Wall clock time and date at job start Tue Mar 31 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35895 * 116.99796 * 2 1 4 4 C 1.38758 * 120.06325 * 0.24925 * 3 2 1 5 5 C 1.38116 * 119.94799 * 180.31909 * 4 3 2 6 6 C 1.38294 * 120.05623 * 359.68646 * 5 4 3 7 7 C 1.38245 * 120.10736 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05708 * 0.02977 * 7 6 5 9 9 C 1.50707 * 120.02485 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47176 * 359.38943 * 9 8 7 11 11 C 1.53002 * 109.46971 * 239.39077 * 9 8 7 12 12 N 1.46497 * 109.47032 * 119.38960 * 9 8 7 13 13 C 1.34778 * 119.99864 * 181.05819 * 12 9 8 14 14 O 1.21581 * 119.99945 * 359.73040 * 13 12 9 15 15 N 1.34776 * 119.99715 * 179.72314 * 13 12 9 16 16 C 1.39246 * 119.99936 * 186.29643 * 15 13 12 17 17 C 1.39477 * 119.83381 * 216.34077 * 16 15 13 18 18 C 1.36382 * 120.16748 * 179.75924 * 17 16 15 19 19 C 1.40868 * 119.82416 * 0.53355 * 18 17 16 20 20 C 1.41154 * 120.16174 * 179.69315 * 19 18 17 21 21 H 1.08003 * 120.00141 * 160.13006 * 20 19 18 22 22 C 1.39896 * 120.00185 * 340.13446 * 20 19 18 23 23 N 1.30878 * 120.00020 * 328.80525 * 22 20 19 24 24 Si 1.86803 * 120.00161 * 148.80914 * 22 20 19 25 25 H 1.48491 * 109.47269 * 94.98906 * 24 22 20 26 26 H 1.48500 * 109.46954 * 214.99047 * 24 22 20 27 27 H 1.48506 * 109.46743 * 334.98551 * 24 22 20 28 28 C 1.40868 * 119.67812 * 359.72501 * 19 18 17 29 29 C 1.36378 * 119.82365 * 359.97438 * 28 19 18 30 30 H 1.08999 * 109.46812 * 60.00091 * 1 2 3 31 31 H 1.08998 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46994 * 300.00240 * 1 2 3 33 33 H 1.07997 * 120.02067 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.97322 * 179.70326 * 5 4 3 35 35 H 1.07993 * 119.94656 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.96898 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.46961 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.47345 * 300.00113 * 10 9 8 39 39 H 1.08997 * 109.47598 * 60.00200 * 10 9 8 40 40 H 1.09009 * 109.46942 * 300.00022 * 11 9 8 41 41 H 1.08994 * 109.47456 * 59.99765 * 11 9 8 42 42 H 1.09003 * 109.46965 * 180.02562 * 11 9 8 43 43 H 0.97000 * 120.00225 * 0.79079 * 12 9 8 44 44 H 0.96997 * 120.00513 * 6.30525 * 15 13 12 45 45 H 1.07997 * 119.91750 * 0.02562 * 17 16 15 46 46 H 1.07991 * 120.08993 * 180.25717 * 18 17 16 47 47 H 0.96994 * 120.00451 * 179.97438 * 23 22 20 48 48 H 1.07995 * 120.08884 * 179.97438 * 28 19 18 49 49 H 1.07998 * 119.91355 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3754 0.0052 5 6 1.9209 3.6048 -0.0015 6 6 3.3020 3.6758 -0.0068 7 6 4.0560 2.5171 -0.0060 8 6 3.4311 1.2848 -0.0005 9 6 4.2538 0.0221 -0.0002 10 6 5.7406 0.3821 -0.0219 11 6 3.9122 -0.8094 -1.2383 12 7 3.9568 -0.7539 1.2064 13 6 4.5953 -1.9191 1.4323 14 8 5.4141 -2.3287 0.6323 15 7 4.3261 -2.6302 2.5451 16 6 5.0765 -3.7642 2.8452 17 6 4.4599 -4.8688 3.4326 18 6 5.1872 -5.9848 3.7249 19 6 6.5669 -6.0158 3.4422 20 6 7.3279 -7.1647 3.7477 21 1 8.2781 -7.3283 3.2610 22 6 6.8512 -8.0917 4.6807 23 7 6.1048 -7.6913 5.6784 24 14 7.2802 -9.9011 4.5028 25 1 8.4719 -10.2112 5.3326 26 1 6.1331 -10.7285 4.9551 27 1 7.5764 -10.2018 3.0789 28 6 7.1837 -4.8942 2.8538 29 6 6.4420 -3.7877 2.5617 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2129 2.3204 0.0097 34 1 1.3341 4.5114 -0.0022 35 1 3.7923 4.6380 -0.0116 36 1 5.1345 2.5751 -0.0097 37 1 6.3356 -0.5312 -0.0213 38 1 5.9616 0.9594 -0.9196 39 1 5.9841 0.9744 0.8600 40 1 2.8528 -1.0658 -1.2228 41 1 4.1331 -0.2320 -2.1360 42 1 4.5068 -1.7229 -1.2379 43 1 3.3035 -0.4272 1.8446 44 1 3.6097 -2.3522 3.1370 45 1 3.4029 -4.8419 3.6526 46 1 4.7077 -6.8409 4.1759 47 1 5.7740 -8.3340 6.3252 48 1 8.2410 -4.9106 2.6347 49 1 6.9132 -2.9272 2.1102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069557510.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:07 Heat of formation + Delta-G solvation = -11.993939 kcal Electronic energy + Delta-G solvation = -31084.120373 eV Core-core repulsion = 26976.576224 eV Total energy + Delta-G solvation = -4107.544149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.94742 -39.68181 -37.95036 -37.39436 -35.88322 -34.20799 -33.05833 -31.74369 -30.44028 -29.85018 -29.41309 -28.60398 -27.72665 -26.92161 -24.90105 -23.60512 -22.17571 -21.78334 -20.93312 -20.14521 -19.47890 -18.50346 -17.78720 -17.22063 -16.79657 -16.26892 -16.00700 -15.69106 -15.18674 -14.99519 -14.73008 -14.52666 -14.31677 -13.95184 -13.89369 -13.46920 -13.25340 -12.99896 -12.69803 -12.62046 -12.36016 -12.06313 -11.99047 -11.95855 -11.82859 -11.75664 -11.63099 -11.41176 -11.32082 -11.08661 -11.03036 -10.88126 -10.67901 -10.45723 -10.01811 -9.60550 -9.34509 -9.23254 -9.05463 -8.70866 -8.58587 -8.41574 -7.45316 -7.01975 -6.79097 -4.17874 0.97974 1.15190 2.74573 3.00673 3.08152 3.09408 3.16557 3.18568 3.27266 3.58230 3.87529 3.94755 4.34771 4.52705 4.60825 4.68378 4.79644 4.81116 4.85888 5.01628 5.04399 5.21915 5.22837 5.31331 5.38864 5.62008 5.77089 5.78285 5.86739 5.91444 5.98860 6.12751 6.18900 6.26118 6.28124 6.46255 6.47333 6.50747 6.63692 6.87441 6.92734 6.98743 7.08758 7.12163 7.21455 7.39393 7.46243 7.67793 8.00219 8.07752 8.12717 8.34831 8.64679 8.67474 8.93010 9.01835 9.30769 10.10295 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.023239 B = 0.002071 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.593738 B =13517.796103 C =14078.459645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.141 3.859 4 C -0.213 4.213 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.069 4.069 8 C -0.121 4.121 9 C 0.250 3.750 10 C -0.168 4.168 11 C -0.162 4.162 12 N -0.737 5.737 13 C 0.700 3.300 14 O -0.577 6.577 15 N -0.669 5.669 16 C 0.008 3.992 17 C -0.108 4.108 18 C -0.169 4.169 19 C 0.108 3.892 20 C -0.465 4.465 21 H 0.080 0.920 22 C 0.086 3.914 23 N -0.774 5.774 24 Si 0.896 3.104 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.258 1.258 28 C -0.222 4.222 29 C -0.067 4.067 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.389 0.611 44 H 0.388 0.612 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.282 0.718 48 H 0.093 0.907 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.973 19.979 -8.491 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.214 6.214 3 C 0.095 3.905 4 C -0.231 4.231 5 C -0.098 4.098 6 C -0.178 4.178 7 C -0.087 4.087 8 C -0.123 4.123 9 C 0.163 3.837 10 C -0.226 4.226 11 C -0.220 4.220 12 N -0.392 5.392 13 C 0.401 3.599 14 O -0.455 6.455 15 N -0.315 5.315 16 C -0.084 4.084 17 C -0.128 4.128 18 C -0.189 4.189 19 C 0.105 3.895 20 C -0.493 4.493 21 H 0.098 0.902 22 C -0.134 4.134 23 N -0.398 5.398 24 Si 0.719 3.281 25 H -0.196 1.196 26 H -0.200 1.200 27 H -0.182 1.182 28 C -0.242 4.242 29 C -0.088 4.088 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.222 0.778 44 H 0.221 0.779 45 H 0.105 0.895 46 H 0.128 0.872 47 H 0.092 0.908 48 H 0.111 0.889 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.241 19.341 -9.013 24.118 hybrid contribution -1.022 -0.248 0.685 1.255 sum -12.262 19.093 -8.328 24.171 Atomic orbital electron populations 1.23089 0.78743 1.04146 1.01100 1.86251 1.20933 1.26146 1.88088 1.18909 0.91646 0.84508 0.95441 1.21232 1.00014 0.92362 1.09516 1.20958 0.94748 0.96920 0.97134 1.21071 0.93883 0.98412 1.04447 1.21114 1.00652 0.90697 0.96271 1.19386 0.90375 0.95412 1.07077 1.18587 0.93192 0.86516 0.85380 1.22374 0.95608 1.03606 1.01017 1.22266 1.02985 1.01382 0.95317 1.45190 1.46387 1.22509 1.25161 1.15942 0.81780 0.80184 0.81996 1.90837 1.37659 1.70505 1.46467 1.42124 1.37526 1.28046 1.23797 1.16842 0.90482 0.87593 1.13528 1.20151 0.97205 0.93057 1.02390 1.20660 0.94104 0.97408 1.06743 1.17577 0.91773 0.91243 0.88866 1.19487 1.05727 1.03893 1.20197 0.90187 1.25927 0.93175 1.01230 0.93098 1.69946 1.25688 1.36847 1.07275 0.86512 0.78948 0.82349 0.80254 1.19555 1.19972 1.18158 1.20562 0.97944 0.94426 1.11273 1.20190 0.91775 0.97939 0.98855 0.92789 0.88125 0.92708 0.85487 0.85926 0.85808 0.84566 0.89169 0.92121 0.92685 0.91600 0.92835 0.89762 0.77751 0.77924 0.89466 0.87214 0.90767 0.88891 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.12 7.46 -19.41 -0.14 -3.26 16 3 C 0.14 1.44 6.20 -39.21 -0.24 1.20 16 4 C -0.21 -1.78 9.04 -39.43 -0.36 -2.14 16 5 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 6 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16 7 C -0.07 -0.65 8.97 -39.61 -0.36 -1.00 16 8 C -0.12 -1.33 4.81 -104.47 -0.50 -1.83 16 9 C 0.25 3.25 0.67 -132.97 -0.09 3.16 16 10 C -0.17 -2.18 7.04 37.16 0.26 -1.92 16 11 C -0.16 -2.26 8.19 37.16 0.30 -1.96 16 12 N -0.74 -10.44 4.63 -53.50 -0.25 -10.69 16 13 C 0.70 12.85 7.67 -86.92 -0.67 12.19 16 14 O -0.58 -12.56 10.47 5.29 0.06 -12.51 16 15 N -0.67 -12.48 5.31 -14.10 -0.07 -12.56 16 16 C 0.01 0.19 6.22 -83.57 -0.52 -0.33 16 17 C -0.11 -2.54 9.90 -39.79 -0.39 -2.93 16 18 C -0.17 -4.44 8.73 -39.26 -0.34 -4.78 16 19 C 0.11 2.96 5.60 -106.80 -0.60 2.36 16 20 C -0.46 -12.55 8.96 -37.86 -0.34 -12.89 16 21 H 0.08 2.09 8.01 -52.48 -0.42 1.67 16 22 C 0.09 2.18 4.83 -17.34 -0.08 2.09 16 23 N -0.77 -19.87 11.54 55.55 0.64 -19.23 16 24 Si 0.90 18.60 29.66 -169.99 -5.04 13.56 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 28 C -0.22 -5.79 9.74 -39.26 -0.38 -6.17 16 29 C -0.07 -1.66 8.57 -39.79 -0.34 -2.01 16 30 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 33 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 34 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.14 1.14 5.90 -52.48 -0.31 0.83 16 37 H 0.09 1.47 6.10 -51.93 -0.32 1.15 16 38 H 0.06 0.65 7.54 -51.93 -0.39 0.26 16 39 H 0.05 0.66 7.48 -51.93 -0.39 0.28 16 40 H 0.07 0.92 6.07 -51.92 -0.32 0.61 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.44 6.23 -51.93 -0.32 1.11 16 43 H 0.39 4.81 8.16 -40.82 -0.33 4.47 16 44 H 0.39 5.94 8.84 -40.82 -0.36 5.58 16 45 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.11 2.92 6.33 -52.49 -0.33 2.59 16 47 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 48 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 49 H 0.10 2.38 6.66 -52.49 -0.35 2.03 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -31.26 391.18 -10.01 -41.27 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -6.64 Total: 16.02 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -4.45 Total: -18.49 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.32 Total: -42.48 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.09 Total: -15.77 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.04 Total: 13.56 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.26 -10.01 -41.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069557510.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.271 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds