Wall clock time and date at job start Tue Mar 31 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47409 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47280 * 299.99979 * 3 2 1 6 6 H 1.48502 * 109.47076 * 59.99828 * 3 2 1 7 7 C 1.37878 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99750 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99850 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46790 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00065 * 270.00060 * 10 9 7 12 12 C 1.50698 * 109.46954 * 269.99904 * 11 10 9 13 13 C 1.38226 * 119.61870 * 95.00060 * 12 11 10 14 14 C 1.38631 * 119.16350 * 179.97438 * 13 12 11 15 15 C 1.38672 * 118.41953 * 0.02562 * 14 13 12 16 16 C 1.38183 * 119.16588 * 359.97438 * 15 14 13 17 17 N 1.31852 * 119.62070 * 274.72322 * 12 11 10 18 18 C 1.34778 * 120.00163 * 89.99883 * 10 9 7 19 19 O 1.21282 * 120.00431 * 179.97438 * 18 10 9 20 20 C 1.50707 * 119.99718 * 0.02562 * 18 10 9 21 21 H 1.09001 * 115.56098 * 34.30993 * 20 18 10 22 22 C 1.52997 * 117.49671 * 248.62130 * 20 18 10 23 23 C 1.53000 * 117.49697 * 179.97438 * 20 18 10 24 24 H 1.09000 * 117.51826 * 0.02562 * 23 20 18 25 25 C 1.50698 * 117.49774 * 214.97635 * 23 20 18 26 26 C 1.38271 * 119.98983 * 300.24395 * 25 23 20 27 27 C 1.38219 * 120.05279 * 180.25774 * 26 25 23 28 28 C 1.38227 * 120.02402 * 359.48356 * 27 26 25 29 29 C 1.38435 * 119.97416 * 0.26250 * 28 27 26 30 30 F 1.35097 * 120.02437 * 179.97438 * 29 28 27 31 31 C 1.38179 * 119.98470 * 119.98893 * 25 23 20 32 32 H 0.97001 * 120.00265 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.47319 * 60.00110 * 9 7 2 34 34 H 1.08997 * 109.47478 * 299.99543 * 9 7 2 35 35 H 1.08997 * 109.47449 * 29.99981 * 11 10 9 36 36 H 1.08999 * 109.47021 * 150.00123 * 11 10 9 37 37 H 1.07999 * 120.41772 * 359.95600 * 13 12 11 38 38 H 1.08007 * 120.78756 * 179.97438 * 14 13 12 39 39 H 1.07998 * 120.41913 * 179.97438 * 15 14 13 40 40 H 1.07992 * 119.61828 * 180.02562 * 16 15 14 41 41 H 1.09003 * 117.50213 * 145.02352 * 22 20 18 42 42 H 1.08998 * 117.49843 * 359.97438 * 22 20 18 43 43 H 1.08000 * 119.97479 * 0.02562 * 26 25 23 44 44 H 1.08002 * 119.99072 * 179.76964 * 27 26 25 45 45 H 1.07999 * 120.01289 * 180.23490 * 28 27 26 46 46 H 1.07993 * 120.01448 * 359.97438 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.6791 -4.1694 -1.2682 12 6 1.7624 -5.2836 -1.7031 13 6 0.7317 -5.0156 -2.5844 14 6 -0.1055 -6.0477 -2.9787 15 6 0.1258 -7.3165 -2.4691 16 6 1.1761 -7.5087 -1.5919 17 7 1.9560 -6.5040 -1.2430 18 6 2.6410 -4.1249 1.1677 19 8 3.4288 -5.0470 1.1678 20 6 2.1509 -3.5525 2.4729 21 1 1.1195 -3.1997 2.4739 22 6 3.1599 -2.7881 3.3322 23 6 2.6847 -4.1777 3.7632 24 1 3.3907 -5.0027 3.6686 25 6 1.7446 -4.2580 4.9383 26 6 1.1994 -3.1028 5.4675 27 6 0.3412 -3.1745 6.5486 28 6 0.0185 -4.4024 7.0952 29 6 0.5595 -5.5601 6.5629 30 9 0.2452 -6.7607 7.0966 31 6 1.4235 -5.4866 5.4830 32 1 -0.4850 0.8400 -0.0004 33 1 0.6247 -2.5571 -0.8896 34 1 0.6240 -2.5567 0.8903 35 1 2.6868 -3.3878 -2.0278 36 1 3.6885 -4.5594 -1.1378 37 1 0.5805 -4.0147 -2.9608 38 1 -0.9192 -5.8678 -3.6658 39 1 -0.5068 -8.1441 -2.7542 40 1 1.3632 -8.4938 -1.1910 41 1 2.7924 -1.9325 3.8988 42 1 4.1782 -2.6996 2.9539 43 1 1.4474 -2.1433 5.0382 44 1 -0.0811 -2.2712 6.9635 45 1 -0.6551 -4.4585 7.9375 46 1 1.8458 -6.3891 5.0667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069492921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:42 Heat of formation + Delta-G solvation = -5.047690 kcal Electronic energy + Delta-G solvation = -30533.501811 eV Core-core repulsion = 26302.798569 eV Total energy + Delta-G solvation = -4230.703242 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.91881 -41.49523 -40.88595 -39.92987 -37.40649 -36.65962 -34.65284 -33.39008 -32.77155 -32.03019 -31.13706 -29.40318 -28.05501 -25.40521 -24.90241 -24.60523 -24.23035 -23.64521 -22.72400 -21.51528 -19.83471 -18.72454 -18.57663 -17.95365 -17.63888 -17.26139 -17.18793 -17.11171 -16.90620 -16.60961 -16.52909 -16.31282 -15.78579 -15.48875 -14.97740 -14.70203 -14.50886 -14.27764 -14.20525 -14.12023 -13.89657 -13.62210 -13.54987 -13.25969 -13.06507 -13.04192 -12.74304 -12.66803 -12.62306 -12.50714 -12.07118 -11.94137 -11.69731 -11.57786 -11.41962 -10.83362 -10.75838 -10.51323 -10.35489 -9.95985 -9.86971 -9.58265 -9.45851 -8.15410 -6.28700 0.10344 0.15217 0.21723 0.40412 1.43661 1.48210 1.57681 1.66850 2.20115 2.46239 2.53262 2.98137 3.01874 3.15592 3.23926 3.40310 3.53915 3.78542 3.80151 3.84423 3.89823 4.02315 4.04296 4.11215 4.17016 4.23423 4.25286 4.26308 4.45684 4.51796 4.60649 4.75917 4.78364 4.84191 4.87199 4.89181 5.01106 5.07053 5.12231 5.14461 5.21920 5.24738 5.29464 5.37464 5.56955 5.68951 5.80796 5.84132 5.92183 6.10261 6.57183 6.84733 7.13892 7.33588 7.45823 8.90763 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.006330 B = 0.004068 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4422.555462 B = 6881.700650 C =10067.417223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.028 3.972 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.535 4.535 8 H 0.054 0.946 9 C 0.258 3.742 10 N -0.589 5.589 11 C 0.168 3.832 12 C 0.094 3.906 13 C -0.166 4.166 14 C -0.077 4.077 15 C -0.165 4.165 16 C 0.077 3.923 17 N -0.500 5.500 18 C 0.539 3.461 19 O -0.577 6.577 20 C -0.169 4.169 21 H 0.116 0.884 22 C -0.119 4.119 23 C -0.087 4.087 24 H 0.114 0.886 25 C -0.028 4.028 26 C -0.133 4.133 27 C -0.082 4.082 28 C -0.155 4.155 29 C 0.083 3.917 30 F -0.148 7.148 31 C -0.159 4.159 32 H 0.267 0.733 33 H 0.021 0.979 34 H 0.025 0.975 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.166 0.834 39 H 0.171 0.829 40 H 0.171 0.829 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.141 0.859 44 H 0.165 0.835 45 H 0.159 0.841 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 -7.793 5.004 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.137 3.863 10 N -0.319 5.319 11 C 0.044 3.956 12 C -0.044 4.044 13 C -0.187 4.187 14 C -0.103 4.103 15 C -0.185 4.185 16 C -0.081 4.081 17 N -0.209 5.209 18 C 0.328 3.672 19 O -0.458 6.458 20 C -0.190 4.190 21 H 0.134 0.866 22 C -0.156 4.156 23 C -0.105 4.105 24 H 0.132 0.868 25 C -0.028 4.028 26 C -0.151 4.151 27 C -0.099 4.099 28 C -0.174 4.174 29 C 0.064 3.936 30 F -0.126 7.126 31 C -0.177 4.177 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.043 0.957 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.157 0.843 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.189 0.811 41 H 0.144 0.856 42 H 0.117 0.883 43 H 0.159 0.841 44 H 0.182 0.818 45 H 0.176 0.824 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.497 -8.324 5.574 10.129 hybrid contribution -0.415 0.759 -0.842 1.207 sum -1.912 -7.565 4.732 9.126 Atomic orbital electron populations 1.70019 1.07171 1.27973 1.50762 1.25542 0.95405 1.01902 0.94433 0.85587 0.78982 0.79812 0.77776 1.19536 1.20792 1.20256 1.21610 0.93242 0.91143 1.51388 0.92797 1.19093 0.87328 0.82732 0.97138 1.48040 1.45405 1.34060 1.04347 1.20142 0.96164 0.92747 0.86528 1.21652 0.96071 0.92522 0.94152 1.22218 0.95930 1.01593 0.98931 1.21985 0.98200 0.92199 0.97945 1.22517 0.98998 0.98982 0.98006 1.23263 0.91691 0.98151 0.94978 1.67539 1.29522 1.00514 1.23369 1.19873 0.80275 0.81582 0.85426 1.90603 1.36866 1.30430 1.87909 1.22159 1.01205 1.06589 0.89038 0.86569 1.23089 0.98423 0.94515 0.99575 1.21017 1.00062 0.98522 0.90944 0.86799 1.18955 0.96239 0.92986 0.94638 1.21441 0.97816 0.98614 0.97201 1.21343 0.95792 0.98189 0.94601 1.21441 1.02339 0.90967 1.02638 1.17821 0.99345 0.81069 0.95412 1.91467 1.91738 1.44033 1.85411 1.21016 1.00477 0.99019 0.97226 0.92428 0.96095 0.95743 0.88130 0.90641 0.84305 0.81631 0.81176 0.81146 0.85639 0.88277 0.84118 0.81797 0.82367 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.57 13.29 21.45 0.28 -48.28 16 2 C 0.03 1.38 5.46 84.66 0.46 1.84 16 3 Si 0.95 40.03 29.54 68.60 2.03 42.05 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -26.67 9.39 25.60 0.24 -26.43 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.72 16 9 C 0.26 12.11 4.99 85.63 0.43 12.54 16 10 N -0.59 -25.54 2.44 -830.51 -2.03 -27.57 16 11 C 0.17 6.63 5.71 85.63 0.49 7.12 16 12 C 0.09 3.44 6.36 42.55 0.27 3.71 16 13 C -0.17 -5.10 9.72 22.36 0.22 -4.88 16 14 C -0.08 -1.84 10.18 22.47 0.23 -1.61 16 15 C -0.17 -3.68 10.11 22.36 0.23 -3.45 16 16 C 0.08 2.17 11.18 84.67 0.95 3.11 16 17 N -0.50 -18.56 10.27 -183.89 -1.89 -20.45 16 18 C 0.54 23.52 7.46 87.66 0.65 24.17 16 19 O -0.58 -27.30 15.84 -3.04 -0.05 -27.34 16 20 C -0.17 -6.38 4.92 -11.54 -0.06 -6.44 16 21 H 0.12 4.61 6.44 -2.39 -0.02 4.60 16 22 C -0.12 -3.77 9.56 30.61 0.29 -3.48 16 23 C -0.09 -2.78 5.56 -11.52 -0.06 -2.84 16 24 H 0.11 3.87 7.67 -2.39 -0.02 3.85 16 25 C -0.03 -0.79 5.61 -19.87 -0.11 -0.90 16 26 C -0.13 -3.25 9.29 22.27 0.21 -3.04 16 27 C -0.08 -1.63 10.04 22.26 0.22 -1.40 16 28 C -0.16 -3.22 10.03 22.31 0.22 -3.00 16 29 C 0.08 2.11 7.30 22.38 0.16 2.27 16 30 F -0.15 -3.89 17.27 44.97 0.78 -3.11 16 31 C -0.16 -4.40 9.72 22.31 0.22 -4.18 16 32 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 33 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 34 H 0.02 1.22 6.00 -2.39 -0.01 1.21 16 35 H 0.10 3.69 7.97 -2.39 -0.02 3.67 16 36 H 0.08 3.13 7.42 -2.39 -0.02 3.11 16 37 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 38 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 39 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 40 H 0.17 3.84 8.06 -2.91 -0.02 3.81 16 41 H 0.13 3.42 6.18 -2.39 -0.01 3.40 16 42 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.14 3.23 6.02 -2.91 -0.02 3.21 16 44 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 46 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -65.65 398.99 5.39 -60.26 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 1.01 Total: 31.36 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.26 Total: -6.91 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -3.63 Total: -96.30 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.34 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.05 kcal Total: -65.65 5.39 -60.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069492921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.209 kcal (2) G-P(sol) polarization free energy of solvation -65.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds