Wall clock time and date at job start Tue Mar 31 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47400 * 2 1 4 4 C 1.36901 * 120.00375 * 277.34497 * 3 2 1 5 5 H 1.08001 * 120.00598 * 182.52301 * 4 3 2 6 6 C 1.39020 * 119.99944 * 2.52677 * 4 3 2 7 7 N 1.31392 * 119.99996 * 10.52864 * 6 4 3 8 8 Si 1.86794 * 120.00276 * 190.53449 * 6 4 3 9 9 H 1.48494 * 109.47459 * 59.99641 * 8 6 4 10 10 H 1.48499 * 109.47675 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47141 * 299.99659 * 8 6 4 12 12 C 1.34775 * 120.00002 * 97.34558 * 3 2 1 13 13 O 1.21622 * 120.00607 * 184.97384 * 12 3 2 14 14 C 1.47500 * 120.00084 * 4.96816 * 12 3 2 15 15 C 1.39772 * 120.10482 * 132.65448 * 14 12 3 16 16 C 1.37778 * 119.95496 * 180.08660 * 15 14 12 17 17 Br 1.89088 * 119.87392 * 180.02562 * 16 15 14 18 18 C 1.39113 * 120.25291 * 0.02562 * 16 15 14 19 19 C 1.39242 * 120.05336 * 359.85398 * 18 16 15 20 20 C 1.38291 * 119.97602 * 0.19461 * 19 18 16 21 21 O 1.36148 * 120.75348 * 180.21143 * 19 18 16 22 22 C 1.43168 * 116.70371 * 342.75203 * 21 19 18 23 23 C 1.53468 * 108.23116 * 46.21261 * 22 21 19 24 24 O 1.35987 * 119.22608 * 179.65205 * 18 16 15 25 25 H 1.09002 * 109.46852 * 315.08807 * 1 2 3 26 26 H 1.08995 * 109.47439 * 75.08423 * 1 2 3 27 27 H 1.08999 * 109.47141 * 195.09019 * 1 2 3 28 28 H 1.09001 * 109.46743 * 240.00415 * 2 1 3 29 29 H 1.08996 * 109.47598 * 120.00638 * 2 1 3 30 30 H 0.96995 * 119.99996 * 179.97438 * 7 6 4 31 31 H 1.07997 * 120.02291 * 0.05978 * 15 14 12 32 32 H 1.07997 * 120.01793 * 179.91105 * 20 19 18 33 33 H 1.09002 * 109.70885 * 165.90165 * 22 21 19 34 34 H 1.09000 * 109.70694 * 286.52606 * 22 21 19 35 35 H 1.09001 * 109.70217 * 180.51460 * 23 22 21 36 36 H 1.08991 * 109.74998 * 59.90688 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1037 2.0771 -1.1758 5 1 2.5019 3.0810 -1.1816 6 6 1.6776 1.4916 -2.3626 7 7 1.0068 0.3622 -2.3341 8 14 2.0590 2.3105 -3.9976 9 1 3.5302 2.4256 -4.1624 10 1 1.5001 1.4920 -5.1035 11 1 1.4502 3.6646 -4.0270 12 6 2.3837 1.9668 1.1576 13 8 2.7029 3.1403 1.1714 14 6 2.3964 1.1845 2.4080 15 6 3.5008 1.2462 3.2624 16 6 3.5101 0.5127 4.4288 17 35 5.0051 0.5985 5.5833 18 6 2.4238 -0.2906 4.7602 19 6 1.3197 -0.3542 3.9142 20 6 1.3046 0.3787 2.7416 21 8 0.2471 -1.1324 4.2267 22 6 0.4526 -2.1421 5.2206 23 6 1.2072 -1.5103 6.3981 24 8 2.4581 -1.0112 5.9130 25 1 -0.3633 0.7278 0.7256 26 1 -0.3634 0.2645 -0.9930 27 1 -0.3633 -0.9922 0.2675 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.7092 -0.0461 -3.1621 31 1 4.3465 1.8680 3.0084 32 1 0.4492 0.3288 2.0842 33 1 -0.5099 -2.5228 5.5624 34 1 1.0426 -2.9567 4.8005 35 1 1.3848 -2.2624 7.1669 36 1 0.6210 -0.6909 6.8141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069456335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:50 Heat of formation + Delta-G solvation = -41.580409 kcal Electronic energy + Delta-G solvation = -23953.548218 eV Core-core repulsion = 20258.475718 eV Total energy + Delta-G solvation = -3695.072501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.025 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26568 -39.14124 -37.30940 -36.94986 -35.23708 -32.39075 -31.54675 -31.15634 -29.74046 -28.80342 -28.53709 -25.64958 -24.51004 -22.65769 -22.18743 -21.41666 -19.53360 -18.51270 -17.57704 -16.89157 -16.84146 -16.15478 -15.41089 -15.09656 -14.77809 -14.46506 -14.35078 -14.14614 -14.03152 -13.58511 -13.36765 -12.97903 -12.66657 -12.23617 -11.86658 -11.66882 -11.48409 -11.24176 -11.21232 -11.09095 -10.81160 -10.49638 -10.46496 -10.30188 -10.12459 -10.11670 -9.91433 -8.92871 -8.60555 -8.30372 -7.95398 -7.83832 -6.32364 -3.89376 1.10723 1.32948 1.71862 2.89596 3.09492 3.16119 3.19703 3.23807 3.51348 3.99394 4.10583 4.12266 4.65257 4.66887 4.71756 4.79363 5.04629 5.07137 5.23552 5.31239 5.45480 5.54938 5.75276 6.01269 6.07036 6.22959 6.52936 6.59564 6.66339 6.71473 6.79181 6.81602 7.29664 7.35696 7.49679 7.81959 7.97162 8.42251 9.06929 9.30902 9.86359 10.53342 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.015468 B = 0.003821 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.736786 B = 7325.609991 C = 8788.831701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.110 3.890 3 N -0.423 5.423 4 C -0.290 4.290 5 H 0.108 0.892 6 C 0.023 3.977 7 N -0.869 5.869 8 Si 0.935 3.065 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.470 3.530 13 O -0.588 6.588 14 C -0.076 4.076 15 C -0.050 4.050 16 C -0.093 4.093 17 Br -0.040 7.040 18 C 0.073 3.927 19 C 0.048 3.952 20 C -0.086 4.086 21 O -0.301 6.301 22 C 0.020 3.980 23 C 0.020 3.980 24 O -0.295 6.295 25 H 0.026 0.974 26 H 0.108 0.892 27 H 0.033 0.967 28 H 0.114 0.886 29 H 0.036 0.964 30 H 0.268 0.732 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -8.303 15.108 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.139 5.139 4 C -0.417 4.417 5 H 0.126 0.874 6 C -0.179 4.179 7 N -0.510 5.510 8 Si 0.762 3.238 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.258 3.742 13 O -0.475 6.475 14 C -0.081 4.081 15 C -0.071 4.071 16 C -0.173 4.173 17 Br 0.045 6.955 18 C 0.025 3.975 19 C 0.003 3.997 20 C -0.105 4.105 21 O -0.216 6.216 22 C -0.056 4.056 23 C -0.056 4.056 24 O -0.209 6.209 25 H 0.045 0.955 26 H 0.127 0.873 27 H 0.052 0.948 28 H 0.132 0.868 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.163 0.837 32 H 0.178 0.822 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.139 0.861 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.268 -7.884 15.379 17.328 hybrid contribution -0.438 -0.074 -0.744 0.867 sum 0.830 -7.958 14.635 16.679 Atomic orbital electron populations 1.22532 0.96457 0.97981 1.04461 1.21916 0.94905 0.83112 1.01331 1.43815 1.52587 1.12045 1.05473 1.19865 1.38448 1.00418 0.82998 0.87449 1.25344 0.95841 0.96671 0.99997 1.70043 1.34940 1.18504 1.27561 0.85836 0.79029 0.78910 0.80039 1.19816 1.20822 1.19790 1.17487 0.86966 0.87111 0.82617 1.90639 1.55679 1.15675 1.85504 1.20002 0.93523 0.97472 0.97091 1.20930 0.98710 0.96690 0.90799 1.20756 0.94259 1.03727 0.98518 1.96622 1.37457 1.98177 1.63234 1.18480 0.95014 0.96483 0.87529 1.18584 0.88185 0.97902 0.95044 1.21453 1.00382 0.95104 0.93555 1.86370 1.32262 1.45486 1.57437 1.23623 1.03269 0.90064 0.88664 1.23649 0.85069 1.00169 0.96709 1.86351 1.31156 1.66589 1.36836 0.95516 0.87348 0.94757 0.86797 0.94568 0.92080 0.83669 0.82240 0.86110 0.90416 0.86083 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.50 37.16 0.32 -2.96 16 2 C 0.11 2.46 4.88 -4.04 -0.02 2.44 16 3 N -0.42 -10.66 2.64 -116.01 -0.31 -10.96 16 4 C -0.29 -7.73 9.50 -15.00 -0.14 -7.88 16 5 H 0.11 3.01 7.20 -52.49 -0.38 2.64 16 6 C 0.02 0.57 5.32 -17.45 -0.09 0.47 16 7 N -0.87 -20.94 7.12 55.50 0.40 -20.55 16 8 Si 0.94 19.78 29.57 -169.99 -5.03 14.75 16 9 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 C 0.47 11.70 7.19 -12.49 -0.09 11.61 16 13 O -0.59 -16.53 16.60 5.26 0.09 -16.44 16 14 C -0.08 -1.57 5.00 -104.99 -0.52 -2.10 16 15 C -0.05 -0.94 9.43 -39.18 -0.37 -1.31 16 16 C -0.09 -1.55 6.23 -39.42 -0.25 -1.80 16 17 Br -0.04 -0.58 33.09 -68.01 -2.25 -2.83 16 18 C 0.07 1.16 6.50 -38.88 -0.25 0.91 16 19 C 0.05 0.80 6.48 -39.19 -0.25 0.55 16 20 C -0.09 -1.60 7.37 -39.00 -0.29 -1.89 16 21 O -0.30 -4.33 10.41 -32.97 -0.34 -4.67 16 22 C 0.02 0.19 7.26 37.40 0.27 0.46 16 23 C 0.02 0.18 7.26 37.40 0.27 0.45 16 24 O -0.30 -4.02 9.68 -32.46 -0.31 -4.33 16 25 H 0.03 0.55 6.45 -51.93 -0.34 0.21 16 26 H 0.11 2.50 5.58 -51.93 -0.29 2.21 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.11 2.72 5.87 -51.93 -0.30 2.41 16 29 H 0.04 0.74 5.24 -51.93 -0.27 0.47 16 30 H 0.27 6.14 8.31 -40.82 -0.34 5.81 16 31 H 0.15 2.67 8.06 -52.49 -0.42 2.24 16 32 H 0.16 3.04 3.90 -52.49 -0.20 2.84 16 33 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -29.50 312.67 -7.92 -37.42 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.46 Total: 3.94 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.42 Total: -1.03 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.09 Total: -31.51 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.57 Total: -25.45 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.25 Total: -2.83 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.50 -7.92 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069456335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.163 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds