Wall clock time and date at job start Tue Mar 31 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00225 * 2 1 4 4 H 1.48498 * 109.47406 * 269.99757 * 3 2 1 5 5 H 1.48500 * 109.46886 * 29.99788 * 3 2 1 6 6 H 1.48499 * 109.47015 * 149.99401 * 3 2 1 7 7 C 1.37880 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99563 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00058 * 274.99959 * 10 9 7 12 12 C 1.53002 * 109.47422 * 275.00028 * 11 10 9 13 13 C 1.52991 * 117.49786 * 243.62305 * 12 11 10 14 14 C 1.52996 * 117.50000 * 174.99833 * 12 11 10 15 15 S 1.65600 * 120.00171 * 94.99553 * 10 9 7 16 16 O 1.42101 * 104.27882 * 153.92970 * 15 10 9 17 17 O 1.42102 * 104.27187 * 26.07345 * 15 10 9 18 18 C 1.81399 * 104.45301 * 270.00308 * 15 10 9 19 19 C 1.50692 * 109.47062 * 179.97438 * 18 15 10 20 20 C 1.38239 * 120.00125 * 269.72781 * 19 18 15 21 21 C 1.38238 * 120.00145 * 179.76888 * 20 19 18 22 22 C 1.38240 * 119.99789 * 0.48516 * 21 20 19 23 23 N 1.48014 * 119.99931 * 179.77016 * 22 21 20 24 24 O 1.21803 * 120.00263 * 180.02562 * 23 22 21 25 25 O 1.21799 * 120.00147 * 0.02562 * 23 22 21 26 26 C 1.38235 * 120.00054 * 359.78730 * 22 21 20 27 27 C 1.38235 * 120.00092 * 90.00194 * 19 18 15 28 28 H 0.97005 * 119.99761 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47337 * 59.99705 * 9 7 2 30 30 H 1.08997 * 109.47329 * 299.99090 * 9 7 2 31 31 H 1.09004 * 109.47017 * 35.00113 * 11 10 9 32 32 H 1.09000 * 109.47101 * 154.99545 * 11 10 9 33 33 H 1.09005 * 115.54238 * 29.32660 * 12 11 10 34 34 H 1.09004 * 117.50494 * 359.97438 * 13 12 11 35 35 H 1.09008 * 117.50118 * 145.01729 * 13 12 11 36 36 H 1.09004 * 117.49557 * 214.97854 * 14 12 11 37 37 H 1.08995 * 117.49939 * 359.97438 * 14 12 11 38 38 H 1.09001 * 109.46838 * 300.00058 * 18 15 10 39 39 H 1.08998 * 109.46934 * 59.99858 * 18 15 10 40 40 H 1.07997 * 119.99679 * 0.02562 * 20 19 18 41 41 H 1.07992 * 120.00295 * 180.24958 * 21 20 19 42 42 H 1.07993 * 119.99959 * 179.97438 * 26 22 21 43 43 H 1.07993 * 119.99994 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7629 -4.0976 -1.2634 12 6 1.8032 -5.1104 -1.8913 13 6 2.2995 -6.5487 -2.0513 14 6 2.1535 -5.6486 -3.2799 15 16 2.6460 -4.3232 1.4292 16 8 3.0186 -5.6447 1.0627 17 8 1.5444 -4.0861 2.2949 18 6 4.0973 -3.3803 1.9728 19 6 4.5984 -3.9387 3.2797 20 6 4.1190 -3.4365 4.4751 21 6 4.5752 -3.9520 5.6739 22 6 5.5181 -4.9629 5.6774 23 7 6.0103 -5.5114 6.9610 24 8 6.8415 -6.4017 6.9642 25 8 5.5842 -5.0724 8.0142 26 6 6.0017 -5.4612 4.4821 27 6 5.5416 -4.9492 3.2832 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.9023 -3.2583 -1.9448 32 1 3.7240 -4.5762 -1.0751 33 1 0.7482 -4.9644 -1.6593 34 1 3.3100 -6.7735 -1.7097 35 1 1.5710 -7.3496 -1.9247 36 1 1.3288 -5.8573 -3.9615 37 1 3.0674 -5.2809 -3.7464 38 1 4.8822 -3.4556 1.2202 39 1 3.8215 -2.3344 2.1069 40 1 3.3850 -2.6443 4.4723 41 1 4.1977 -3.5625 6.6077 42 1 6.7387 -6.2506 4.4849 43 1 5.9197 -5.3383 2.3494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068914274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:32 Heat of formation + Delta-G solvation = -23.677826 kcal Electronic energy + Delta-G solvation = -29300.073666 eV Core-core repulsion = 25055.800628 eV Total energy + Delta-G solvation = -4244.273038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.113 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33473 -39.84103 -37.69245 -36.75566 -36.71782 -35.58654 -34.96852 -33.80871 -32.58235 -31.71684 -29.03725 -27.99588 -25.67590 -25.39636 -23.50568 -22.72726 -22.12210 -21.93765 -20.37532 -19.55797 -18.82570 -18.49042 -17.68904 -17.35311 -16.86694 -16.39300 -16.18831 -15.72294 -15.58417 -15.03751 -14.93023 -14.61207 -14.20835 -14.15635 -13.68857 -13.52081 -12.82767 -12.75145 -12.59428 -12.51628 -12.01028 -11.85304 -11.73968 -11.63851 -11.62043 -11.46791 -11.37055 -11.30065 -11.29299 -11.27551 -11.16899 -10.95709 -10.67912 -10.28353 -10.24147 -9.91881 -9.70202 -9.62145 -9.46633 -8.65701 -8.23155 -6.27370 -4.36615 -0.45562 0.53209 0.65759 1.18437 1.21855 2.96957 3.04031 3.12830 3.21131 3.21800 3.87434 4.05380 4.06530 4.20691 4.21357 4.28856 4.33414 4.62128 4.66508 4.97214 4.98662 5.04505 5.09463 5.11968 5.22690 5.35176 5.38269 5.46453 5.48550 5.63069 5.71214 5.81695 5.85406 5.97692 6.02740 6.10964 6.25917 6.30495 6.38592 6.56961 7.17015 7.23935 7.45286 7.48113 7.67541 7.95568 8.67813 9.30996 10.80225 Molecular weight = 354.11amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.003508 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.578416 B = 7978.882743 C =10178.400180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.241 3.759 10 N -0.976 5.976 11 C 0.162 3.838 12 C -0.163 4.163 13 C -0.173 4.173 14 C -0.182 4.182 15 S 2.609 3.391 16 O -0.959 6.959 17 O -0.944 6.944 18 C -0.613 4.613 19 C -0.024 4.024 20 C -0.106 4.106 21 C -0.049 4.049 22 C -0.049 4.049 23 N 0.031 4.969 24 O -0.163 6.163 25 O -0.161 6.161 26 C -0.051 4.051 27 C -0.111 4.111 28 H 0.267 0.733 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.144 0.856 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.814 -8.257 1.529 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.593 4.593 8 H 0.080 0.920 9 C 0.120 3.880 10 N -0.814 5.814 11 C 0.036 3.964 12 C -0.184 4.184 13 C -0.210 4.210 14 C -0.219 4.219 15 S 2.698 3.302 16 O -0.949 6.949 17 O -0.934 6.934 18 C -0.736 4.736 19 C -0.026 4.026 20 C -0.126 4.126 21 C -0.068 4.068 22 C -0.133 4.133 23 N 0.550 4.450 24 O -0.378 6.378 25 O -0.377 6.377 26 C -0.071 4.071 27 C -0.130 4.130 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.162 0.838 39 H 0.180 0.820 40 H 0.178 0.822 41 H 0.177 0.823 42 H 0.175 0.825 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.983 -8.555 1.323 12.475 hybrid contribution 1.030 1.557 0.091 1.869 sum 10.013 -6.998 1.414 12.298 Atomic orbital electron populations 1.69924 1.06042 1.27415 1.48692 1.24950 0.94827 0.99237 0.94618 0.86590 0.79743 0.83274 0.78362 1.20425 1.20935 1.19862 1.21541 0.93445 0.90909 1.53374 0.92033 1.19306 0.87357 0.81329 1.00055 1.57412 1.56488 1.49272 1.18208 1.20668 0.93701 0.96024 0.86026 1.22808 1.01308 0.95363 0.98871 1.22973 1.02673 0.93732 1.01607 1.22923 1.03074 1.04899 0.91034 1.05125 0.75823 0.74685 0.74519 1.93558 1.85046 1.33916 1.82353 1.93589 1.47069 1.86001 1.66722 1.30166 1.23400 1.17687 1.02307 1.19657 0.94773 0.94207 0.93973 1.21393 1.00362 1.00792 0.90033 1.21098 0.92553 0.92342 1.00833 1.21187 1.05061 1.03321 0.83685 1.43606 0.99133 0.99432 1.02850 1.94530 1.26554 1.22531 1.94229 1.94542 1.60545 1.62656 1.19926 1.21037 0.98066 0.98392 0.89558 1.21252 0.96884 0.96427 0.98481 0.92341 0.93822 0.92666 0.89426 0.91537 0.87390 0.88600 0.89376 0.89139 0.88950 0.83787 0.82035 0.82211 0.82323 0.82469 0.82748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.71 13.29 55.43 0.74 -22.98 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 19.20 29.54 -169.99 -5.02 14.18 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.55 -13.10 9.38 -34.44 -0.32 -13.42 16 8 H 0.06 1.35 7.81 -52.49 -0.41 0.94 16 9 C 0.24 5.41 5.41 -5.19 -0.03 5.38 16 10 N -0.98 -17.57 2.70 -115.66 -0.31 -17.88 16 11 C 0.16 2.48 5.54 -4.04 -0.02 2.46 16 12 C -0.16 -2.42 6.01 -90.63 -0.54 -2.97 16 13 C -0.17 -2.26 10.18 -26.74 -0.27 -2.53 16 14 C -0.18 -2.18 10.25 -26.73 -0.27 -2.46 16 15 S 2.61 43.91 5.35 -107.50 -0.58 43.34 16 16 O -0.96 -16.43 16.99 -57.54 -0.98 -17.41 16 17 O -0.94 -19.34 16.53 -57.54 -0.95 -20.29 16 18 C -0.61 -7.86 6.31 36.00 0.23 -7.64 16 19 C -0.02 -0.29 5.14 -104.63 -0.54 -0.83 16 20 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 21 C -0.05 -0.55 9.56 -39.58 -0.38 -0.93 16 22 C -0.05 -0.59 6.85 -79.95 -0.55 -1.14 16 23 N 0.03 0.41 4.45 33.96 0.15 0.57 16 24 O -0.16 -2.24 18.45 -29.46 -0.54 -2.79 16 25 O -0.16 -2.26 18.45 -29.46 -0.54 -2.80 16 26 C -0.05 -0.54 9.56 -39.58 -0.38 -0.92 16 27 C -0.11 -1.16 9.70 -39.58 -0.38 -1.54 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.06 1.38 6.82 -51.93 -0.35 1.02 16 31 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 32 H 0.07 0.85 7.34 -51.93 -0.38 0.47 16 33 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 34 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 35 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.14 1.43 8.09 -51.92 -0.42 1.01 16 39 H 0.16 2.13 8.08 -51.92 -0.42 1.71 16 40 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 41 H 0.16 1.49 7.61 -52.49 -0.40 1.09 16 42 H 0.16 1.31 7.61 -52.49 -0.40 0.91 16 43 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -30.35 390.71 -11.81 -42.16 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.71 Total: 4.57 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -3.94 Total: -26.56 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.58 Total: -40.29 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -3.02 Total: -43.29 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Atomic # 16 Polarization: 43.91 SS G_CDS: -0.58 Total: 43.34 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.35 -11.81 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068914274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.484 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds