Wall clock time and date at job start Tue Mar 31 2020 05:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31697 * 1 3 3 Si 1.86804 * 120.00127 * 2 1 4 4 H 1.48497 * 109.47187 * 269.99865 * 3 2 1 5 5 H 1.48506 * 109.46823 * 30.00239 * 3 2 1 6 6 H 1.48500 * 109.46911 * 149.99522 * 3 2 1 7 7 C 1.38586 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99827 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99845 * 180.02562 * 7 2 1 10 10 C 1.76200 * 99.99709 * 180.02562 * 9 7 2 11 11 N 1.30295 * 126.10141 * 359.97438 * 10 9 7 12 12 N 1.26103 * 117.69346 * 179.71124 * 11 10 9 13 13 C 1.30169 * 117.73915 * 0.55412 * 12 11 10 14 14 N 1.39025 * 126.08263 * 179.76335 * 13 12 11 15 15 C 1.34771 * 120.00409 * 359.68388 * 14 13 12 16 16 O 1.21289 * 119.99986 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00241 * 180.02562 * 15 14 13 18 18 S 1.81398 * 109.47259 * 180.02562 * 17 15 14 19 19 C 1.76199 * 102.99948 * 180.02562 * 18 17 15 20 20 C 1.39199 * 119.70970 * 180.02562 * 19 18 17 21 21 C 1.38274 * 119.09329 * 179.97438 * 20 19 18 22 22 C 1.38909 * 118.51181 * 359.97438 * 21 20 19 23 23 C 1.38031 * 119.33836 * 0.25276 * 22 21 20 24 24 N 1.31960 * 120.86239 * 359.45546 * 23 22 21 25 25 S 1.76472 * 107.82970 * 359.49668 * 13 12 11 26 26 H 0.96993 * 119.99987 * 0.02562 * 1 2 3 27 27 H 0.97008 * 119.99982 * 179.69350 * 14 13 12 28 28 H 1.08999 * 109.46818 * 60.00235 * 17 15 14 29 29 H 1.08998 * 109.47338 * 300.00693 * 17 15 14 30 30 H 1.08006 * 120.45596 * 359.97106 * 20 19 18 31 31 H 1.08004 * 120.73928 * 180.02562 * 21 20 19 32 32 H 1.08002 * 120.32660 * 179.97438 * 22 21 20 33 33 H 1.08000 * 119.56637 * 179.72239 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3170 0.0000 0.0000 3 14 2.2510 1.6178 0.0000 4 1 2.4986 2.0464 -1.4000 5 1 1.4484 2.6527 0.7001 6 1 3.5485 1.4401 0.7001 7 6 2.0099 -1.2002 0.0005 8 1 1.4699 -2.1355 0.0005 9 16 3.7720 -1.2001 0.0012 10 6 4.0779 -2.9354 0.0009 11 7 3.1744 -3.8742 0.0009 12 7 3.5726 -5.0707 -0.0050 13 6 4.8571 -5.2818 0.0007 14 7 5.4828 -6.5233 0.0004 15 6 4.7439 -7.6504 0.0004 16 8 3.5329 -7.5817 0.0000 17 6 5.4222 -8.9961 0.0007 18 16 4.1672 -10.3059 -0.0003 19 6 5.1326 -11.7799 0.0010 20 6 4.4992 -13.0194 0.0001 21 6 5.2692 -14.1679 0.0006 22 6 6.6523 -14.0389 0.0014 23 6 7.2140 -12.7781 0.0070 24 7 6.4547 -11.6988 0.0009 25 16 5.6627 -3.7118 0.0009 26 1 -0.4850 0.8400 -0.0004 27 1 6.4513 -6.5783 0.0005 28 1 6.0443 -9.0892 0.8909 29 1 6.0449 -9.0894 -0.8890 30 1 3.4210 -13.0833 -0.0009 31 1 4.8056 -15.1434 -0.0005 32 1 7.2819 -14.9165 0.0022 33 1 8.2889 -12.6735 0.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067317245.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:08 Heat of formation + Delta-G solvation = 76.327623 kcal Electronic energy + Delta-G solvation = -21477.815409 eV Core-core repulsion = 17884.011236 eV Total energy + Delta-G solvation = -3593.804172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 354.002 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55711 -40.29532 -39.35906 -35.11455 -33.01212 -32.81192 -31.67729 -31.04934 -29.38380 -26.00719 -25.62555 -24.14712 -23.94750 -22.49838 -19.71537 -19.56653 -18.61064 -17.77232 -17.38308 -16.76409 -16.69478 -16.44383 -16.10106 -15.41496 -15.29014 -14.92626 -14.60393 -14.46898 -14.22550 -13.88951 -13.37793 -13.26184 -13.11992 -12.84098 -12.28297 -11.93889 -11.49680 -11.35650 -11.20714 -10.80643 -10.50842 -10.49356 -10.27272 -10.15628 -10.02265 -9.77019 -9.70817 -9.65359 -9.20333 -9.05992 -8.68982 -7.87900 -7.21786 -6.58966 -4.36364 0.55654 0.78616 0.80328 0.88644 1.13093 1.65642 1.81810 2.32361 2.38459 2.93250 3.03977 3.09576 3.19104 3.26805 3.39768 3.93808 4.06135 4.22015 4.22817 4.39542 4.64262 4.66563 4.67253 4.80781 4.82792 4.94865 5.24637 5.37497 5.52695 5.72178 5.72385 6.13268 6.21105 6.96213 7.30049 7.66132 7.85041 8.49497 8.77072 9.39567 10.48903 Molecular weight = 354.00amu Principal moments of inertia in cm(-1) A = 0.035816 B = 0.001797 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.578763 B =15578.811839 C =16345.243779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.101 3.899 3 Si 0.844 3.156 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.237 1.237 7 C -0.531 4.531 8 H 0.126 0.874 9 S 0.123 5.877 10 C 0.019 3.981 11 N -0.261 5.261 12 N -0.231 5.231 13 C 0.193 3.807 14 N -0.618 5.618 15 C 0.520 3.480 16 O -0.457 6.457 17 C -0.134 4.134 18 S 0.020 5.980 19 C 0.104 3.896 20 C -0.150 4.150 21 C -0.057 4.057 22 C -0.184 4.184 23 C 0.114 3.886 24 N -0.496 5.496 25 S 0.034 5.966 26 H 0.278 0.722 27 H 0.421 0.579 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.294 -23.086 0.085 29.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.111 4.111 3 Si 0.667 3.333 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.162 1.162 7 C -0.681 4.681 8 H 0.144 0.856 9 S 0.360 5.640 10 C -0.365 4.365 11 N -0.106 5.106 12 N -0.074 5.074 13 C -0.184 4.184 14 N -0.271 5.271 15 C 0.301 3.699 16 O -0.324 6.324 17 C -0.286 4.286 18 S 0.261 5.739 19 C -0.145 4.145 20 C -0.177 4.177 21 C -0.085 4.085 22 C -0.207 4.207 23 C -0.046 4.046 24 N -0.209 5.209 25 S 0.268 5.732 26 H 0.089 0.911 27 H 0.258 0.742 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 16.786 -20.927 0.077 26.827 hybrid contribution 1.071 -1.346 -0.009 1.720 sum 17.857 -22.273 0.067 28.547 Atomic orbital electron populations 1.69940 1.05789 1.28391 1.43800 1.24784 0.94729 0.98657 0.92976 0.86989 0.81749 0.84027 0.80502 1.18343 1.18536 1.16159 1.22820 0.86943 0.99906 1.58443 0.85636 1.82880 1.12162 0.88036 1.80897 1.31618 0.90413 1.07692 1.06809 1.71694 1.26187 0.92102 1.20580 1.71316 1.08619 1.13033 1.14396 1.26329 0.91669 0.89383 1.11017 1.42357 1.10130 1.01156 1.73446 1.19909 0.87919 0.84230 0.77880 1.90935 1.12674 1.85652 1.43155 1.23507 1.02444 0.93415 1.09226 1.86502 1.05992 0.90915 1.90493 1.23586 0.93815 0.98289 0.98766 1.21653 1.01613 0.91345 1.03040 1.21529 0.93840 0.98681 0.94403 1.22089 0.95812 0.99173 1.03658 1.22734 1.00010 0.87943 0.93883 1.68126 1.04252 1.33483 1.15076 1.85134 1.11135 0.99401 1.77522 0.91094 0.74204 0.85691 0.85694 0.84115 0.84279 0.84601 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.18 13.97 55.48 0.78 -23.41 16 2 C 0.10 2.75 5.50 -17.48 -0.10 2.65 16 3 Si 0.84 18.70 27.73 -169.99 -4.71 13.98 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.24 -4.93 6.73 56.52 0.38 -4.55 16 7 C -0.53 -14.75 9.90 30.86 0.31 -14.44 16 8 H 0.13 3.93 7.14 -52.49 -0.37 3.56 16 9 S 0.12 2.81 19.86 -107.50 -2.13 0.68 16 10 C 0.02 0.42 7.83 52.11 0.41 0.82 16 11 N -0.26 -6.54 10.37 31.31 0.32 -6.22 16 12 N -0.23 -5.34 9.79 31.05 0.30 -5.04 16 13 C 0.19 3.47 8.41 -86.88 -0.73 2.74 16 14 N -0.62 -8.02 5.40 -11.62 -0.06 -8.09 16 15 C 0.52 7.28 7.81 -10.99 -0.09 7.20 16 16 O -0.46 -8.82 14.57 5.55 0.08 -8.74 16 17 C -0.13 -1.31 5.68 36.01 0.20 -1.10 16 18 S 0.02 0.23 21.05 -107.50 -2.26 -2.04 16 19 C 0.10 1.02 7.00 -16.92 -0.12 0.90 16 20 C -0.15 -1.20 9.84 -39.21 -0.39 -1.59 16 21 C -0.06 -0.34 10.17 -39.32 -0.40 -0.74 16 22 C -0.18 -1.02 10.11 -39.41 -0.40 -1.42 16 23 C 0.11 0.78 11.17 -17.57 -0.20 0.58 16 24 N -0.50 -4.62 9.43 -12.11 -0.11 -4.73 16 25 S 0.03 0.56 23.53 -107.50 -2.53 -1.97 16 26 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.42 3.36 8.82 -40.82 -0.36 3.00 16 28 H 0.12 0.98 8.14 -51.92 -0.42 0.55 16 29 H 0.12 0.98 8.14 -51.92 -0.42 0.55 16 30 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 31 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 32 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 33 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -35.37 342.86 -9.09 -44.46 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -2.43 Total: 0.31 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.49 Total: -4.38 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 1.23 Total: -47.48 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.98 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -6.93 Total: -3.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.37 -9.09 -44.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067317245.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.785 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds