Wall clock time and date at job start Tue Mar 31 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34692 * 117.00111 * 2 1 4 4 O 1.21441 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.47930 * 119.99806 * 180.02562 * 3 2 1 6 6 C 1.39602 * 120.00217 * 179.97438 * 5 3 2 7 7 C 1.37810 * 119.99583 * 180.02562 * 6 5 3 8 8 C 1.39561 * 120.00533 * 0.02936 * 7 6 5 9 9 C 1.48037 * 119.99841 * 179.97438 * 8 7 6 10 10 O 1.21527 * 119.99893 * 23.63694 * 9 8 7 11 11 N 1.34778 * 120.00352 * 203.64276 * 9 8 7 12 12 C 1.46507 * 119.99717 * 1.47662 * 11 9 8 13 13 C 1.50694 * 109.47147 * 259.03861 * 12 11 9 14 14 H 1.07997 * 120.00263 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00002 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99782 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00207 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47064 * 60.00437 * 17 15 13 19 19 H 1.48502 * 109.47043 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47205 * 300.00314 * 17 15 13 21 21 C 1.46501 * 120.00103 * 181.48558 * 11 9 8 22 22 C 1.50697 * 109.46649 * 269.99590 * 21 11 9 23 23 C 1.38663 * 120.42176 * 90.00421 * 22 21 11 24 24 C 1.38624 * 118.42604 * 179.97438 * 23 22 21 25 25 C 1.38231 * 119.16017 * 0.24724 * 24 23 22 26 26 N 1.31857 * 120.75860 * 359.50297 * 25 24 23 27 27 C 1.31883 * 121.72774 * 0.49031 * 26 25 24 28 28 C 1.39561 * 120.00674 * 0.22807 * 8 7 6 29 29 C 1.37814 * 120.00702 * 359.48984 * 28 8 7 30 30 H 1.08994 * 109.47369 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46832 * 300.00219 * 1 2 3 32 32 H 1.09003 * 109.47250 * 59.99779 * 1 2 3 33 33 H 1.08001 * 120.00238 * 0.02562 * 6 5 3 34 34 H 1.07992 * 120.00108 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46986 * 19.03961 * 12 11 9 36 36 H 1.09003 * 109.46701 * 139.04001 * 12 11 9 37 37 H 0.96997 * 119.99869 * 180.02562 * 16 15 13 38 38 H 1.08998 * 109.46801 * 149.99909 * 21 11 9 39 39 H 1.08993 * 109.47171 * 29.99838 * 21 11 9 40 40 H 1.08001 * 120.78774 * 359.95501 * 23 22 21 41 41 H 1.08002 * 120.42396 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.61981 * 179.74764 * 25 24 23 43 43 H 1.07997 * 119.61843 * 179.74977 * 27 26 25 44 44 H 1.08001 * 119.99416 * 179.74696 * 28 8 7 45 45 H 1.07997 * 120.00642 * 180.25054 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4021 2.2186 -0.0005 5 6 3.5408 1.2774 -0.0006 6 6 4.1747 2.5212 -0.0011 7 6 5.5509 2.5931 -0.0022 8 6 6.3109 1.4226 -0.0033 9 6 7.7892 1.5000 -0.0051 10 8 8.3461 2.4946 0.4165 11 7 8.5177 0.4677 -0.4742 12 6 7.8460 -0.7179 -1.0124 13 6 7.8562 -1.8139 0.0218 14 1 8.3166 -1.6443 0.9838 15 6 7.2769 -3.0330 -0.2599 16 7 6.7158 -3.2395 -1.4313 17 14 7.2903 -4.3919 1.0217 18 1 6.5788 -3.9298 2.2406 19 1 6.6082 -5.5931 0.4766 20 1 8.6937 -4.7328 1.3671 21 6 9.9810 0.5309 -0.4459 22 6 10.4823 1.1402 -1.7298 23 6 10.6594 2.5115 -1.8341 24 6 11.1231 3.0276 -3.0342 25 6 11.3867 2.1647 -4.0814 26 7 11.2112 0.8651 -3.9448 27 6 10.7720 0.3392 -2.8179 28 6 5.6774 0.1791 -0.0082 29 6 4.3012 0.1067 -0.0013 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.5866 3.4271 -0.0007 34 1 6.0413 3.5553 -0.0022 35 1 6.8159 -0.4679 -1.2666 36 1 8.3689 -1.0572 -1.9066 37 1 6.3080 -4.0969 -1.6293 38 1 10.3861 -0.4753 -0.3387 39 1 10.3019 1.1435 0.3966 40 1 10.4409 3.1621 -1.0001 41 1 11.2722 4.0909 -3.1510 42 1 11.7443 2.5593 -5.0210 43 1 10.6367 -0.7298 -2.7448 44 1 6.2657 -0.7266 -0.0133 45 1 3.8109 -0.8556 -0.0010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069381095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:13 Heat of formation + Delta-G solvation = -28.144192 kcal Electronic energy + Delta-G solvation = -30916.543595 eV Core-core repulsion = 26672.466024 eV Total energy + Delta-G solvation = -4244.077571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.57060 -40.16747 -39.50082 -37.72692 -36.34753 -35.63306 -33.44562 -32.33055 -31.69692 -31.08167 -30.50573 -27.86865 -27.81754 -26.36639 -24.28208 -23.45971 -22.97869 -22.41251 -21.79390 -20.84156 -19.19052 -17.82696 -17.06907 -17.01597 -16.89832 -16.55333 -16.31294 -15.91034 -15.83667 -15.18754 -14.76219 -14.52891 -14.32838 -14.21915 -13.80959 -13.62705 -13.46252 -13.31095 -13.11293 -13.05650 -12.77078 -12.52501 -12.29798 -12.13288 -11.99799 -11.81178 -11.52495 -11.24122 -11.13121 -10.98122 -10.82310 -10.53441 -10.43353 -10.05842 -9.88752 -9.64760 -9.32459 -9.26068 -8.89193 -8.79592 -8.76403 -8.39057 -7.98051 -6.43002 -4.54748 0.67213 1.27703 1.50654 1.70769 2.48856 2.71787 3.12573 3.19212 3.20965 3.37648 3.63395 4.11243 4.15383 4.21969 4.65510 4.78230 4.86941 4.99181 5.03838 5.11042 5.11311 5.13205 5.17841 5.24387 5.26477 5.31184 5.43261 5.59882 5.66066 5.74011 5.85390 6.01922 6.08647 6.11712 6.25932 6.33222 6.38707 6.46052 6.52162 6.58157 6.72229 6.84316 6.91743 7.00118 7.21697 7.30294 7.51086 7.73611 7.77623 8.07443 8.17320 8.53178 8.73496 9.14310 10.60825 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.008219 B = 0.003748 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.072829 B = 7468.737373 C = 9804.510628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.512 3.488 4 O -0.513 6.513 5 C -0.117 4.117 6 C -0.082 4.082 7 C -0.082 4.082 8 C -0.099 4.099 9 C 0.555 3.445 10 O -0.564 6.564 11 N -0.580 5.580 12 C 0.205 3.795 13 C -0.553 4.553 14 H 0.069 0.931 15 C 0.072 3.928 16 N -0.874 5.874 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.162 3.838 22 C -0.147 4.147 23 C -0.056 4.056 24 C -0.182 4.182 25 C 0.090 3.910 26 N -0.489 5.489 27 C 0.116 3.884 28 C -0.115 4.115 29 C -0.074 4.074 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.272 0.728 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.221 0.779 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 6.203 -0.122 6.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.358 3.642 4 O -0.403 6.403 5 C -0.118 4.118 6 C -0.100 4.100 7 C -0.101 4.101 8 C -0.102 4.102 9 C 0.344 3.656 10 O -0.445 6.445 11 N -0.309 5.309 12 C 0.086 3.914 13 C -0.590 4.590 14 H 0.087 0.913 15 C -0.134 4.134 16 N -0.510 5.510 17 Si 0.724 3.276 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.038 3.962 22 C -0.150 4.150 23 C -0.082 4.082 24 C -0.202 4.202 25 C -0.067 4.067 26 N -0.198 5.198 27 C -0.041 4.041 28 C -0.132 4.132 29 C -0.092 4.092 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.176 0.824 44 H 0.236 0.764 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.760 6.260 -0.749 6.546 hybrid contribution -0.615 -0.174 1.196 1.356 sum -2.376 6.086 0.447 6.549 Atomic orbital electron populations 1.23264 0.76300 1.03728 1.02405 1.86598 1.23283 1.32643 1.84140 1.21434 0.89365 0.81263 0.72174 1.90786 1.66955 1.36111 1.46451 1.19298 0.88462 0.95549 1.08499 1.20995 0.94156 0.96392 0.98496 1.21099 0.92660 0.98294 0.98050 1.20262 0.93587 0.94410 1.01975 1.18340 0.86802 0.82691 0.77773 1.90651 1.72749 1.31789 1.49321 1.48111 1.05204 1.18242 1.59295 1.20422 0.95044 0.81024 0.94899 1.21365 1.39266 0.97107 1.01308 0.91315 1.25010 0.94401 0.98329 0.95664 1.69918 1.35121 1.25093 1.20845 0.86540 0.78791 0.80835 0.81450 1.19676 1.20885 1.19825 1.20176 0.80855 1.01845 0.93320 1.21406 1.00335 0.94664 0.98617 1.21674 0.93733 0.95008 0.97809 1.22108 1.02332 1.01107 0.94637 1.22707 0.96418 0.89159 0.98410 1.67710 1.12665 1.14076 1.25332 1.22830 0.93046 1.00726 0.87517 1.24011 0.95540 1.01852 0.91774 1.21569 0.94183 0.97527 0.95942 0.87981 0.91971 0.91920 0.84724 0.84680 0.91441 0.94534 0.91809 0.88502 0.89655 0.84408 0.85251 0.83293 0.82401 0.76395 0.84229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.35 -5.01 9.81 -40.47 -0.40 -5.40 16 3 C 0.51 8.17 7.90 34.70 0.27 8.44 16 4 O -0.51 -8.82 16.12 -19.22 -0.31 -9.13 16 5 C -0.12 -1.92 5.88 -104.91 -0.62 -2.54 16 6 C -0.08 -1.29 9.58 -39.23 -0.38 -1.67 16 7 C -0.08 -1.36 9.57 -39.24 -0.38 -1.74 16 8 C -0.10 -1.86 5.62 -104.89 -0.59 -2.45 16 9 C 0.55 10.93 7.53 -12.24 -0.09 10.84 16 10 O -0.56 -11.56 15.73 5.34 0.08 -11.47 16 11 N -0.58 -11.12 2.46 -177.48 -0.44 -11.56 16 12 C 0.21 4.33 4.63 -5.19 -0.02 4.31 16 13 C -0.55 -12.43 7.28 -34.44 -0.25 -12.68 16 14 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 16 N -0.87 -21.23 13.29 55.43 0.74 -20.49 16 17 Si 0.90 18.42 29.54 -169.99 -5.02 13.40 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 C 0.16 2.71 5.52 -5.19 -0.03 2.68 16 22 C -0.15 -2.35 5.48 -104.49 -0.57 -2.92 16 23 C -0.06 -0.83 9.86 -39.28 -0.39 -1.22 16 24 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 25 C 0.09 1.22 11.18 -17.54 -0.20 1.02 16 26 N -0.49 -7.87 10.36 -13.25 -0.14 -8.00 16 27 C 0.12 1.88 10.86 -17.55 -0.19 1.69 16 28 C -0.12 -2.20 7.50 -39.24 -0.29 -2.49 16 29 C -0.07 -1.28 9.60 -39.23 -0.38 -1.66 16 30 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.13 1.90 7.64 -52.49 -0.40 1.49 16 34 H 0.14 2.07 7.82 -52.49 -0.41 1.66 16 35 H 0.07 1.50 4.19 -51.95 -0.22 1.28 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 38 H 0.10 1.56 7.99 -51.93 -0.41 1.14 16 39 H 0.09 1.40 7.39 -51.93 -0.38 1.01 16 40 H 0.14 2.04 7.62 -52.49 -0.40 1.65 16 41 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.15 1.54 8.06 -52.48 -0.42 1.11 16 43 H 0.16 2.49 8.06 -52.49 -0.42 2.07 16 44 H 0.22 4.62 2.57 -52.49 -0.13 4.49 16 45 H 0.14 2.31 7.60 -52.49 -0.40 1.91 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -27.39 388.27 -8.42 -35.80 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.27 Total: 11.11 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.52 Total: -0.10 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.16 Total: -40.05 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.62 Total: -26.01 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -27.39 -8.42 -35.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069381095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.659 kcal (2) G-P(sol) polarization free energy of solvation -27.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds