Wall clock time and date at job start Tue Mar 31 2020 05:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46854 * 122.32756 * 3 2 1 5 5 C 1.36896 * 120.00152 * 89.19451 * 4 3 2 6 6 H 1.07999 * 120.00180 * 167.51025 * 5 4 3 7 7 C 1.39026 * 119.99628 * 347.50331 * 5 4 3 8 8 N 1.31378 * 120.00438 * 338.78179 * 7 5 4 9 9 Si 1.86805 * 119.99447 * 158.77600 * 7 5 4 10 10 H 1.48495 * 109.47373 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47044 * 120.00377 * 9 7 5 12 12 H 1.48510 * 109.46725 * 240.00027 * 9 7 5 13 13 C 1.34776 * 119.99843 * 269.18989 * 4 3 2 14 14 O 1.21625 * 119.99819 * 183.67336 * 13 4 3 15 15 C 1.47517 * 120.00210 * 3.67126 * 13 4 3 16 16 C 1.39921 * 120.02462 * 231.76687 * 15 13 4 17 17 C 1.37628 * 120.14317 * 180.02562 * 16 15 13 18 18 C 1.38986 * 120.05485 * 359.97389 * 17 16 15 19 19 C 1.39892 * 120.08990 * 0.02562 * 18 17 16 20 20 C 1.38234 * 120.03702 * 0.02562 * 19 18 17 21 21 N 1.39377 * 106.73713 * 179.97438 * 19 18 17 22 22 H 0.97002 * 125.86576 * 180.02562 * 21 19 18 23 23 C 1.34630 * 108.26842 * 359.77100 * 21 19 18 24 24 O 1.21674 * 125.14889 * 180.22836 * 23 21 19 25 25 N 1.34603 * 109.71415 * 0.37726 * 23 21 19 26 26 C 1.46501 * 125.75996 * 179.88595 * 25 23 21 27 27 C 1.54268 * 110.48451 * 299.69354 * 26 25 23 28 28 C 1.53878 * 106.59653 * 142.28829 * 27 26 25 29 29 C 1.54264 * 106.63930 * 359.97079 * 28 27 26 30 30 C 1.54887 * 110.48282 * 54.46957 * 26 25 23 31 31 H 1.09001 * 109.46961 * 2.33023 * 3 2 1 32 32 H 1.08997 * 109.46877 * 242.32710 * 3 2 1 33 33 H 0.97004 * 120.00295 * 180.02562 * 8 7 5 34 34 H 1.08004 * 119.93456 * 0.02562 * 16 15 13 35 35 H 1.08003 * 119.97494 * 179.97438 * 17 16 15 36 36 H 1.07999 * 120.13221 * 180.02562 * 20 19 18 37 37 H 1.09001 * 110.54076 * 177.07848 * 26 25 23 38 38 H 1.08995 * 110.02992 * 23.00293 * 27 26 25 39 39 H 1.08999 * 110.03118 * 261.57047 * 27 26 25 40 40 H 1.08998 * 110.03500 * 119.28192 * 28 27 26 41 41 H 1.09001 * 110.03092 * 240.66784 * 28 27 26 42 42 H 1.09003 * 110.48703 * 95.09683 * 29 28 27 43 43 H 1.08994 * 110.48862 * 217.73510 * 29 28 27 44 44 H 1.08998 * 110.76003 * 321.68896 * 30 26 25 45 45 H 1.08998 * 110.75815 * 85.06852 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7395 -1.1672 5 6 3.3078 2.0894 -1.0833 6 1 3.8517 2.6002 -1.8641 7 6 2.8226 2.8026 0.0070 8 7 1.8375 2.3141 0.7260 9 14 3.5717 4.4557 0.4497 10 1 4.6579 4.7798 -0.5095 11 1 2.5247 5.5069 0.3849 12 1 4.1274 4.3947 1.8256 13 6 3.3364 0.0902 -2.3235 14 8 3.8045 0.6906 -3.2720 15 6 3.0319 -1.3486 -2.4386 16 6 4.0093 -2.2362 -2.9018 17 6 3.7277 -3.5790 -3.0107 18 6 2.4707 -4.0572 -2.6601 19 6 1.4889 -3.1751 -2.1963 20 6 1.7674 -1.8256 -2.0865 21 7 0.3547 -3.9404 -1.9311 22 1 -0.4916 -3.6050 -1.5961 23 6 0.6336 -5.2243 -2.2250 24 8 -0.1432 -6.1538 -2.1105 25 7 1.9029 -5.3247 -2.6615 26 6 2.5709 -6.5614 -3.0744 27 6 2.6113 -7.5690 -1.9069 28 6 2.3868 -8.9621 -2.5206 29 6 2.2170 -8.7535 -4.0397 30 6 1.7473 -7.2825 -4.1702 31 1 2.9718 -1.0260 -0.0418 32 1 2.9711 0.4781 0.9101 33 1 1.4988 2.8120 1.4864 34 1 4.9870 -1.8670 -3.1744 35 1 4.4840 -4.2616 -3.3689 36 1 1.0108 -1.1433 -1.7282 37 1 3.5790 -6.3507 -3.4316 38 1 1.8199 -7.3439 -1.1921 39 1 3.5826 -7.5303 -1.4138 40 1 3.2491 -9.5995 -2.3254 41 1 1.4869 -9.4135 -2.1029 42 1 3.1677 -8.8972 -4.5531 43 1 1.4620 -9.4324 -4.4359 44 1 0.6794 -7.1994 -3.9683 45 1 1.9870 -6.8864 -5.1570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069463247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:16 Heat of formation + Delta-G solvation = 35.173657 kcal Electronic energy + Delta-G solvation = -31395.269461 eV Core-core repulsion = 27186.230309 eV Total energy + Delta-G solvation = -4209.039152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.55390 -39.49938 -38.34087 -37.63619 -36.01034 -35.55218 -34.39810 -34.18154 -32.04007 -30.34232 -29.12267 -29.00295 -28.06535 -27.53448 -25.21844 -23.18165 -22.89795 -22.28211 -20.78717 -20.11246 -19.65030 -18.30184 -18.08665 -17.44241 -16.63644 -16.36779 -16.27693 -16.12078 -15.79185 -15.36696 -14.62090 -14.56784 -14.33386 -14.13464 -14.10452 -13.75122 -13.53563 -13.12990 -12.93826 -12.76977 -12.65526 -12.38113 -12.16330 -12.09503 -11.68506 -11.51190 -11.46622 -11.40138 -11.31438 -11.23519 -11.08137 -10.90483 -10.67272 -10.55565 -10.50649 -10.42225 -10.30271 -10.17266 -9.39632 -8.84218 -8.38343 -8.22311 -7.75117 -6.64446 -4.09343 1.13313 1.36353 2.21583 2.87751 3.00412 3.16327 3.22508 3.25258 3.40050 3.62716 3.88781 3.92900 4.04865 4.24507 4.29405 4.41757 4.60835 4.63627 4.78419 4.82173 4.95203 5.08561 5.17914 5.18578 5.22304 5.33303 5.35598 5.37094 5.43920 5.49785 5.57584 5.64112 5.76774 5.81336 5.91860 5.95976 5.99029 6.08559 6.09190 6.28894 6.44852 6.49500 6.61040 6.68928 6.87110 7.27229 7.34810 7.74671 8.15040 8.20768 8.66643 8.86087 9.05458 9.58756 10.40264 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.022143 B = 0.002662 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.214210 B =10516.960814 C =11223.267150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.256 3.744 3 C 0.219 3.781 4 N -0.430 5.430 5 C -0.312 4.312 6 H 0.115 0.885 7 C 0.032 3.968 8 N -0.874 5.874 9 Si 0.931 3.069 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.489 3.511 14 O -0.566 6.566 15 C -0.087 4.087 16 C -0.065 4.065 17 C -0.111 4.111 18 C 0.094 3.906 19 C 0.086 3.914 20 C -0.088 4.088 21 N -0.642 5.642 22 H 0.435 0.565 23 C 0.683 3.317 24 O -0.559 6.559 25 N -0.530 5.530 26 C 0.158 3.842 27 C -0.136 4.136 28 C -0.118 4.118 29 C -0.119 4.119 30 C -0.140 4.140 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.276 0.724 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.306 -18.028 -3.154 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.061 4.061 3 C 0.091 3.909 4 N -0.149 5.149 5 C -0.438 4.438 6 H 0.133 0.867 7 C -0.172 4.172 8 N -0.513 5.513 9 Si 0.757 3.243 10 H -0.189 1.189 11 H -0.208 1.208 12 H -0.203 1.203 13 C 0.278 3.722 14 O -0.449 6.449 15 C -0.093 4.093 16 C -0.085 4.085 17 C -0.133 4.133 18 C -0.007 4.007 19 C -0.016 4.016 20 C -0.110 4.110 21 N -0.288 5.288 22 H 0.276 0.724 23 C 0.385 3.615 24 O -0.436 6.436 25 N -0.251 5.251 26 C 0.056 3.944 27 C -0.174 4.174 28 C -0.156 4.156 29 C -0.157 4.157 30 C -0.178 4.178 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.309 -18.434 -3.396 19.035 hybrid contribution 0.020 1.208 0.667 1.380 sum 3.329 -17.226 -2.729 17.756 Atomic orbital electron populations 1.80921 1.13348 1.12504 1.08980 1.29050 0.95280 0.89731 0.92047 1.18895 0.81925 0.96454 0.93597 1.43609 1.55521 1.08119 1.07630 1.19848 1.34069 0.81782 1.08150 0.86749 1.25315 0.94755 1.00376 0.96715 1.69740 1.21574 1.40337 1.19628 0.85787 0.79250 0.80672 0.78617 1.18908 1.20819 1.20312 1.17754 0.85499 0.85624 0.83319 1.90674 1.48847 1.67995 1.37421 1.19921 0.93356 0.95067 1.00916 1.20912 0.99473 0.90884 0.97267 1.19911 0.93356 0.95790 1.04219 1.18165 0.95167 0.83432 1.03958 1.17792 0.86558 0.92693 1.04551 1.20610 0.97849 0.91559 1.01009 1.43032 1.14797 1.06980 1.63953 0.72355 1.15895 0.82192 0.83031 0.80413 1.91020 1.51440 1.39706 1.61421 1.45079 1.11803 1.06528 1.61732 1.22076 0.96201 0.80953 0.95210 1.22502 1.02795 0.94284 0.97805 1.22039 1.01945 0.96265 0.95387 1.22276 1.01288 0.95881 0.96281 1.22943 1.01962 0.95120 0.97804 0.89645 0.85514 0.91306 0.84148 0.85108 0.84411 0.87643 0.90386 0.91061 0.91586 0.91407 0.91351 0.91171 0.89286 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.63 18.10 42.15 0.76 -9.87 16 2 C 0.26 5.37 10.14 -20.76 -0.21 5.16 16 3 C 0.22 4.18 4.76 -6.83 -0.03 4.15 16 4 N -0.43 -9.54 2.58 -119.12 -0.31 -9.85 16 5 C -0.31 -7.61 9.41 -15.00 -0.14 -7.75 16 6 H 0.11 2.96 7.30 -52.49 -0.38 2.57 16 7 C 0.03 0.76 4.95 -17.45 -0.09 0.67 16 8 N -0.87 -20.85 8.95 55.50 0.50 -20.35 16 9 Si 0.93 18.75 29.60 -169.99 -5.03 13.72 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.49 10.59 7.11 -12.48 -0.09 10.50 16 14 O -0.57 -14.17 16.66 5.26 0.09 -14.08 16 15 C -0.09 -1.50 4.60 -104.96 -0.48 -1.99 16 16 C -0.06 -0.90 9.72 -39.17 -0.38 -1.28 16 17 C -0.11 -1.30 9.84 -39.53 -0.39 -1.69 16 18 C 0.09 1.25 6.83 -83.77 -0.57 0.68 16 19 C 0.09 1.28 7.24 -83.81 -0.61 0.67 16 20 C -0.09 -1.46 7.80 -39.05 -0.30 -1.77 16 21 N -0.64 -9.14 6.16 -14.33 -0.09 -9.22 16 22 H 0.43 5.60 8.96 -40.82 -0.37 5.23 16 23 C 0.68 10.13 7.89 -87.21 -0.69 9.44 16 24 O -0.56 -9.40 15.52 5.21 0.08 -9.32 16 25 N -0.53 -6.73 2.75 -109.98 -0.30 -7.03 16 26 C 0.16 1.56 3.53 -66.27 -0.23 1.32 16 27 C -0.14 -1.27 6.36 -25.61 -0.16 -1.44 16 28 C -0.12 -0.93 6.80 -25.61 -0.17 -1.11 16 29 C -0.12 -0.89 6.84 -25.03 -0.17 -1.06 16 30 C -0.14 -1.34 6.40 -24.70 -0.16 -1.50 16 31 H 0.09 1.33 6.49 -51.93 -0.34 0.99 16 32 H 0.13 2.47 6.53 -51.93 -0.34 2.13 16 33 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 34 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.13 1.10 7.65 -52.48 -0.40 0.70 16 36 H 0.14 2.56 4.70 -52.49 -0.25 2.31 16 37 H 0.11 0.82 7.52 -51.93 -0.39 0.42 16 38 H 0.08 0.94 6.83 -51.93 -0.35 0.58 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 1.10 6.35 -51.93 -0.33 0.77 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -30.32 369.44 -8.86 -39.18 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.24 Total: 8.24 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: -4.88 Total: 13.01 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.56 Total: -56.32 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.32 -8.86 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069463247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.352 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds