Wall clock time and date at job start Tue Mar 31 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.53002 * 109.47417 * 120.00129 * 2 1 3 5 5 N 1.46500 * 109.47034 * 174.99916 * 4 2 1 6 6 S 1.65605 * 119.99696 * 165.27427 * 5 4 2 7 7 O 1.42096 * 106.40008 * 178.26882 * 6 5 4 8 8 O 1.42102 * 106.40165 * 311.18650 * 6 5 4 9 9 C 1.76199 * 107.21777 * 64.72673 * 6 5 4 10 10 C 1.38363 * 119.85167 * 269.73056 * 9 6 5 11 11 C 1.37956 * 120.13968 * 179.72754 * 10 9 6 12 12 C 1.39568 * 119.85748 * 0.54041 * 11 10 9 13 13 C 1.47850 * 120.15021 * 179.70981 * 12 11 10 14 14 O 1.21548 * 120.00521 * 148.12570 * 13 12 11 15 15 N 1.34778 * 119.99398 * 328.12542 * 13 12 11 16 16 C 1.46500 * 120.00149 * 4.30170 * 15 13 12 17 17 C 1.46504 * 119.99709 * 184.29461 * 15 13 12 18 18 C 1.50696 * 109.46779 * 90.00495 * 17 15 13 19 19 H 1.08001 * 120.00477 * 359.97438 * 18 17 15 20 20 C 1.37883 * 119.99750 * 180.02562 * 18 17 15 21 21 N 1.31513 * 119.99989 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47053 * 90.00084 * 22 20 18 24 24 H 1.48497 * 109.46963 * 209.99596 * 22 20 18 25 25 H 1.48495 * 109.47201 * 330.00379 * 22 20 18 26 26 C 1.39586 * 119.70988 * 359.73010 * 12 11 10 27 27 C 1.37955 * 119.84913 * 359.97438 * 26 12 11 28 28 H 1.09001 * 109.46810 * 299.99705 * 1 2 3 29 29 H 1.08993 * 109.47461 * 59.99831 * 1 2 3 30 30 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47249 * 240.00120 * 2 1 3 32 32 H 1.09002 * 109.47627 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47063 * 300.00126 * 3 2 1 34 34 H 1.09005 * 109.46939 * 59.99931 * 3 2 1 35 35 H 1.08996 * 109.46890 * 55.00185 * 4 2 1 36 36 H 1.09005 * 109.46934 * 295.00165 * 4 2 1 37 37 H 0.96996 * 120.00432 * 345.00677 * 5 4 2 38 38 H 1.07999 * 119.93077 * 359.97438 * 10 9 6 39 39 H 1.08005 * 120.06988 * 180.24396 * 11 10 9 40 40 H 1.08991 * 109.47507 * 94.48190 * 16 15 13 41 41 H 1.09003 * 109.46679 * 214.48794 * 16 15 13 42 42 H 1.08997 * 109.46950 * 334.47629 * 16 15 13 43 43 H 1.08995 * 109.46816 * 209.99909 * 17 15 13 44 44 H 1.08997 * 109.47389 * 330.00239 * 17 15 13 45 45 H 0.97001 * 119.99440 * 180.02562 * 21 20 18 46 46 H 1.08005 * 120.07202 * 179.97438 * 26 12 11 47 47 H 1.08003 * 119.92370 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 16 4.3570 -1.2243 2.5506 7 8 5.7222 -1.2845 2.1613 8 8 3.8809 -0.3768 3.5870 9 6 3.8941 -2.8647 2.9972 10 6 2.8326 -3.0698 3.8607 11 6 2.4616 -4.3518 4.2100 12 6 3.1666 -5.4427 3.6993 13 6 2.7785 -6.8192 4.0744 14 8 2.9309 -7.7303 3.2845 15 7 2.2557 -7.0636 5.2924 16 6 1.9843 -5.9537 6.2092 17 6 1.9587 -8.4393 5.6993 18 6 3.1663 -9.0346 6.3762 19 1 4.0653 -8.4473 6.4914 20 6 3.1238 -10.3297 6.8476 21 7 2.0293 -11.0451 6.7070 22 14 4.6210 -11.0679 7.6861 23 1 4.5547 -10.7983 9.1449 24 1 4.6451 -12.5345 7.4545 25 1 5.8534 -10.4579 7.1255 26 6 4.2400 -5.2286 2.8331 27 6 4.5968 -3.9417 2.4870 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6055 -1.7198 1.2951 36 1 1.7517 -0.1583 2.1370 37 1 3.9646 -0.6667 0.3541 38 1 2.2909 -2.2247 4.2590 39 1 1.6303 -4.5108 4.8810 40 1 0.9454 -5.6412 6.1040 41 1 2.1645 -6.2770 7.2344 42 1 2.6413 -5.1171 5.9714 43 1 1.1170 -8.4395 6.3919 44 1 1.7059 -9.0318 4.8201 45 1 1.9995 -11.9561 7.0390 46 1 4.7899 -6.0685 2.4347 47 1 5.4274 -3.7746 1.8172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069452506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:14 Heat of formation + Delta-G solvation = -75.319808 kcal Electronic energy + Delta-G solvation = -29143.664169 eV Core-core repulsion = 25032.984861 eV Total energy + Delta-G solvation = -4110.679308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.17355 -38.07778 -37.79935 -37.34696 -36.09861 -35.16895 -33.36294 -32.90221 -31.52410 -31.24954 -27.88198 -27.60856 -26.38418 -26.05368 -24.37562 -22.96845 -22.36251 -20.97404 -19.76771 -19.39572 -18.18438 -17.56310 -16.98986 -16.62408 -16.57977 -16.07752 -15.66050 -15.18422 -14.86964 -14.78746 -14.57480 -14.34212 -14.28137 -13.78283 -13.67375 -13.52555 -13.21940 -12.98148 -12.66765 -12.62424 -12.52094 -12.36812 -12.34481 -12.27325 -12.20623 -11.93453 -11.51743 -11.39373 -11.32682 -11.22828 -11.13691 -11.02252 -10.90973 -10.65609 -10.24378 -9.91893 -9.75987 -9.47035 -9.21163 -9.09210 -8.51075 -7.82914 -6.12360 -4.17839 0.07666 0.44228 1.14101 2.63678 2.99671 3.25959 3.32743 3.36519 3.45844 3.59019 3.87187 4.04774 4.25684 4.37991 4.42057 4.51732 4.61721 4.67718 4.79460 4.95733 5.08033 5.09480 5.12646 5.20023 5.22317 5.23726 5.37409 5.41387 5.47051 5.53725 5.54317 5.65704 5.69631 5.74843 5.83571 5.85464 5.88903 5.91983 6.10784 6.19216 6.55125 6.60262 6.91213 7.30102 7.37318 7.83093 8.12209 8.18299 8.72391 8.89585 9.47557 10.95758 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002232 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.551977 B =12540.209620 C =13162.757899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.151 4.151 4 C 0.117 3.883 5 N -1.116 6.116 6 S 2.698 3.302 7 O -0.959 6.959 8 O -0.956 6.956 9 C -0.670 4.670 10 C -0.032 4.032 11 C -0.127 4.127 12 C -0.056 4.056 13 C 0.537 3.463 14 O -0.529 6.529 15 N -0.588 5.588 16 C 0.061 3.939 17 C 0.244 3.756 18 C -0.531 4.531 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.089 4.089 27 C -0.026 4.026 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.418 0.582 38 H 0.143 0.857 39 H 0.155 0.845 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.048 0.952 45 H 0.264 0.736 46 H 0.143 0.857 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 25.228 -11.919 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.208 4.208 4 C -0.009 4.009 5 N -0.877 5.877 6 S 2.788 3.212 7 O -0.949 6.949 8 O -0.946 6.946 9 C -0.758 4.758 10 C -0.052 4.052 11 C -0.146 4.146 12 C -0.060 4.060 13 C 0.323 3.677 14 O -0.407 6.407 15 N -0.319 5.319 16 C -0.082 4.082 17 C 0.125 3.875 18 C -0.570 4.570 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.531 5.531 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.109 4.109 27 C -0.046 4.046 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.253 0.747 38 H 0.161 0.839 39 H 0.172 0.828 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.161 0.839 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.062 25.017 -11.641 27.670 hybrid contribution 0.609 -1.217 0.210 1.377 sum -1.453 23.800 -11.431 26.443 Atomic orbital electron populations 1.21812 0.94063 1.02396 1.02422 1.21299 0.96504 0.96786 0.97564 1.21882 1.01354 0.95433 1.02152 1.21476 0.78456 1.00970 1.00023 1.55528 1.16716 1.86762 1.28659 1.01742 0.72802 0.73754 0.72879 1.93600 1.31481 1.87228 1.82585 1.93587 1.81586 1.63928 1.55451 1.30914 1.09135 1.23156 1.12592 1.20863 0.93383 0.97966 0.92957 1.22128 1.01174 0.91744 0.99532 1.20706 0.95364 0.94626 0.95271 1.18181 0.79340 0.87176 0.82973 1.90776 1.54388 1.45291 1.50275 1.48117 1.60210 1.10153 1.13408 1.22337 0.99597 0.90481 0.95810 1.19395 0.96583 0.74994 0.96526 1.21402 0.99212 0.98419 1.37962 0.92379 1.24942 0.96409 0.96707 0.95994 1.69928 1.27000 1.10006 1.46212 0.86463 0.82877 0.78383 0.79518 1.20540 1.20992 1.19856 1.21411 0.96000 0.97506 0.95972 1.20841 0.96547 0.91373 0.95805 0.92159 0.92122 0.92157 0.90358 0.92406 0.92472 0.92215 0.91332 0.89937 0.74697 0.83896 0.82794 0.92844 0.90545 0.90623 0.94566 0.93435 0.92586 0.83914 0.83885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.19 37.16 0.34 -0.31 16 2 C -0.10 -0.49 2.94 -90.62 -0.27 -0.75 16 3 C -0.15 -0.74 9.08 37.16 0.34 -0.40 16 4 C 0.12 0.69 5.61 -4.04 -0.02 0.66 16 5 N -1.12 -7.34 5.53 -10.61 -0.06 -7.40 16 6 S 2.70 26.62 5.73 -107.50 -0.62 26.01 16 7 O -0.96 -11.98 17.27 -57.17 -0.99 -12.97 16 8 O -0.96 -11.60 16.74 -57.17 -0.96 -12.55 16 9 C -0.67 -7.37 5.95 -39.49 -0.23 -7.60 16 10 C -0.03 -0.35 9.50 -39.64 -0.38 -0.72 16 11 C -0.13 -1.59 7.44 -39.19 -0.29 -1.88 16 12 C -0.06 -0.90 5.47 -104.97 -0.57 -1.47 16 13 C 0.54 11.19 7.44 -12.33 -0.09 11.10 16 14 O -0.53 -13.19 16.31 5.32 0.09 -13.10 16 15 N -0.59 -12.26 2.86 -184.08 -0.53 -12.78 16 16 C 0.06 0.93 8.80 59.85 0.53 1.46 16 17 C 0.24 6.25 5.21 -5.19 -0.03 6.22 16 18 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 22 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 26 C -0.09 -1.29 9.60 -39.18 -0.38 -1.67 16 27 C -0.03 -0.31 9.50 -39.64 -0.38 -0.69 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.28 7.54 -51.93 -0.39 -0.11 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.49 7.76 -51.93 -0.40 0.09 16 37 H 0.42 1.99 8.37 -34.47 -0.29 1.70 16 38 H 0.14 1.18 7.60 -52.49 -0.40 0.78 16 39 H 0.15 1.66 4.80 -52.48 -0.25 1.40 16 40 H 0.05 0.66 7.44 -51.93 -0.39 0.28 16 41 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 42 H 0.08 0.99 4.72 -51.93 -0.25 0.75 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.37 7.37 -51.93 -0.38 0.99 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 46 H 0.14 2.08 7.95 -52.48 -0.42 1.66 16 47 H 0.14 1.40 7.60 -52.48 -0.40 1.00 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -36.66 399.62 -10.08 -46.74 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.91 Total: -1.62 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.85 Total: -9.60 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.15 Total: -45.59 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -1.86 Total: -38.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 26.62 SS G_CDS: -0.62 Total: 26.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.66 -10.08 -46.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069452506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.577 kcal (2) G-P(sol) polarization free energy of solvation -36.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds