Wall clock time and date at job start Tue Mar 31 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37982 * 120.07128 * 2 1 4 4 C 1.38337 * 120.14484 * 179.97438 * 3 2 1 5 5 C 1.38388 * 120.29292 * 359.97438 * 4 3 2 6 6 N 1.48015 * 119.92713 * 180.02562 * 5 4 3 7 7 O 1.21800 * 120.00239 * 359.97438 * 6 5 4 8 8 O 1.21795 * 120.00109 * 180.02562 * 6 5 4 9 9 C 1.37932 * 120.14448 * 359.76563 * 5 4 3 10 10 C 1.39559 * 120.07703 * 179.97438 * 2 1 3 11 11 C 1.47843 * 120.14059 * 0.02562 * 10 2 1 12 12 O 1.21549 * 120.00167 * 301.04787 * 11 10 2 13 13 N 1.34773 * 119.99776 * 121.05392 * 11 10 2 14 14 C 1.46497 * 120.00224 * 4.58529 * 13 11 10 15 15 C 1.50700 * 109.47388 * 265.92652 * 14 13 11 16 16 H 1.07999 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00307 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99754 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00177 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47083 * 60.00065 * 19 17 15 21 21 H 1.48495 * 109.47189 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46858 * 299.99851 * 19 17 15 23 23 C 1.46500 * 120.00048 * 184.58973 * 13 11 10 24 24 C 1.50697 * 109.47310 * 269.99813 * 23 13 11 25 25 C 1.38230 * 119.61758 * 94.97611 * 24 23 13 26 26 C 1.38628 * 119.15936 * 179.79480 * 25 24 23 27 27 C 1.38682 * 118.41797 * 0.46679 * 26 25 24 28 28 C 1.38182 * 119.16265 * 359.51204 * 27 26 25 29 29 N 1.31851 * 119.61584 * 274.99580 * 24 23 13 30 30 H 1.09003 * 109.46641 * 264.81687 * 1 2 3 31 31 H 1.08993 * 109.47317 * 24.81761 * 1 2 3 32 32 H 1.08999 * 109.46940 * 144.82377 * 1 2 3 33 33 H 1.07997 * 119.93144 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.85421 * 180.02562 * 4 3 2 35 35 H 1.07996 * 120.07532 * 180.25535 * 9 5 4 36 36 H 1.09003 * 109.47054 * 25.92589 * 14 13 11 37 37 H 1.09006 * 109.47341 * 145.92518 * 14 13 11 38 38 H 0.97001 * 120.00099 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47164 * 149.99398 * 23 13 11 40 40 H 1.09011 * 109.47014 * 29.99794 * 23 13 11 41 41 H 1.07997 * 120.42372 * 359.97438 * 25 24 23 42 42 H 1.07998 * 120.78951 * 180.23231 * 26 25 24 43 43 H 1.08001 * 120.41682 * 179.78007 * 27 26 25 44 44 H 1.08001 * 119.61241 * 180.24851 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5817 1.1959 0.0005 5 6 4.2813 0.0019 0.0016 6 7 5.7614 0.0132 0.0027 7 8 6.3624 1.0726 0.0023 8 8 6.3785 -1.0369 0.0032 9 6 3.6023 -1.1988 0.0070 10 6 2.2064 -1.2077 0.0005 11 6 1.4720 -2.4908 0.0005 12 8 0.6986 -2.7485 0.9021 13 7 1.6603 -3.3749 -0.9991 14 6 2.6653 -3.1102 -2.0316 15 6 2.0103 -2.4348 -3.2088 16 1 0.9512 -2.2242 -3.1900 17 6 2.7631 -2.0857 -4.3099 18 7 4.0529 -2.3416 -4.3327 19 14 1.9513 -1.2478 -5.7689 20 1 1.3438 0.0337 -5.3286 21 1 2.9699 -0.9796 -6.8155 22 1 0.8945 -2.1322 -6.3225 23 6 0.8599 -4.6007 -1.0533 24 6 1.5637 -5.6944 -0.2922 25 6 1.2345 -5.9275 1.0300 26 6 1.8849 -6.9388 1.7199 27 6 2.8535 -7.6748 1.0540 28 6 3.1290 -7.3845 -0.2686 29 7 2.4868 -6.4177 -0.8950 30 1 -0.3633 -0.0928 1.0235 31 1 -0.3633 0.9327 -0.4313 32 1 -0.3633 -0.8400 -0.5920 33 1 1.6584 2.1294 -0.0004 34 1 4.1182 2.1333 0.0010 35 1 4.1494 -2.1299 0.0120 36 1 3.4410 -2.4609 -1.6256 37 1 3.1112 -4.0510 -2.3544 38 1 4.5824 -2.0964 -5.1075 39 1 0.7317 -4.9054 -2.0920 40 1 -0.1169 -4.4170 -0.6054 41 1 0.4780 -5.3313 1.5185 42 1 1.6457 -7.1461 2.7524 43 1 3.3828 -8.4677 1.5615 44 1 3.8790 -7.9557 -0.7954 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069445427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:10 Heat of formation + Delta-G solvation = 28.754366 kcal Electronic energy + Delta-G solvation = -31942.278550 eV Core-core repulsion = 27635.242375 eV Total energy + Delta-G solvation = -4307.036175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86163 -40.43100 -39.80001 -38.20331 -36.22689 -35.41586 -33.20262 -32.95418 -32.27881 -31.99621 -30.92771 -28.48337 -27.67728 -26.46945 -24.89291 -23.94699 -23.35567 -22.77719 -22.19749 -21.39825 -19.88640 -18.39793 -18.03037 -17.19706 -16.97779 -16.62919 -16.43332 -15.89364 -15.79429 -15.66821 -15.53283 -15.28160 -14.60016 -14.09856 -13.96360 -13.87321 -13.57391 -13.10357 -13.00689 -12.75699 -12.53331 -12.34145 -12.22032 -11.96733 -11.74010 -11.65327 -11.59398 -11.33017 -11.20927 -11.06023 -10.87387 -10.80872 -10.79642 -10.31430 -9.94566 -9.72514 -9.61861 -9.24678 -9.13846 -9.02243 -8.85626 -8.56177 -8.00043 -6.22503 -4.30417 0.13389 0.94945 1.23649 1.45179 1.60763 1.71692 2.89758 3.18761 3.24847 3.25778 3.34254 3.65001 4.11312 4.26127 4.47749 4.54851 4.66122 4.69562 4.89749 4.90408 4.97420 5.05705 5.11739 5.19794 5.28316 5.31244 5.52750 5.58926 5.67218 5.69939 5.74765 5.83369 5.88512 5.93598 6.04134 6.08451 6.27435 6.30826 6.32543 6.41371 6.53409 6.73560 6.85089 7.05837 7.32638 7.67677 7.94389 7.98455 8.02975 8.24382 8.50224 8.75464 9.35798 10.84330 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.007242 B = 0.004671 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3865.647709 B = 5992.462198 C = 7086.094184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.012 3.988 3 C -0.128 4.128 4 C -0.042 4.042 5 C -0.053 4.053 6 N 0.037 4.963 7 O -0.174 6.174 8 O -0.158 6.158 9 C -0.004 4.004 10 C -0.098 4.098 11 C 0.562 3.438 12 O -0.555 6.555 13 N -0.573 5.573 14 C 0.227 3.773 15 C -0.540 4.540 16 H 0.060 0.940 17 C 0.068 3.932 18 N -0.883 5.883 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.169 3.831 24 C 0.116 3.884 25 C -0.151 4.151 26 C -0.084 4.084 27 C -0.179 4.179 28 C 0.096 3.904 29 N -0.462 5.462 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.267 0.733 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 -0.815 10.613 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.011 3.989 3 C -0.146 4.146 4 C -0.061 4.061 5 C -0.136 4.136 6 N 0.555 4.445 7 O -0.387 6.387 8 O -0.375 6.375 9 C -0.023 4.023 10 C -0.102 4.102 11 C 0.349 3.651 12 O -0.435 6.435 13 N -0.302 5.302 14 C 0.108 3.892 15 C -0.579 4.579 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.200 1.200 23 C 0.045 3.955 24 C -0.023 4.023 25 C -0.171 4.171 26 C -0.110 4.110 27 C -0.199 4.199 28 C -0.062 4.062 29 N -0.172 5.172 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.340 -0.765 10.030 11.891 hybrid contribution 0.211 0.203 -0.203 0.356 sum -6.130 -0.562 9.828 11.596 Atomic orbital electron populations 1.20933 0.89417 1.03701 1.03562 1.20243 0.97326 0.91332 0.89997 1.20915 0.92380 0.98326 1.03015 1.21031 0.94600 0.96880 0.93630 1.20816 0.79239 0.96692 1.16891 1.43503 1.03563 1.00322 0.97115 1.94475 1.69805 1.20241 1.54165 1.94558 1.68380 1.21313 1.53229 1.20988 0.93498 0.97455 0.90394 1.19615 0.92081 0.94608 1.03916 1.17953 0.81876 0.83100 0.82183 1.90702 1.38390 1.78039 1.36397 1.48207 1.38585 1.17596 1.25778 1.19825 0.86102 0.98531 0.84757 1.21320 0.95454 1.40237 1.00850 0.92133 1.24922 0.94757 0.95551 0.98384 1.69913 1.05479 1.46027 1.30572 0.86612 0.79202 0.79964 0.82064 1.20189 1.21035 1.19953 1.20212 0.92919 0.81146 1.01225 1.21783 0.93446 0.95074 0.92011 1.22123 1.01525 0.98169 0.95311 1.21555 0.94951 0.94534 0.99939 1.22118 0.99573 1.01597 0.96578 1.22781 0.97373 0.94013 0.91997 1.67589 1.05839 1.04689 1.39044 0.89529 0.90754 0.90305 0.83435 0.83086 0.82786 0.94175 0.92949 0.92303 0.87944 0.89111 0.84371 0.85232 0.85197 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.13 36.00 0.33 -1.21 16 2 C 0.01 0.18 5.91 -104.22 -0.62 -0.43 16 3 C -0.13 -1.66 9.67 -39.64 -0.38 -2.04 16 4 C -0.04 -0.61 9.55 -39.49 -0.38 -0.99 16 5 C -0.05 -0.94 6.85 -80.01 -0.55 -1.49 16 6 N 0.04 0.70 4.45 33.93 0.15 0.85 16 7 O -0.17 -3.22 18.44 -29.46 -0.54 -3.76 16 8 O -0.16 -3.23 18.44 -29.46 -0.54 -3.77 16 9 C 0.00 -0.07 7.10 -39.19 -0.28 -0.35 16 10 C -0.10 -1.77 4.98 -104.97 -0.52 -2.30 16 11 C 0.56 10.67 5.97 -12.33 -0.07 10.60 16 12 O -0.55 -10.59 15.88 5.32 0.08 -10.50 16 13 N -0.57 -11.36 2.44 -177.55 -0.43 -11.80 16 14 C 0.23 5.30 4.98 -5.20 -0.03 5.27 16 15 C -0.54 -13.63 9.39 -34.44 -0.32 -13.96 16 16 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.88 -24.60 13.29 55.43 0.74 -23.86 16 19 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.17 2.97 5.70 -5.19 -0.03 2.94 16 24 C 0.12 1.95 6.36 -82.59 -0.53 1.43 16 25 C -0.15 -2.21 9.72 -39.44 -0.38 -2.59 16 26 C -0.08 -1.03 10.18 -39.27 -0.40 -1.43 16 27 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 28 C 0.10 1.36 11.18 -17.55 -0.20 1.16 16 29 N -0.46 -8.10 10.27 -9.47 -0.10 -8.19 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.75 8.05 -51.93 -0.42 0.34 16 32 H 0.08 1.16 7.25 -51.93 -0.38 0.78 16 33 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.15 1.82 7.60 -52.48 -0.40 1.42 16 35 H 0.15 3.00 6.81 -52.49 -0.36 2.64 16 36 H 0.04 0.99 4.20 -51.93 -0.22 0.77 16 37 H 0.05 1.35 8.10 -51.93 -0.42 0.93 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.10 1.86 8.07 -51.93 -0.42 1.44 16 40 H 0.09 1.44 7.39 -51.92 -0.38 1.06 16 41 H 0.14 1.95 7.82 -52.49 -0.41 1.54 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 44 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -30.80 388.10 -9.73 -40.52 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.06 Total: 5.53 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.85 Total: -6.24 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.36 Total: -43.00 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -1.00 Total: -18.04 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.80 -9.73 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069445427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.279 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds