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 S 2.667 3.333 14 O -0.953 6.953 15 O -0.932 6.932 16 C -0.631 4.631 17 C 0.011 3.989 18 C -0.139 4.139 19 C 0.142 3.858 20 F -0.126 7.126 21 C -0.128 4.128 22 C -0.065 4.065 23 C 0.480 3.520 24 F -0.171 7.171 25 F -0.165 7.165 26 F -0.136 7.136 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.267 0.733 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -5.947 -11.548 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.006 4.006 3 N -0.818 5.818 4 C 0.119 3.881 5 C -0.587 4.587 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.718 3.282 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 S 2.752 3.248 14 O -0.943 6.943 15 O -0.922 6.922 16 C -0.712 4.712 17 C -0.007 4.007 18 C -0.159 4.159 19 C 0.123 3.877 20 F -0.104 7.104 21 C -0.148 4.148 22 C -0.068 4.068 23 C 0.425 3.575 24 F -0.152 7.152 25 F -0.146 7.146 26 F -0.117 7.117 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.182 0.818 36 H 0.172 0.828 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.125 -5.281 -11.898 13.387 hybrid contribution 1.966 -0.447 0.583 2.099 sum 5.091 -5.727 -11.315 13.666 Atomic orbital electron populations 1.22198 0.96202 1.01738 1.02854 1.21195 0.94616 0.82309 1.02457 1.57484 1.77226 1.23587 1.23503 1.19368 0.97891 0.92546 0.78245 1.21459 1.04629 1.30639 1.02010 0.92098 1.24910 0.96884 0.94719 0.97015 1.69903 1.35888 1.31763 1.14712 0.86683 0.83807 0.78786 0.78959 1.20091 1.20995 1.20068 1.03111 0.73612 0.74648 0.73458 1.93597 1.63807 1.78706 1.58174 1.93679 1.85889 1.28121 1.84555 1.31427 1.28714 1.06061 1.05007 1.21001 0.93888 0.91801 0.94055 1.21522 0.95438 1.01406 0.97508 1.17610 0.79549 0.94808 0.95776 1.91556 1.35657 1.91034 1.92201 1.20916 0.94249 0.97881 1.01729 1.19239 0.95310 0.95221 0.97022 1.18603 0.77213 0.83553 0.78122 1.93172 1.70873 1.90347 1.60849 1.93322 1.45574 1.89450 1.86304 1.93463 1.93940 1.58083 1.66211 0.92060 0.91758 0.92226 0.91745 0.89347 0.92635 0.93309 0.92347 0.81794 0.82817 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.12 1.84 5.06 -4.04 -0.02 1.82 16 3 N -0.98 -18.60 1.99 -115.66 -0.23 -18.83 16 4 C 0.24 5.56 5.45 -5.19 -0.03 5.54 16 5 C -0.55 -13.34 9.34 -34.44 -0.32 -13.66 16 6 H 0.06 1.35 6.03 -52.49 -0.32 1.04 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 9 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 S 2.67 52.21 4.13 -107.50 -0.44 51.77 16 14 O -0.95 -18.82 15.76 -57.17 -0.90 -19.72 16 15 O -0.93 -20.95 13.24 -57.17 -0.76 -21.71 16 16 C -0.63 -10.86 5.79 -39.57 -0.23 -11.09 16 17 C 0.01 0.16 8.96 -39.59 -0.35 -0.19 16 18 C -0.14 -1.77 10.03 -39.51 -0.40 -2.16 16 19 C 0.14 1.82 7.30 -39.41 -0.29 1.54 16 20 F -0.13 -1.52 17.27 2.25 0.04 -1.48 16 21 C -0.13 -1.72 9.41 -39.51 -0.37 -2.09 16 22 C -0.07 -1.05 5.38 -104.63 -0.56 -1.61 16 23 C 0.48 7.99 2.80 36.01 0.10 8.09 16 24 F -0.17 -2.40 16.00 2.25 0.04 -2.36 16 25 F -0.17 -2.89 14.78 2.25 0.03 -2.85 16 26 F -0.14 -2.57 14.35 2.25 0.03 -2.53 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 29 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 30 H 0.06 0.84 7.74 -51.93 -0.40 0.43 16 31 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 32 H 0.06 1.43 6.79 -51.93 -0.35 1.07 16 33 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.16 2.26 5.36 -52.49 -0.28 1.98 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.16 1.68 7.18 -52.49 -0.38 1.31 16 LS Contribution 336.81 15.07 5.08 5.08 Total: -1.00 -29.38 336.81 -6.98 -36.36 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.39 Total: -0.69 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.19 Total: -14.22 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.51 Total: -42.35 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.66 Total: -41.43 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 0.14 Total: -9.22 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 52.21 SS G_CDS: -0.44 Total: 51.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.38 -6.98 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065626843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.952 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds