Wall clock time and date at job start Tue Mar 31 2020 05:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47280 * 299.99979 * 3 2 1 6 6 H 1.48502 * 109.47076 * 59.99828 * 3 2 1 7 7 C 1.37878 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99850 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46790 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00065 * 270.00060 * 10 9 7 12 12 C 1.50698 * 109.46954 * 269.99904 * 11 10 9 13 13 C 1.38226 * 119.61870 * 95.00060 * 12 11 10 14 14 C 1.38631 * 119.16350 * 179.97438 * 13 12 11 15 15 C 1.38672 * 118.41953 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16588 * 359.97438 * 15 14 13 17 17 N 1.31852 * 119.62070 * 274.72322 * 12 11 10 18 18 C 1.34778 * 120.00163 * 89.99883 * 10 9 7 19 19 O 1.21282 * 120.00431 * 179.97438 * 18 10 9 20 20 C 1.50707 * 119.99718 * 0.02562 * 18 10 9 21 21 H 1.09001 * 115.56098 * 34.30993 * 20 18 10 22 22 C 1.52997 * 117.49671 * 248.62130 * 20 18 10 23 23 C 1.53000 * 117.49697 * 179.97438 * 20 18 10 24 24 H 1.09000 * 117.51826 * 0.02562 * 23 20 18 25 25 C 1.50698 * 117.49774 * 214.97635 * 23 20 18 26 26 C 1.38271 * 119.98983 * 300.24395 * 25 23 20 27 27 C 1.38219 * 120.05279 * 180.25774 * 26 25 23 28 28 C 1.38227 * 120.02402 * 359.48356 * 27 26 25 29 29 C 1.38435 * 119.97416 * 0.26250 * 28 27 26 30 30 F 1.35097 * 120.02437 * 179.97438 * 29 28 27 31 31 C 1.38179 * 119.98470 * 119.98893 * 25 23 20 32 32 H 0.97001 * 120.00265 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.47319 * 60.00110 * 9 7 2 34 34 H 1.08997 * 109.47478 * 299.99543 * 9 7 2 35 35 H 1.08997 * 109.47449 * 29.99981 * 11 10 9 36 36 H 1.08999 * 109.47021 * 150.00123 * 11 10 9 37 37 H 1.07999 * 120.41772 * 359.95600 * 13 12 11 38 38 H 1.08007 * 120.78756 * 179.97438 * 14 13 12 39 39 H 1.07998 * 120.41913 * 179.97438 * 15 14 13 40 40 H 1.07992 * 119.61828 * 180.02562 * 16 15 14 41 41 H 1.09003 * 117.50213 * 145.02352 * 22 20 18 42 42 H 1.08998 * 117.49843 * 359.97438 * 22 20 18 43 43 H 1.08000 * 119.97479 * 0.02562 * 26 25 23 44 44 H 1.08002 * 119.99072 * 179.76964 * 27 26 25 45 45 H 1.07999 * 120.01289 * 180.23490 * 28 27 26 46 46 H 1.07993 * 120.01448 * 359.97438 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6791 -4.1694 -1.2682 12 6 1.7624 -5.2836 -1.7031 13 6 0.7317 -5.0156 -2.5844 14 6 -0.1055 -6.0477 -2.9787 15 6 0.1258 -7.3165 -2.4691 16 6 1.1761 -7.5087 -1.5919 17 7 1.9560 -6.5040 -1.2430 18 6 2.6410 -4.1249 1.1677 19 8 3.4288 -5.0470 1.1678 20 6 2.1509 -3.5525 2.4729 21 1 1.1195 -3.1997 2.4739 22 6 3.1599 -2.7881 3.3322 23 6 2.6847 -4.1777 3.7632 24 1 3.3907 -5.0027 3.6686 25 6 1.7446 -4.2580 4.9383 26 6 1.1994 -3.1028 5.4675 27 6 0.3412 -3.1745 6.5486 28 6 0.0185 -4.4024 7.0952 29 6 0.5595 -5.5601 6.5629 30 9 0.2452 -6.7607 7.0966 31 6 1.4235 -5.4866 5.4830 32 1 -0.4850 0.8400 -0.0004 33 1 0.6247 -2.5571 -0.8896 34 1 0.6240 -2.5567 0.8903 35 1 2.6868 -3.3878 -2.0278 36 1 3.6885 -4.5594 -1.1378 37 1 0.5805 -4.0147 -2.9608 38 1 -0.9192 -5.8678 -3.6658 39 1 -0.5068 -8.1441 -2.7542 40 1 1.3632 -8.4938 -1.1910 41 1 2.7924 -1.9325 3.8988 42 1 4.1782 -2.6996 2.9539 43 1 1.4474 -2.1433 5.0382 44 1 -0.0811 -2.2712 6.9635 45 1 -0.6551 -4.4585 7.9375 46 1 1.8458 -6.3891 5.0667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069492921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:43 Heat of formation + Delta-G solvation = 8.059437 kcal Electronic energy + Delta-G solvation = -30532.933444 eV Core-core repulsion = 26302.798569 eV Total energy + Delta-G solvation = -4230.134874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.88259 -40.14602 -39.69865 -38.64011 -36.08240 -34.99212 -32.86290 -32.18827 -31.44176 -30.99539 -30.10011 -27.71152 -26.51433 -24.09542 -23.47939 -23.34191 -22.78711 -22.60039 -21.44483 -20.36313 -18.25870 -17.50394 -16.84554 -16.67591 -16.28013 -16.11218 -16.07946 -15.82910 -15.59882 -15.49688 -15.26138 -14.66349 -14.37141 -14.16505 -13.67962 -13.58604 -13.33174 -13.12113 -12.86739 -12.67091 -12.50991 -12.39090 -12.06540 -11.89669 -11.68609 -11.55429 -11.49794 -11.31515 -10.96696 -10.91991 -10.78929 -10.41698 -10.19374 -10.05519 -9.81224 -9.65930 -9.15636 -9.12577 -8.85248 -8.76681 -8.58042 -8.48973 -7.77992 -6.21975 -4.28794 1.14352 1.21395 1.29573 1.51546 3.17829 3.19905 3.27600 3.31468 3.53819 3.74693 4.14920 4.22284 4.31228 4.43057 4.60274 4.69468 4.83854 4.97334 5.01449 5.04115 5.11358 5.14316 5.18170 5.24822 5.30699 5.32686 5.38872 5.46826 5.63800 5.77991 5.84066 5.86145 5.99154 6.03213 6.10225 6.13279 6.21458 6.28989 6.34315 6.36477 6.37852 6.41474 6.64043 6.71565 6.90710 6.91633 7.14998 7.48057 7.73087 8.01981 8.26188 8.34438 8.76857 9.02345 9.39144 10.84827 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.006330 B = 0.004068 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4422.555462 B = 6881.700650 C =10067.417223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.239 3.761 10 N -0.587 5.587 11 C 0.168 3.832 12 C 0.120 3.880 13 C -0.156 4.156 14 C -0.081 4.081 15 C -0.182 4.182 16 C 0.092 3.908 17 N -0.459 5.459 18 C 0.546 3.454 19 O -0.553 6.553 20 C -0.147 4.147 21 H 0.127 0.873 22 C -0.130 4.130 23 C -0.108 4.108 24 H 0.125 0.875 25 C -0.012 4.012 26 C -0.128 4.128 27 C -0.087 4.087 28 C -0.164 4.164 29 C 0.096 3.904 30 F -0.144 7.144 31 C -0.147 4.147 32 H 0.264 0.736 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -8.128 4.408 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.317 5.317 11 C 0.044 3.956 12 C -0.019 4.019 13 C -0.176 4.176 14 C -0.107 4.107 15 C -0.202 4.202 16 C -0.066 4.066 17 N -0.168 5.168 18 C 0.334 3.666 19 O -0.432 6.432 20 C -0.167 4.167 21 H 0.145 0.855 22 C -0.167 4.167 23 C -0.127 4.127 24 H 0.143 0.857 25 C -0.012 4.012 26 C -0.146 4.146 27 C -0.105 4.105 28 C -0.183 4.183 29 C 0.077 3.923 30 F -0.122 7.122 31 C -0.166 4.166 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.117 -8.656 4.986 9.991 hybrid contribution -0.793 0.969 -0.639 1.406 sum -0.910 -7.687 4.347 8.878 Atomic orbital electron populations 1.69932 1.05994 1.27144 1.49972 1.24914 0.94784 0.99168 0.94823 0.86503 0.80228 0.83391 0.77742 1.19598 1.20946 1.20872 1.21504 0.93653 0.90247 1.51618 0.91917 1.19468 0.87486 0.82587 0.98553 1.48037 1.45834 1.34456 1.03394 1.20125 0.96389 0.91908 0.87184 1.21900 0.94932 0.92797 0.92303 1.22121 0.95899 1.00542 0.99076 1.21546 0.98242 0.92758 0.98137 1.22090 1.00019 0.97992 1.00107 1.22760 0.91336 0.98058 0.94401 1.67645 1.27576 0.99671 1.21891 1.19428 0.80660 0.81911 0.84637 1.90633 1.35655 1.29424 1.87494 1.22259 1.01305 1.04072 0.89108 0.85498 1.22980 0.99313 0.93630 1.00780 1.21140 1.00636 0.99037 0.91836 0.85697 1.19036 0.95399 0.92150 0.94589 1.21268 0.97679 0.98961 0.96698 1.20987 0.96889 0.97033 0.95627 1.21093 1.03012 0.91690 1.02505 1.17655 0.98901 0.80542 0.95221 1.91480 1.91691 1.43653 1.85403 1.20969 0.99887 0.99124 0.96609 0.92621 0.94823 0.94390 0.88670 0.89153 0.84461 0.85132 0.85343 0.83305 0.87645 0.87952 0.84688 0.84985 0.85082 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.51 13.29 55.43 0.74 -22.77 16 2 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -13.03 9.39 -34.44 -0.32 -13.35 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.41 4.99 -5.19 -0.03 5.39 16 10 N -0.59 -12.12 2.44 -176.44 -0.43 -12.55 16 11 C 0.17 3.13 5.71 -5.20 -0.03 3.10 16 12 C 0.12 2.11 6.36 -82.59 -0.53 1.59 16 13 C -0.16 -2.39 9.72 -39.44 -0.38 -2.77 16 14 C -0.08 -1.05 10.18 -39.28 -0.40 -1.45 16 15 C -0.18 -2.26 10.11 -39.44 -0.40 -2.66 16 16 C 0.09 1.34 11.18 -17.55 -0.20 1.15 16 17 N -0.46 -8.30 10.27 -9.48 -0.10 -8.40 16 18 C 0.55 11.33 7.46 -10.98 -0.08 11.24 16 19 O -0.55 -12.41 15.84 5.56 0.09 -12.33 16 20 C -0.15 -2.66 4.92 -91.77 -0.45 -3.12 16 21 H 0.13 2.41 6.44 -51.93 -0.33 2.08 16 22 C -0.13 -2.04 9.56 -26.71 -0.26 -2.29 16 23 C -0.11 -1.68 5.56 -91.75 -0.51 -2.19 16 24 H 0.13 2.02 7.67 -51.93 -0.40 1.62 16 25 C -0.01 -0.16 5.61 -104.63 -0.59 -0.75 16 26 C -0.13 -1.66 9.29 -39.58 -0.37 -2.03 16 27 C -0.09 -0.99 10.04 -39.59 -0.40 -1.39 16 28 C -0.16 -1.91 10.03 -39.51 -0.40 -2.31 16 29 C 0.10 1.27 7.30 -39.42 -0.29 0.99 16 30 F -0.14 -1.95 17.27 2.25 0.04 -1.91 16 31 C -0.15 -2.03 9.72 -39.51 -0.38 -2.42 16 32 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 0.91 6.00 -51.93 -0.31 0.60 16 35 H 0.10 1.64 7.97 -51.93 -0.41 1.22 16 36 H 0.09 1.74 7.42 -51.93 -0.39 1.35 16 37 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.11 1.48 6.18 -51.93 -0.32 1.16 16 42 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.14 1.66 6.02 -52.49 -0.32 1.34 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -29.76 398.99 -10.60 -40.36 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.83 Total: 8.68 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -6.10 Total: -11.72 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.21 Total: -43.73 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.76 -10.60 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069492921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.418 kcal (2) G-P(sol) polarization free energy of solvation -29.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds