Wall clock time and date at job start Tue Mar 31 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47067 * 240.00173 * 3 2 1 5 5 H 1.48501 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46936 * 120.00001 * 3 2 1 7 7 C 1.37879 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00087 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99948 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99956 * 270.00001 * 10 9 7 12 12 C 1.50702 * 109.46805 * 270.00218 * 11 10 9 13 13 C 1.38226 * 119.62361 * 95.00070 * 12 11 10 14 14 C 1.38620 * 119.16453 * 179.97438 * 13 12 11 15 15 C 1.38678 * 118.42192 * 359.97438 * 14 13 12 16 16 C 1.38184 * 119.15828 * 0.02562 * 15 14 13 17 17 N 1.31855 * 119.61569 * 274.72459 * 12 11 10 18 18 C 1.34778 * 119.99860 * 89.99529 * 10 9 7 19 19 O 1.21279 * 119.99711 * 179.97438 * 18 10 9 20 20 C 1.50701 * 119.99999 * 0.02562 * 18 10 9 21 21 H 1.09002 * 115.55088 * 325.57701 * 20 18 10 22 22 C 1.53001 * 117.51956 * 111.28092 * 20 18 10 23 23 C 1.52999 * 60.00190 * 107.47765 * 22 20 18 24 24 H 1.09004 * 117.49681 * 107.48417 * 23 22 20 25 25 C 1.50697 * 117.50163 * 252.51499 * 23 22 20 26 26 C 1.38271 * 119.98672 * 188.62307 * 25 23 22 27 27 C 1.38224 * 120.04776 * 179.97438 * 26 25 23 28 28 C 1.38218 * 120.02727 * 0.02562 * 27 26 25 29 29 C 1.38436 * 119.97797 * 359.97438 * 28 27 26 30 30 F 1.35101 * 120.03094 * 180.02562 * 29 28 27 31 31 C 1.38175 * 119.98907 * 8.34005 * 25 23 22 32 32 H 0.96993 * 119.99791 * 0.02562 * 1 2 3 33 33 H 1.08999 * 109.46823 * 59.99559 * 9 7 2 34 34 H 1.08997 * 109.46824 * 300.00033 * 9 7 2 35 35 H 1.08999 * 109.46905 * 29.99906 * 11 10 9 36 36 H 1.09000 * 109.47291 * 150.00105 * 11 10 9 37 37 H 1.08004 * 120.41435 * 359.97438 * 13 12 11 38 38 H 1.07997 * 120.79375 * 180.02562 * 14 13 12 39 39 H 1.07996 * 120.42278 * 180.02562 * 15 14 13 40 40 H 1.08000 * 119.61368 * 180.02562 * 16 15 14 41 41 H 1.09001 * 117.49733 * 214.97195 * 22 20 18 42 42 H 1.08995 * 117.49577 * 359.97438 * 22 20 18 43 43 H 1.07999 * 119.97380 * 359.97306 * 26 25 23 44 44 H 1.08001 * 119.98458 * 180.02562 * 27 26 25 45 45 H 1.08007 * 120.01074 * 179.97438 * 28 27 26 46 46 H 1.08011 * 120.00949 * 0.02562 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 2.6791 -4.1684 -1.2719 12 6 1.7623 -5.2821 -1.7079 13 6 0.7316 -5.0134 -2.5889 14 6 -0.1057 -6.0451 -2.9841 15 6 0.1263 -7.3146 -2.4764 16 6 1.1766 -7.5074 -1.5994 17 7 1.9559 -6.5029 -1.2488 18 6 2.6410 -4.1259 1.1641 19 8 3.4288 -5.0480 1.1632 20 6 2.1510 -3.5546 2.4697 21 1 1.9639 -2.4808 2.4722 22 6 1.2377 -4.4330 3.3272 23 6 2.6837 -4.1820 3.7595 24 1 2.8470 -3.5208 4.6106 25 6 3.6578 -5.3242 3.6270 26 6 4.9273 -5.2156 4.1641 27 6 5.8216 -6.2626 4.0438 28 6 5.4479 -7.4193 3.3858 29 6 4.1772 -7.5291 2.8476 30 9 3.8106 -8.6594 2.2047 31 6 3.2801 -6.4818 2.9739 32 1 -0.4849 0.8400 -0.0004 33 1 0.6247 -2.5563 -0.8919 34 1 0.6241 -2.5575 0.8880 35 1 2.6868 -3.3860 -2.0308 36 1 3.6885 -4.5585 -1.1420 37 1 0.5806 -4.0121 -2.9647 38 1 -0.9188 -5.8647 -3.6715 39 1 -0.5058 -8.1420 -2.7629 40 1 1.3642 -8.4932 -1.1999 41 1 0.4496 -3.9369 3.8938 42 1 0.9907 -5.4241 2.9468 43 1 5.2203 -4.3120 4.6781 44 1 6.8128 -6.1769 4.4641 45 1 6.1471 -8.2371 3.2916 46 1 2.2870 -6.5679 2.5581 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069492923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:47 Heat of formation + Delta-G solvation = 18.978370 kcal Electronic energy + Delta-G solvation = -31729.260117 eV Core-core repulsion = 27499.598724 eV Total energy + Delta-G solvation = -4229.661394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.43925 -40.22185 -39.72007 -38.18895 -36.03578 -34.92969 -32.85645 -32.17408 -31.42182 -30.34087 -30.08223 -27.70923 -26.45290 -23.94268 -23.57467 -23.29796 -22.67759 -22.15880 -21.45301 -20.36763 -18.31044 -17.32025 -16.83639 -16.39849 -16.15888 -15.98682 -15.83710 -15.64111 -15.34582 -15.21155 -15.13146 -14.51361 -14.37508 -13.98028 -13.64807 -13.54879 -13.20087 -13.00414 -12.77901 -12.58786 -12.46225 -12.29161 -12.04279 -11.76782 -11.66239 -11.47027 -11.31641 -11.15530 -10.97932 -10.79324 -10.71236 -10.37185 -10.18178 -10.07549 -9.84331 -9.64379 -9.21744 -9.10451 -8.77480 -8.60183 -8.23486 -7.93429 -7.70327 -6.22439 -4.30442 1.30780 1.52720 1.53364 1.67183 3.20389 3.21464 3.26570 3.30311 3.72904 3.94312 4.24222 4.29819 4.39111 4.61931 4.65539 4.86861 4.99149 5.02495 5.04921 5.10244 5.17300 5.26125 5.28268 5.30531 5.36933 5.39968 5.60347 5.69657 5.70642 5.80160 5.87824 5.98277 6.02850 6.11242 6.24443 6.26171 6.36670 6.40219 6.41713 6.45956 6.55336 6.65700 6.71569 6.89837 6.93356 7.15776 7.30453 7.51429 7.72610 8.01773 8.29399 8.37271 8.76582 9.07518 9.38313 10.83803 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.007650 B = 0.004712 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3659.148504 B = 5941.282550 C = 8725.726903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.239 3.761 10 N -0.588 5.588 11 C 0.169 3.831 12 C 0.121 3.879 13 C -0.156 4.156 14 C -0.081 4.081 15 C -0.182 4.182 16 C 0.092 3.908 17 N -0.456 5.456 18 C 0.541 3.459 19 O -0.535 6.535 20 C -0.157 4.157 21 H 0.143 0.857 22 C -0.151 4.151 23 C -0.099 4.099 24 H 0.120 0.880 25 C -0.007 4.007 26 C -0.126 4.126 27 C -0.105 4.105 28 C -0.162 4.162 29 C 0.090 3.910 30 F -0.148 7.148 31 C -0.075 4.075 32 H 0.266 0.734 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -11.335 2.775 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.120 3.880 10 N -0.318 5.318 11 C 0.045 3.955 12 C -0.019 4.019 13 C -0.177 4.177 14 C -0.107 4.107 15 C -0.202 4.202 16 C -0.065 4.065 17 N -0.165 5.165 18 C 0.329 3.671 19 O -0.413 6.413 20 C -0.178 4.178 21 H 0.160 0.840 22 C -0.189 4.189 23 C -0.117 4.117 24 H 0.138 0.862 25 C -0.007 4.007 26 C -0.144 4.144 27 C -0.123 4.123 28 C -0.181 4.181 29 C 0.071 3.929 30 F -0.126 7.126 31 C -0.094 4.094 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.124 0.876 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.894 -11.852 3.307 12.640 hybrid contribution -0.619 1.152 -1.042 1.672 sum 2.275 -10.700 2.265 11.171 Atomic orbital electron populations 1.69915 1.05993 1.27412 1.49572 1.24931 0.94811 0.99209 0.94705 0.86594 0.79573 0.82639 0.78902 1.20119 1.21190 1.20064 1.21486 0.93633 0.90438 1.52206 0.92047 1.19420 0.87498 0.82499 0.98614 1.48083 1.45789 1.34506 1.03429 1.20092 0.96371 0.91852 0.87192 1.21910 0.94853 0.92816 0.92279 1.22113 0.95948 1.00498 0.99115 1.21532 0.98258 0.92761 0.98143 1.22086 1.00057 0.97943 1.00156 1.22763 0.91289 0.98086 0.94396 1.67661 1.27347 0.99571 1.21932 1.19519 0.80968 0.82049 0.84604 1.90711 1.35057 1.28805 1.86774 1.22449 1.04204 1.01514 0.89621 0.83970 1.23052 0.92787 1.00884 1.02152 1.21089 0.94007 0.98429 0.98204 0.86213 1.18673 0.93720 0.92572 0.95743 1.20831 0.93134 0.98854 1.01617 1.20726 0.99231 0.92897 0.99443 1.20925 0.95173 0.99817 1.02181 1.17510 0.94341 0.83553 0.97488 1.91444 1.92143 1.49244 1.79812 1.20671 0.99786 0.91726 0.97185 0.92471 0.94896 0.94275 0.88887 0.89199 0.84559 0.85201 0.85405 0.83382 0.87557 0.88561 0.86121 0.85922 0.85884 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.29 55.43 0.74 -22.88 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.37 9.08 -34.44 -0.31 -13.69 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.24 5.44 4.80 -5.19 -0.02 5.42 16 10 N -0.59 -12.06 2.44 -176.43 -0.43 -12.49 16 11 C 0.17 3.18 5.71 -5.19 -0.03 3.15 16 12 C 0.12 2.13 6.36 -82.59 -0.53 1.60 16 13 C -0.16 -2.41 9.72 -39.44 -0.38 -2.80 16 14 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16 15 C -0.18 -2.30 10.11 -39.44 -0.40 -2.69 16 16 C 0.09 1.37 11.18 -17.55 -0.20 1.17 16 17 N -0.46 -8.23 10.27 -9.47 -0.10 -8.33 16 18 C 0.54 10.94 7.32 -10.98 -0.08 10.86 16 19 O -0.53 -11.38 11.31 5.56 0.06 -11.32 16 20 C -0.16 -2.81 4.80 -91.77 -0.44 -3.25 16 21 H 0.14 2.74 7.00 -51.93 -0.36 2.37 16 22 C -0.15 -2.26 9.58 -26.73 -0.26 -2.52 16 23 C -0.10 -1.49 6.04 -91.77 -0.55 -2.04 16 24 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 25 C -0.01 -0.11 4.35 -104.63 -0.46 -0.56 16 26 C -0.13 -1.81 9.74 -39.57 -0.39 -2.20 16 27 C -0.10 -1.41 10.04 -39.59 -0.40 -1.81 16 28 C -0.16 -2.37 10.03 -39.52 -0.40 -2.77 16 29 C 0.09 1.52 7.30 -39.42 -0.29 1.23 16 30 F -0.15 -2.57 17.27 2.25 0.04 -2.53 16 31 C -0.07 -1.28 6.17 -39.51 -0.24 -1.53 16 32 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 0.93 6.64 -51.93 -0.35 0.59 16 35 H 0.09 1.64 7.97 -51.93 -0.41 1.23 16 36 H 0.09 1.76 7.42 -51.93 -0.39 1.38 16 37 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.10 1.48 6.17 -51.93 -0.32 1.16 16 43 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 46 H 0.12 2.21 5.80 -52.48 -0.30 1.91 16 LS Contribution 391.30 15.07 5.90 5.90 Total: -1.00 -29.50 391.30 -10.58 -40.08 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.90 Total: 8.98 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -5.87 Total: -12.29 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.21 Total: -43.70 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.06 Total: -11.32 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.50 -10.58 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069492923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.056 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds