Wall clock time and date at job start Tue Mar 31 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00176 * 2 1 4 4 H 1.48493 * 109.46983 * 270.00110 * 3 2 1 5 5 H 1.48497 * 109.47094 * 30.00625 * 3 2 1 6 6 H 1.48500 * 109.47053 * 150.00260 * 3 2 1 7 7 C 1.37878 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00231 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99914 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00000 * 90.00070 * 10 9 7 12 12 C 1.50695 * 109.47220 * 270.00006 * 11 10 9 13 13 C 1.38235 * 119.62125 * 94.99848 * 12 11 10 14 14 C 1.38620 * 119.16331 * 179.72806 * 13 12 11 15 15 C 1.38676 * 118.42038 * 359.97438 * 14 13 12 16 16 C 1.38174 * 119.16571 * 0.02562 * 15 14 13 17 17 N 1.31850 * 119.61978 * 274.72718 * 12 11 10 18 18 C 1.34774 * 120.00090 * 269.99749 * 10 9 7 19 19 O 1.21277 * 120.00289 * 180.02562 * 18 10 9 20 20 C 1.50701 * 119.99713 * 0.02562 * 18 10 9 21 21 H 1.08995 * 115.55432 * 34.27261 * 20 18 10 22 22 C 1.53004 * 117.49720 * 248.60581 * 20 18 10 23 23 C 1.53001 * 60.00163 * 252.51392 * 22 20 18 24 24 H 1.09002 * 117.49437 * 252.51174 * 23 22 20 25 25 C 1.50693 * 117.50209 * 107.48775 * 23 22 20 26 26 C 1.38264 * 119.98757 * 171.38009 * 25 23 22 27 27 C 1.38219 * 120.05490 * 180.02562 * 26 25 23 28 28 C 1.38219 * 120.02559 * 359.97438 * 27 26 25 29 29 C 1.38437 * 119.97149 * 0.02562 * 28 27 26 30 30 F 1.35102 * 120.02469 * 180.02562 * 29 28 27 31 31 C 1.38175 * 119.99053 * 351.10843 * 25 23 22 32 32 H 0.97003 * 119.99583 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47116 * 59.99889 * 9 7 2 34 34 H 1.08998 * 109.47235 * 299.99766 * 9 7 2 35 35 H 1.08997 * 109.47368 * 149.99691 * 11 10 9 36 36 H 1.09007 * 109.47224 * 29.99706 * 11 10 9 37 37 H 1.07998 * 120.41461 * 359.74373 * 13 12 11 38 38 H 1.07997 * 120.79329 * 179.97438 * 14 13 12 39 39 H 1.08005 * 120.42039 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.62058 * 179.97438 * 16 15 14 41 41 H 1.09002 * 117.49438 * 359.97438 * 22 20 18 42 42 H 1.08991 * 117.50507 * 145.00016 * 22 20 18 43 43 H 1.07999 * 119.97480 * 0.02562 * 26 25 23 44 44 H 1.08004 * 119.99090 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.01672 * 180.02562 * 28 27 26 46 46 H 1.08002 * 120.01045 * 359.97438 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 1.2682 12 6 3.9220 -3.4372 1.7032 13 6 3.8175 -2.3774 2.5845 14 6 4.9677 -1.7141 2.9828 15 6 6.1857 -2.1438 2.4780 16 6 6.2123 -3.2109 1.6006 17 7 5.0974 -3.8182 1.2431 18 6 2.6408 -4.1250 -1.1677 19 8 3.4285 -5.0471 -1.1677 20 6 2.1515 -3.5519 -2.4728 21 1 1.9628 -2.4784 -2.4735 22 6 1.2398 -4.4300 -3.3323 23 6 2.6859 -4.1767 -3.7632 24 1 2.8490 -3.5140 -4.6132 25 6 3.6612 -5.3178 -3.6318 26 6 4.9310 -5.2069 -4.1677 27 6 5.8265 -6.2530 -4.0484 28 6 5.4537 -7.4112 -3.3926 29 6 4.1827 -7.5234 -2.8556 30 9 3.8174 -8.6548 -2.2139 31 6 3.2883 -6.4725 -2.9708 32 1 -0.4850 0.8401 0.0004 33 1 0.6239 -2.5567 -0.8902 34 1 0.6246 -2.5571 0.8897 35 1 2.9072 -5.2273 1.1379 36 1 1.9055 -4.0556 2.0279 37 1 2.8519 -2.0702 2.9582 38 1 4.9165 -0.8825 3.6699 39 1 7.1021 -1.6506 2.7670 40 1 7.1568 -3.5514 1.2026 41 1 0.9944 -5.4223 -2.9540 42 1 0.4515 -3.9342 -3.8986 43 1 5.2233 -4.3022 -4.6799 44 1 6.8179 -6.1654 -4.4678 45 1 6.1537 -8.2283 -3.2991 46 1 2.2980 -6.5571 -2.5481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069492917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:35 Heat of formation + Delta-G solvation = 20.560581 kcal Electronic energy + Delta-G solvation = -31885.726697 eV Core-core repulsion = 27656.133913 eV Total energy + Delta-G solvation = -4229.592784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.48483 -40.17539 -39.59048 -38.17756 -36.03467 -34.93277 -32.79627 -31.97236 -31.30837 -30.34165 -30.09405 -27.71623 -26.39344 -23.94412 -23.57201 -23.07641 -22.63212 -22.17087 -21.36250 -20.39103 -18.32035 -17.33169 -16.68314 -16.44938 -16.16597 -15.93055 -15.82358 -15.62429 -15.25847 -15.18633 -15.01313 -14.55927 -14.37883 -13.76187 -13.60975 -13.58579 -13.10632 -12.90700 -12.72714 -12.49388 -12.45519 -12.28887 -12.03791 -11.77583 -11.64449 -11.41306 -11.32824 -11.16786 -10.97113 -10.82711 -10.72469 -10.38846 -10.18623 -10.07955 -9.80257 -9.41681 -9.19009 -8.94435 -8.65188 -8.51925 -8.24825 -7.94386 -7.67721 -6.22576 -4.28676 1.50282 1.54874 1.65942 1.76652 3.16798 3.19451 3.25185 3.29879 3.82187 3.91857 4.27550 4.33965 4.44749 4.62947 4.76627 4.87379 5.01791 5.09816 5.14062 5.19770 5.22269 5.26624 5.28944 5.38033 5.46335 5.57415 5.60369 5.68447 5.72660 5.88583 5.95987 6.00429 6.09718 6.18117 6.23546 6.24771 6.39171 6.44344 6.52662 6.56284 6.62437 6.65183 6.71310 6.88459 7.12755 7.15655 7.28990 7.51808 7.73060 8.02639 8.31509 8.53244 8.78118 9.07161 9.39364 10.83834 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.009716 B = 0.004238 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.079174 B = 6605.381790 C = 8035.454808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.237 3.763 10 N -0.589 5.589 11 C 0.173 3.827 12 C 0.125 3.875 13 C -0.133 4.133 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.087 3.913 17 N -0.458 5.458 18 C 0.541 3.459 19 O -0.534 6.534 20 C -0.157 4.157 21 H 0.141 0.859 22 C -0.151 4.151 23 C -0.100 4.100 24 H 0.119 0.881 25 C -0.006 4.006 26 C -0.124 4.124 27 C -0.104 4.104 28 C -0.159 4.159 29 C 0.086 3.914 30 F -0.149 7.149 31 C -0.076 4.076 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.453 -7.433 -2.755 10.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.117 3.883 10 N -0.320 5.320 11 C 0.048 3.952 12 C -0.014 4.014 13 C -0.153 4.153 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.070 4.070 17 N -0.167 5.167 18 C 0.329 3.671 19 O -0.412 6.412 20 C -0.178 4.178 21 H 0.159 0.841 22 C -0.188 4.188 23 C -0.118 4.118 24 H 0.137 0.863 25 C -0.006 4.006 26 C -0.142 4.142 27 C -0.122 4.122 28 C -0.178 4.178 29 C 0.067 3.933 30 F -0.128 7.128 31 C -0.095 4.095 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.688 -8.537 -3.285 11.331 hybrid contribution 0.433 2.154 0.961 2.398 sum 7.121 -6.383 -2.324 9.841 Atomic orbital electron populations 1.69916 1.05874 1.27173 1.49967 1.24882 0.94729 0.98983 0.94944 0.86633 0.79953 0.83409 0.78376 1.20545 1.21102 1.19881 1.21454 0.93426 0.90340 1.51479 0.92357 1.19476 0.87371 0.82713 0.98714 1.48117 1.44947 1.35391 1.03504 1.20074 0.91046 0.97384 0.86674 1.21637 0.93659 0.93911 0.92198 1.21986 0.99463 0.95731 0.98149 1.21485 0.92568 0.98467 0.98524 1.22023 0.98534 0.99293 1.00354 1.22627 0.96710 0.92973 0.94739 1.67575 0.98090 1.29397 1.21645 1.19507 0.80713 0.82318 0.84582 1.90715 1.34483 1.29296 1.86743 1.22441 1.04198 1.01497 0.89631 0.84092 1.23067 0.92738 1.00871 1.02122 1.21085 0.94054 0.98451 0.98227 0.86300 1.18654 0.93729 0.92567 0.95677 1.20826 0.93098 0.98771 1.01498 1.20722 0.99208 0.92874 0.99400 1.20913 0.95071 0.99773 1.02046 1.17519 0.94512 0.83426 0.97892 1.91441 1.92186 1.49256 1.79927 1.20653 0.99760 0.91718 0.97373 0.92589 0.94030 0.94770 0.89410 0.89627 0.84662 0.85519 0.85730 0.83719 0.88406 0.87513 0.86198 0.85932 0.85862 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.41 13.29 55.43 0.74 -22.68 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -12.95 8.93 -34.44 -0.31 -13.25 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.24 5.27 4.85 -5.19 -0.03 5.25 16 10 N -0.59 -11.90 2.44 -176.44 -0.43 -12.33 16 11 C 0.17 3.20 5.76 -5.20 -0.03 3.17 16 12 C 0.13 2.38 6.36 -82.59 -0.53 1.85 16 13 C -0.13 -2.34 9.57 -39.44 -0.38 -2.72 16 14 C -0.08 -1.33 10.18 -39.28 -0.40 -1.72 16 15 C -0.18 -2.71 10.11 -39.44 -0.40 -3.10 16 16 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 17 N -0.46 -8.97 10.27 -9.47 -0.10 -9.07 16 18 C 0.54 10.82 7.31 -10.99 -0.08 10.74 16 19 O -0.53 -11.28 11.26 5.56 0.06 -11.22 16 20 C -0.16 -2.77 4.80 -91.77 -0.44 -3.21 16 21 H 0.14 2.72 6.99 -51.93 -0.36 2.36 16 22 C -0.15 -2.15 9.58 -26.73 -0.26 -2.41 16 23 C -0.10 -1.49 6.04 -91.77 -0.55 -2.04 16 24 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 25 C -0.01 -0.10 4.38 -104.64 -0.46 -0.55 16 26 C -0.12 -1.80 9.73 -39.58 -0.39 -2.19 16 27 C -0.10 -1.41 10.04 -39.60 -0.40 -1.81 16 28 C -0.16 -2.32 10.03 -39.52 -0.40 -2.72 16 29 C 0.09 1.42 7.30 -39.42 -0.29 1.13 16 30 F -0.15 -2.54 17.27 2.25 0.04 -2.50 16 31 C -0.08 -1.28 6.14 -39.52 -0.24 -1.52 16 32 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.04 0.96 6.64 -51.93 -0.34 0.61 16 34 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 35 H 0.09 1.65 7.42 -51.93 -0.39 1.27 16 36 H 0.09 1.40 7.79 -51.93 -0.40 0.99 16 37 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.10 1.38 6.18 -51.93 -0.32 1.06 16 42 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 45 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 46 H 0.12 2.07 5.76 -52.49 -0.30 1.77 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -29.60 390.62 -10.56 -40.16 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.88 Total: 8.94 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -5.86 Total: -12.25 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.21 Total: -44.08 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.06 Total: -11.22 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.60 -10.56 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069492917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.724 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds