Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 119.99611 * 2 1 4 4 C 1.38207 * 119.99991 * 180.02562 * 3 2 1 5 5 C 1.38262 * 119.99704 * 359.80881 * 4 3 2 6 6 S 1.76201 * 120.00009 * 180.22982 * 5 4 3 7 7 O 1.42098 * 106.40322 * 125.96721 * 6 5 4 8 8 O 1.42100 * 106.40311 * 258.88982 * 6 5 4 9 9 N 1.65597 * 107.21821 * 12.42524 * 6 5 4 10 10 C 1.46965 * 120.59879 * 263.99329 * 9 6 5 11 11 C 1.53814 * 108.39948 * 124.75544 * 10 9 6 12 12 N 1.46966 * 108.57693 * 49.64125 * 11 10 9 13 13 C 1.36942 * 120.59382 * 124.62559 * 12 11 10 14 14 H 1.07996 * 119.99800 * 213.18541 * 13 12 11 15 15 C 1.38814 * 119.99911 * 33.18866 * 13 12 11 16 16 N 1.31613 * 120.00175 * 12.23222 * 15 13 12 17 17 Si 1.86795 * 119.99866 * 192.23073 * 15 13 12 18 18 H 1.48502 * 109.47223 * 60.00053 * 17 15 13 19 19 H 1.48495 * 109.47336 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47459 * 300.00073 * 17 15 13 21 21 C 1.46968 * 118.81409 * 304.64272 * 12 11 10 22 22 C 1.46972 * 120.59479 * 84.27003 * 9 6 5 23 23 C 1.38209 * 119.99929 * 0.45266 * 5 4 3 24 24 N 1.48024 * 119.99758 * 179.77982 * 23 5 4 25 25 O 1.21801 * 119.99664 * 172.17043 * 24 23 5 26 26 O 1.21797 * 120.00248 * 352.17865 * 24 23 5 27 27 C 1.38207 * 120.00083 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47116 * 269.97311 * 1 2 3 29 29 H 1.08994 * 109.47533 * 29.97931 * 1 2 3 30 30 H 1.09011 * 109.46928 * 149.97505 * 1 2 3 31 31 H 1.08002 * 119.99918 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.00215 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.60959 * 244.53744 * 10 9 6 34 34 H 1.08995 * 109.60801 * 5.05100 * 10 9 6 35 35 H 1.08999 * 109.74279 * 289.85290 * 11 10 9 36 36 H 1.08997 * 109.67435 * 169.38863 * 11 10 9 37 37 H 0.96995 * 120.00525 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.60528 * 295.48899 * 21 12 11 39 39 H 1.08992 * 109.74860 * 175.05537 * 21 12 11 40 40 H 1.09006 * 109.60344 * 354.95184 * 22 9 6 41 41 H 1.09002 * 109.61304 * 115.28545 * 22 9 6 42 42 H 1.07996 * 120.00274 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 -0.0005 5 6 4.2716 0.0001 0.0029 6 16 6.0336 0.0002 0.0084 7 8 6.4315 -0.7992 1.1137 8 8 6.4391 -0.2640 -1.3277 9 7 6.5227 1.5453 0.3485 10 6 6.8740 2.4743 -0.7347 11 6 6.0189 3.7438 -0.5819 12 7 6.1155 4.2086 0.8090 13 6 6.5208 5.4861 1.0904 14 1 7.0897 5.6871 1.9860 15 6 6.2003 6.5225 0.2244 16 7 5.3141 6.3325 -0.7300 17 14 7.0267 8.1870 0.4136 18 1 8.4953 8.0310 0.2583 19 1 6.5153 9.1147 -0.6271 20 1 6.7271 8.7384 1.7594 21 6 5.7696 3.2779 1.8925 22 6 6.6192 2.0102 1.7394 23 6 3.5806 -1.1968 -0.0025 24 7 4.3208 -2.4787 -0.0038 25 8 3.7199 -3.5290 0.1352 26 8 5.5307 -2.4832 -0.1435 27 6 2.1981 -1.1969 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5143 31 1 1.6581 2.1327 -0.0004 32 1 4.1203 2.1328 -0.0010 33 1 7.9310 2.7317 -0.6675 34 1 6.6691 2.0072 -1.6980 35 1 4.9796 3.5187 -0.8210 36 1 6.3892 4.5186 -1.2531 37 1 5.0904 7.0566 -1.3354 38 1 4.7126 3.0196 1.8294 39 1 5.9759 3.7422 2.8568 40 1 6.2461 1.2365 2.4104 41 1 7.6590 2.2324 1.9796 42 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069416746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -7.326629 kcal Electronic energy + Delta-G solvation = -31183.418632 eV Core-core repulsion = 26874.428725 eV Total energy + Delta-G solvation = -4308.989908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.108 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.48029 -39.87676 -37.85208 -37.04446 -36.86726 -35.58293 -33.98449 -33.76461 -32.22567 -31.24397 -30.35261 -27.96636 -26.91815 -26.55282 -23.56540 -23.14955 -23.04233 -22.33690 -20.44087 -19.46661 -18.96878 -18.54179 -17.88303 -17.78111 -17.36230 -16.37958 -15.87570 -15.73730 -15.14308 -14.95171 -14.87874 -14.46655 -14.15604 -13.82674 -13.77785 -13.56665 -13.17431 -13.00992 -12.89175 -12.81322 -12.34564 -12.20819 -12.07652 -11.87634 -11.71723 -11.52296 -11.42175 -11.26696 -11.12984 -11.00326 -10.92213 -10.87701 -10.58077 -10.39209 -10.16148 -9.90436 -9.86352 -9.73326 -8.94155 -8.63734 -6.79597 -5.98484 -3.48886 -0.57598 0.33818 0.40574 1.05227 1.09171 2.76662 2.98375 3.27607 3.33785 3.35271 3.72530 3.96960 4.13140 4.33407 4.39404 4.45069 4.67428 4.73231 4.87619 4.99934 5.07294 5.14016 5.20679 5.22958 5.33772 5.41094 5.51562 5.61692 5.72463 5.78459 5.87750 5.92763 6.14106 6.16557 6.19224 6.29246 6.45040 6.61494 6.73798 7.04437 7.35418 7.36439 7.63034 8.26706 9.00146 9.60455 10.18753 11.09410 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.003799 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.425500 B = 7368.692593 C = 8568.081040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.042 4.042 3 C -0.083 4.083 4 C -0.021 4.021 5 C -0.629 4.629 6 S 2.693 3.307 7 O -0.938 6.938 8 O -0.940 6.940 9 N -0.988 5.988 10 C 0.085 3.915 11 C 0.156 3.844 12 N -0.586 5.586 13 C -0.260 4.260 14 H 0.066 0.934 15 C 0.010 3.990 16 N -0.904 5.904 17 Si 0.907 3.093 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.128 3.872 22 C 0.100 3.900 23 C 0.043 3.957 24 N 0.016 4.984 25 O -0.128 6.128 26 O -0.155 6.155 27 C -0.072 4.072 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.101 0.899 37 H 0.257 0.743 38 H 0.020 0.980 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 -10.413 1.228 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.043 4.043 3 C -0.102 4.102 4 C -0.040 4.040 5 C -0.710 4.710 6 S 2.776 3.224 7 O -0.928 6.928 8 O -0.930 6.930 9 N -0.830 5.830 10 C -0.041 4.041 11 C 0.029 3.971 12 N -0.309 5.309 13 C -0.389 4.389 14 H 0.083 0.917 15 C -0.189 4.189 16 N -0.547 5.547 17 Si 0.736 3.264 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.208 1.208 21 C 0.000 4.000 22 C -0.027 4.027 23 C -0.040 4.040 24 N 0.536 4.464 25 O -0.351 6.351 26 O -0.365 6.365 27 C -0.092 4.092 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.040 0.960 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.221 -10.348 0.938 13.892 hybrid contribution -0.207 0.860 0.096 0.890 sum -9.428 -9.488 1.033 13.416 Atomic orbital electron populations 1.20964 0.88661 1.04330 1.03790 1.20232 0.97515 0.91660 0.94880 1.21758 0.94375 0.98949 0.95079 1.21597 0.95219 0.96751 0.90416 1.31424 1.31721 0.96353 1.11513 1.02606 0.72897 0.72300 0.74561 1.93593 1.79290 1.65596 1.54318 1.93573 1.79249 1.83264 1.36875 1.57666 1.79942 1.31256 1.14104 1.22611 1.01849 0.92070 0.87533 1.21318 0.95181 0.92505 0.88116 1.43836 1.77795 1.09520 0.99740 1.19123 1.27990 0.82966 1.08833 0.91654 1.25178 0.96776 0.97854 0.99099 1.69924 1.32190 1.32544 1.20066 0.86319 0.79305 0.83389 0.77393 1.20801 1.21581 1.20795 1.21368 0.94888 0.89911 0.93803 1.22145 1.02708 0.98156 0.79656 1.20442 0.92644 0.82074 1.08862 1.43771 1.01356 1.02934 0.98303 1.94494 1.69863 1.19702 1.51017 1.94563 0.95842 1.92914 1.53207 1.20991 0.90576 1.00679 0.96961 0.89580 0.89928 0.90357 0.82785 0.80992 0.90622 0.89901 0.95954 0.88091 0.93314 0.96209 0.91070 0.90527 0.90439 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 36.01 0.36 -0.31 16 2 C -0.04 -0.39 5.88 -104.62 -0.62 -1.01 16 3 C -0.08 -0.89 9.70 -39.58 -0.38 -1.27 16 4 C -0.02 -0.29 9.46 -39.58 -0.37 -0.66 16 5 C -0.63 -9.88 5.83 -39.58 -0.23 -10.11 16 6 S 2.69 48.26 3.97 -107.50 -0.43 47.84 16 7 O -0.94 -18.45 14.63 -67.03 -0.98 -19.43 16 8 O -0.94 -18.76 15.89 -64.89 -1.03 -19.79 16 9 N -0.99 -16.74 2.26 -113.00 -0.25 -17.00 16 10 C 0.09 1.51 6.58 -3.36 -0.02 1.48 16 11 C 0.16 3.19 4.97 -3.36 -0.02 3.17 16 12 N -0.59 -12.73 2.95 -171.77 -0.51 -13.24 16 13 C -0.26 -6.36 9.55 -15.06 -0.14 -6.50 16 14 H 0.07 1.58 7.86 -52.49 -0.41 1.17 16 15 C 0.01 0.26 5.00 -17.43 -0.09 0.17 16 16 N -0.90 -23.50 11.25 55.49 0.62 -22.88 16 17 Si 0.91 20.03 29.57 -169.99 -5.03 15.01 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.13 2.29 6.36 -3.60 -0.02 2.26 16 22 C 0.10 1.61 6.52 -3.59 -0.02 1.59 16 23 C 0.04 0.65 6.81 -79.95 -0.54 0.11 16 24 N 0.02 0.28 4.45 33.96 0.15 0.43 16 25 O -0.13 -2.00 18.47 -29.46 -0.54 -2.55 16 26 O -0.16 -3.05 13.79 -39.48 -0.54 -3.59 16 27 C -0.07 -0.81 9.21 -39.59 -0.36 -1.18 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 30 H 0.08 0.34 8.09 -51.92 -0.42 -0.08 16 31 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.17 2.53 3.51 -52.49 -0.18 2.34 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.08 1.36 6.93 -51.93 -0.36 1.00 16 35 H 0.02 0.45 6.30 -51.93 -0.33 0.13 16 36 H 0.10 2.34 6.20 -51.93 -0.32 2.02 16 37 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 38 H 0.02 0.34 7.12 -51.93 -0.37 -0.03 16 39 H 0.07 1.23 7.94 -51.93 -0.41 0.81 16 40 H 0.08 1.10 7.26 -51.93 -0.38 0.72 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.16 1.37 7.63 -52.49 -0.40 0.97 16 LS Contribution 352.14 15.07 5.31 5.31 Total: -1.00 -31.59 352.14 -10.53 -42.12 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.83 Total: 0.02 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -2.47 Total: -12.25 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.01 Total: -52.69 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -3.10 Total: -45.36 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 16 Polarization: 48.26 SS G_CDS: -0.43 Total: 47.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.59 -10.53 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069416746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.798 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds