Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99373 * 269.99940 * 10 9 7 12 12 C 1.50701 * 109.47319 * 90.00401 * 11 10 9 13 13 C 1.38219 * 119.61929 * 94.72550 * 12 11 10 14 14 C 1.38634 * 119.16115 * 179.71339 * 13 12 11 15 15 C 1.38671 * 118.41686 * 0.54517 * 14 13 12 16 16 C 1.38184 * 119.16346 * 359.73249 * 15 14 13 17 17 N 1.31853 * 119.61160 * 274.99428 * 12 11 10 18 18 C 1.34770 * 119.99985 * 89.99806 * 10 9 7 19 19 O 1.21286 * 119.99615 * 180.02562 * 18 10 9 20 20 C 1.50696 * 120.00499 * 359.97438 * 18 10 9 21 21 H 1.09001 * 115.54919 * 325.67728 * 20 18 10 22 22 C 1.52997 * 117.49758 * 111.37448 * 20 18 10 23 23 C 1.52997 * 60.00025 * 107.49246 * 22 20 18 24 24 H 1.08994 * 117.50552 * 252.51077 * 23 22 20 25 25 C 1.50703 * 117.51771 * 107.47762 * 23 22 20 26 26 C 1.38270 * 119.98571 * 351.10181 * 25 23 22 27 27 C 1.38224 * 120.04799 * 179.76317 * 26 25 23 28 28 C 1.38219 * 120.02626 * 0.50921 * 27 26 25 29 29 C 1.38437 * 119.97470 * 359.75054 * 28 27 26 30 30 F 1.35103 * 120.02527 * 179.97438 * 29 28 27 31 31 C 1.38176 * 119.98700 * 171.37310 * 25 23 22 32 32 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 34 34 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 35 35 H 1.09010 * 109.46689 * 209.99917 * 11 10 9 36 36 H 1.09003 * 109.47452 * 329.99593 * 11 10 9 37 37 H 1.08002 * 120.42546 * 359.97438 * 13 12 11 38 38 H 1.07999 * 120.78991 * 180.25714 * 14 13 12 39 39 H 1.07999 * 120.42166 * 179.76019 * 15 14 13 40 40 H 1.08003 * 119.62002 * 179.97438 * 16 15 14 41 41 H 1.08996 * 117.50286 * 214.98252 * 22 20 18 42 42 H 1.09008 * 117.49954 * 0.02562 * 22 20 18 43 43 H 1.08000 * 119.97343 * 0.02562 * 26 25 23 44 44 H 1.08005 * 119.98744 * 180.25010 * 27 26 25 45 45 H 1.07999 * 120.01454 * 179.71632 * 28 27 26 46 46 H 1.08003 * 120.01204 * 0.02562 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 4.2436 -3.2660 1.2697 12 6 2.9876 -3.9765 1.7042 13 6 2.8110 -5.3093 1.3832 14 6 1.6547 -5.9552 1.7928 15 6 0.7100 -5.2300 2.5032 16 6 0.9533 -3.8987 2.7821 17 7 2.0677 -3.3181 2.3814 18 6 4.2250 -3.2103 -1.1662 19 8 4.6288 -4.3539 -1.1662 20 6 3.9738 -2.4999 -2.4713 21 1 3.1379 -1.8003 -2.4724 22 6 5.1904 -2.1490 -3.3301 23 6 4.2484 -3.2747 -3.7617 24 1 4.6106 -4.2983 -3.6667 25 6 3.3424 -3.0124 -4.9370 26 6 3.2476 -1.7382 -5.4656 27 6 2.4207 -1.4971 -6.5466 28 6 1.6796 -2.5275 -7.0939 29 6 1.7696 -3.8025 -6.5621 30 9 1.0452 -4.8103 -7.0958 31 6 2.6024 -4.0440 -5.4824 32 1 -0.4850 0.8400 -0.0004 33 1 3.8753 -0.6803 -0.8889 34 1 3.8746 -0.6799 0.8911 35 1 5.0456 -3.9927 1.1396 36 1 4.5315 -2.5394 2.0296 37 1 3.5660 -5.8420 0.8241 38 1 1.4914 -6.9971 1.5600 39 1 -0.2042 -5.6999 2.8347 40 1 0.2224 -3.3268 3.3346 41 1 5.1551 -1.2184 -3.8965 42 1 6.1725 -2.4323 -2.9514 43 1 3.8233 -0.9317 -5.0361 44 1 2.3505 -0.5023 -6.9613 45 1 1.0301 -2.3380 -7.9357 46 1 2.6730 -5.0382 -5.0663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069492919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = 15.071698 kcal Electronic energy + Delta-G solvation = -30987.244680 eV Core-core repulsion = 26757.413880 eV Total energy + Delta-G solvation = -4229.830800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.85253 -40.16272 -39.58072 -38.70282 -36.19625 -35.13742 -32.62715 -31.94403 -31.39686 -30.99136 -30.11507 -28.13837 -26.63801 -24.12568 -23.56947 -23.01204 -22.65584 -22.24708 -21.39627 -20.44328 -18.36301 -17.53342 -17.05422 -16.64076 -16.39355 -16.14542 -16.11729 -15.61848 -15.52382 -15.49268 -15.14989 -14.64189 -14.43366 -13.88311 -13.73030 -13.58371 -13.22615 -13.02495 -12.81986 -12.61530 -12.52116 -12.41009 -12.16101 -12.02156 -11.87671 -11.69359 -11.52732 -11.36564 -10.95406 -10.85201 -10.71105 -10.46480 -10.26978 -10.24842 -9.60191 -9.36869 -9.27916 -8.84443 -8.81045 -8.63704 -8.56537 -8.47708 -7.85228 -6.10786 -4.09241 1.14726 1.22706 1.56030 1.80702 2.98110 3.20087 3.29056 3.30216 3.51928 3.69593 4.11382 4.30955 4.33677 4.43192 4.64784 4.80716 4.83654 4.99803 5.00506 5.07643 5.13284 5.15859 5.20136 5.26814 5.30020 5.44236 5.47926 5.56297 5.62663 5.75099 5.84540 5.91218 5.92830 6.08056 6.11215 6.12296 6.16630 6.23786 6.33486 6.34335 6.45126 6.58832 6.60162 6.61020 6.66898 6.90962 7.18619 7.24230 7.52314 8.05113 8.46545 8.63217 8.77428 8.98508 9.48237 11.02420 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.007995 B = 0.003866 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3501.509901 B = 7240.901176 C = 8566.311236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.866 3.134 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.210 3.790 10 N -0.578 5.578 11 C 0.172 3.828 12 C 0.119 3.881 13 C -0.157 4.157 14 C -0.088 4.088 15 C -0.180 4.180 16 C 0.104 3.896 17 N -0.437 5.437 18 C 0.550 3.450 19 O -0.567 6.567 20 C -0.158 4.158 21 H 0.142 0.858 22 C -0.147 4.147 23 C -0.096 4.096 24 H 0.126 0.874 25 C -0.014 4.014 26 C -0.127 4.127 27 C -0.087 4.087 28 C -0.162 4.162 29 C 0.098 3.902 30 F -0.143 7.143 31 C -0.145 4.145 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -5.482 -6.045 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.693 3.307 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.095 0.905 9 C 0.089 3.911 10 N -0.307 5.307 11 C 0.048 3.952 12 C -0.020 4.020 13 C -0.177 4.177 14 C -0.114 4.114 15 C -0.200 4.200 16 C -0.054 4.054 17 N -0.146 5.146 18 C 0.339 3.661 19 O -0.448 6.448 20 C -0.178 4.178 21 H 0.160 0.840 22 C -0.185 4.185 23 C -0.114 4.114 24 H 0.144 0.856 25 C -0.014 4.014 26 C -0.145 4.145 27 C -0.105 4.105 28 C -0.181 4.181 29 C 0.079 3.921 30 F -0.121 7.121 31 C -0.163 4.163 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.167 0.833 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.323 -5.067 -5.836 10.647 hybrid contribution -0.526 -0.023 -0.243 0.580 sum 6.797 -5.090 -6.079 10.443 Atomic orbital electron populations 1.69890 1.06139 1.26733 1.50316 1.24809 0.94627 0.98478 0.94674 0.87014 0.80572 0.84525 0.78558 1.20178 1.18948 1.21104 1.21221 0.88610 0.94820 1.50937 0.90539 1.19896 0.96399 0.77286 0.97516 1.47807 1.63532 1.15679 1.03689 1.20144 0.92404 0.96468 0.86219 1.21567 0.95936 0.90612 0.93883 1.22011 0.98913 0.96140 1.00656 1.21447 0.93691 0.99872 0.96378 1.22071 1.00149 0.96480 1.01339 1.22706 0.94459 0.91802 0.96408 1.67576 1.01198 1.37114 1.08688 1.19443 0.76471 0.85555 0.84662 1.90579 1.48514 1.17988 1.87735 1.22468 1.02671 1.03594 0.89096 0.84001 1.23092 0.94430 0.99254 1.01681 1.21036 0.99936 0.98678 0.91783 0.85623 1.18970 0.95210 0.92714 0.94495 1.21177 0.99868 0.96710 0.96784 1.20965 0.95189 0.98693 0.95640 1.21098 1.02761 0.91687 1.02512 1.17646 0.94186 0.85125 0.95155 1.91485 1.75881 1.59405 1.85371 1.20944 0.97965 1.00951 0.96478 0.92694 0.95156 0.94662 0.89306 0.89210 0.84982 0.85674 0.85588 0.83273 0.87638 0.87936 0.85005 0.85000 0.85008 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 19.80 27.47 -169.99 -4.67 15.14 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -13.46 9.33 -34.44 -0.32 -13.78 16 8 H 0.08 2.30 7.96 -52.49 -0.42 1.88 16 9 C 0.21 4.56 3.92 -5.19 -0.02 4.54 16 10 N -0.58 -11.47 2.44 -176.43 -0.43 -11.91 16 11 C 0.17 3.09 5.76 -5.19 -0.03 3.06 16 12 C 0.12 2.28 6.36 -82.59 -0.53 1.76 16 13 C -0.16 -2.72 9.72 -39.44 -0.38 -3.10 16 14 C -0.09 -1.36 10.18 -39.28 -0.40 -1.76 16 15 C -0.18 -2.80 10.11 -39.44 -0.40 -3.20 16 16 C 0.10 1.88 11.18 -17.55 -0.20 1.69 16 17 N -0.44 -9.00 9.88 -9.47 -0.09 -9.09 16 18 C 0.55 10.65 7.45 -10.99 -0.08 10.56 16 19 O -0.57 -11.49 15.76 5.55 0.09 -11.40 16 20 C -0.16 -2.70 4.43 -91.78 -0.41 -3.10 16 21 H 0.14 2.74 7.00 -51.93 -0.36 2.37 16 22 C -0.15 -1.94 9.56 -26.73 -0.26 -2.19 16 23 C -0.10 -1.40 5.55 -91.77 -0.51 -1.91 16 24 H 0.13 1.88 7.67 -51.93 -0.40 1.48 16 25 C -0.01 -0.19 5.61 -104.63 -0.59 -0.78 16 26 C -0.13 -1.63 9.29 -39.57 -0.37 -2.00 16 27 C -0.09 -1.01 10.04 -39.59 -0.40 -1.41 16 28 C -0.16 -1.97 10.03 -39.51 -0.40 -2.37 16 29 C 0.10 1.36 7.30 -39.42 -0.29 1.07 16 30 F -0.14 -2.03 17.27 2.25 0.04 -1.99 16 31 C -0.14 -2.05 9.72 -39.51 -0.38 -2.43 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 33 H 0.03 0.63 6.07 -51.93 -0.32 0.31 16 34 H 0.04 0.77 6.95 -51.93 -0.36 0.41 16 35 H 0.09 1.44 7.32 -51.92 -0.38 1.06 16 36 H 0.09 1.52 7.89 -51.93 -0.41 1.11 16 37 H 0.13 2.19 7.99 -52.49 -0.42 1.77 16 38 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.15 2.44 8.06 -52.48 -0.42 2.02 16 41 H 0.11 1.17 6.18 -51.93 -0.32 0.85 16 42 H 0.10 1.27 8.14 -51.92 -0.42 0.84 16 43 H 0.13 1.49 6.03 -52.49 -0.32 1.17 16 44 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 46 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -31.59 394.42 -10.22 -41.82 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.83 Total: 10.14 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -6.05 Total: -13.39 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.25 Total: -46.26 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.67 Total: 15.14 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.59 -10.22 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069492919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.889 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds