Wall clock time and date at job start Tue Mar 31 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34708 * 116.99930 * 2 1 4 4 O 1.21477 * 120.00037 * 359.97438 * 3 2 1 5 5 C 1.47732 * 120.00201 * 180.02562 * 3 2 1 6 6 C 1.39758 * 120.07904 * 359.97438 * 5 3 2 7 7 C 1.38041 * 120.14153 * 180.02562 * 6 5 3 8 8 C 1.38108 * 120.30533 * 359.97438 * 7 6 5 9 9 C 1.39669 * 120.15084 * 0.02562 * 8 7 6 10 10 C 1.47862 * 120.06939 * 180.27555 * 9 8 7 11 11 O 1.21560 * 120.00039 * 131.47269 * 10 9 8 12 12 N 1.34773 * 120.00046 * 311.47004 * 10 9 8 13 13 C 1.46501 * 120.00205 * 5.04180 * 12 10 9 14 14 C 1.50696 * 109.46973 * 95.73319 * 13 12 10 15 15 H 1.08005 * 120.00504 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00316 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00219 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99464 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47133 * 89.99896 * 18 16 14 20 20 H 1.48500 * 109.46736 * 209.99405 * 18 16 14 21 21 H 1.48502 * 109.47323 * 329.99538 * 18 16 14 22 22 C 1.46506 * 120.00210 * 185.04146 * 12 10 9 23 23 C 1.50701 * 109.46787 * 89.99919 * 22 12 10 24 24 C 1.38229 * 119.61744 * 94.73201 * 23 22 12 25 25 C 1.38624 * 119.16159 * 179.75262 * 24 23 22 26 26 C 1.38676 * 118.41981 * 0.50467 * 25 24 23 27 27 C 1.38181 * 119.16381 * 359.73676 * 26 25 24 28 28 N 1.31858 * 119.62260 * 275.00022 * 23 22 12 29 29 C 1.39326 * 119.86265 * 0.02562 * 9 8 7 30 30 H 1.09007 * 109.46862 * 60.00433 * 1 2 3 31 31 H 1.09001 * 109.47162 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47463 * 300.00510 * 1 2 3 33 33 H 1.08000 * 119.92855 * 0.03916 * 6 5 3 34 34 H 1.08008 * 119.85132 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.92648 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47603 * 215.73338 * 13 12 10 37 37 H 1.08999 * 109.46854 * 335.73658 * 13 12 10 38 38 H 0.97002 * 119.99757 * 180.02562 * 17 16 14 39 39 H 1.08988 * 109.47498 * 209.99868 * 22 12 10 40 40 H 1.08998 * 109.46809 * 330.00604 * 22 12 10 41 41 H 1.08002 * 120.41836 * 359.97438 * 24 23 22 42 42 H 1.08001 * 120.79380 * 180.26677 * 25 24 23 43 43 H 1.08001 * 120.41529 * 179.71228 * 26 25 24 44 44 H 1.08002 * 119.61416 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.15234 * 179.97438 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3017 0.1066 -0.0006 7 6 5.6803 0.1774 -0.0006 8 6 6.3151 1.4040 -0.0011 9 6 5.5650 2.5821 -0.0011 10 6 6.2465 3.8943 -0.0078 11 8 5.9045 4.7528 -0.7975 12 7 7.2469 4.1385 0.8616 13 6 7.7335 3.0697 1.7375 14 6 8.9399 2.4181 1.1123 15 1 9.3077 2.7656 0.1581 16 6 9.5742 1.3782 1.7583 17 7 10.6273 0.8099 1.2129 18 14 8.9376 0.7767 3.4083 19 1 7.9359 -0.2977 3.1905 20 1 10.0681 0.2442 4.2106 21 1 8.3029 1.9053 4.1354 22 6 7.8479 5.4729 0.9309 23 6 7.1039 6.3069 1.9419 24 6 7.5700 6.3822 3.2410 25 6 6.8812 7.1562 4.1619 26 6 5.7383 7.8203 3.7425 27 6 5.3300 7.6936 2.4285 28 7 6.0130 6.9522 1.5783 29 6 4.1732 2.5184 0.0000 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 3.8116 -0.8557 -0.0008 34 1 6.2652 -0.7305 -0.0002 35 1 7.3940 1.4522 -0.0015 36 1 8.0080 3.4896 2.7052 37 1 6.9484 2.3259 1.8736 38 1 11.0733 0.0781 1.6673 39 1 8.8924 5.3859 1.2297 40 1 7.7883 5.9494 -0.0476 41 1 8.4615 5.8475 3.5340 42 1 7.2243 7.2372 5.1828 43 1 5.1743 8.4284 4.4343 44 1 4.4407 8.2073 2.0941 45 1 3.5886 3.4265 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069559984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:09 Heat of formation + Delta-G solvation = -43.890185 kcal Electronic energy + Delta-G solvation = -31096.289795 eV Core-core repulsion = 26851.529426 eV Total energy + Delta-G solvation = -4244.760368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58363 -40.16802 -39.43394 -37.75389 -36.39935 -35.36841 -33.03276 -32.30771 -31.95030 -31.06100 -30.78432 -28.37939 -27.81185 -26.47368 -23.92583 -23.44006 -23.34812 -22.49570 -21.66085 -20.93904 -19.24483 -17.55221 -17.29941 -17.12061 -16.62517 -16.38462 -16.24313 -16.02978 -15.62665 -15.57715 -15.38374 -14.71102 -14.40405 -14.19035 -13.78094 -13.52607 -13.50939 -13.36864 -13.18659 -12.99204 -12.80099 -12.54150 -12.33199 -12.25002 -12.08106 -11.67972 -11.48820 -11.40799 -11.09828 -10.99812 -10.89715 -10.79422 -10.46839 -10.42852 -9.81165 -9.73910 -9.35900 -9.22168 -8.91156 -8.85904 -8.80659 -8.62953 -7.90759 -6.38474 -4.41332 0.86010 1.20483 1.35489 1.43155 2.59829 2.62060 3.07009 3.16131 3.18969 3.30855 3.58654 4.04671 4.12817 4.15748 4.52629 4.72568 4.86110 4.90578 4.93708 4.95836 5.00804 5.03777 5.10789 5.17277 5.26893 5.33078 5.34629 5.55810 5.65495 5.69565 5.74952 5.89541 6.00150 6.10999 6.17397 6.25578 6.27741 6.28801 6.32483 6.37959 6.57416 6.68110 6.73496 6.83396 7.08852 7.16838 7.29608 7.73462 7.95363 8.21644 8.27377 8.66597 8.79754 9.20048 10.72420 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.007064 B = 0.004479 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3962.743758 B = 6249.573320 C = 8874.737884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.514 3.486 4 O -0.509 6.509 5 C -0.152 4.152 6 C -0.049 4.049 7 C -0.144 4.144 8 C -0.039 4.039 9 C -0.134 4.134 10 C 0.564 3.436 11 O -0.537 6.537 12 N -0.580 5.580 13 C 0.201 3.799 14 C -0.549 4.549 15 H 0.085 0.915 16 C 0.085 3.915 17 N -0.880 5.880 18 Si 0.861 3.139 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.168 3.832 23 C 0.118 3.882 24 C -0.158 4.158 25 C -0.081 4.081 26 C -0.180 4.180 27 C 0.094 3.906 28 N -0.460 5.460 29 C -0.010 4.010 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.182 0.818 36 H 0.033 0.967 37 H 0.037 0.963 38 H 0.269 0.731 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 1.722 4.319 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.360 3.640 4 O -0.398 6.398 5 C -0.153 4.153 6 C -0.067 4.067 7 C -0.162 4.162 8 C -0.057 4.057 9 C -0.137 4.137 10 C 0.352 3.648 11 O -0.414 6.414 12 N -0.311 5.311 13 C 0.080 3.920 14 C -0.586 4.586 15 H 0.103 0.897 16 C -0.121 4.121 17 N -0.516 5.516 18 Si 0.687 3.313 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.188 1.188 22 C 0.044 3.956 23 C -0.021 4.021 24 C -0.178 4.178 25 C -0.107 4.107 26 C -0.201 4.201 27 C -0.064 4.064 28 N -0.169 5.169 29 C -0.029 4.029 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.199 0.801 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.996 2.236 3.061 12.580 hybrid contribution -0.179 -0.404 2.075 2.121 sum -12.175 1.831 5.136 13.340 Atomic orbital electron populations 1.23253 0.76266 1.03567 1.02592 1.86544 1.23327 1.32838 1.84576 1.21232 0.89133 0.81270 0.72412 1.90830 1.66801 1.36002 1.46165 1.18807 0.88585 0.94825 1.13097 1.21571 0.94198 0.97453 0.93486 1.21230 0.93811 0.98702 1.02478 1.22959 1.04683 0.90520 0.87503 1.19887 0.93147 0.94555 1.06151 1.18128 0.79684 0.86328 0.80709 1.90756 1.65230 1.46693 1.38756 1.47698 1.34439 1.10546 1.38378 1.20040 0.95678 0.86042 0.90263 1.21345 1.11566 1.17362 1.08367 0.89689 1.24836 0.94304 0.95840 0.97091 1.69879 1.19313 1.23677 1.38731 0.87060 0.79325 0.80177 0.84723 1.19359 1.20687 1.18792 1.20175 0.95501 0.81662 0.98231 1.21903 0.92175 0.94312 0.93740 1.22121 1.01879 0.99786 0.94035 1.21551 0.94491 0.94940 0.99719 1.22108 0.98195 1.01934 0.97817 1.22784 0.98483 0.95236 0.89847 1.67641 1.05788 1.05906 1.37538 1.21163 0.93153 0.96833 0.91718 0.91866 0.88082 0.91927 0.84653 0.84572 0.80126 0.94924 0.94566 0.92051 0.88031 0.88541 0.84441 0.85101 0.85248 0.83147 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.57 9.81 -40.51 -0.40 -4.97 16 3 C 0.51 8.02 7.90 34.61 0.27 8.29 16 4 O -0.51 -9.08 16.13 -19.25 -0.31 -9.39 16 5 C -0.15 -2.45 5.87 -105.04 -0.62 -3.07 16 6 C -0.05 -0.70 9.61 -39.09 -0.38 -1.07 16 7 C -0.14 -2.25 10.02 -39.70 -0.40 -2.64 16 8 C -0.04 -0.72 7.53 -39.10 -0.29 -1.01 16 9 C -0.13 -2.60 4.94 -105.02 -0.52 -3.12 16 10 C 0.56 11.95 7.24 -12.32 -0.09 11.86 16 11 O -0.54 -12.50 16.57 5.31 0.09 -12.41 16 12 N -0.58 -11.72 2.44 -177.55 -0.43 -12.15 16 13 C 0.20 4.18 3.73 -5.19 -0.02 4.16 16 14 C -0.55 -12.95 7.40 -34.44 -0.25 -13.20 16 15 H 0.09 2.25 8.06 -52.48 -0.42 1.82 16 16 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.88 -23.28 13.96 55.43 0.77 -22.51 16 18 Si 0.86 18.34 27.47 -169.99 -4.67 13.67 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 22 C 0.17 3.05 5.77 -5.19 -0.03 3.02 16 23 C 0.12 2.01 6.36 -82.58 -0.53 1.48 16 24 C -0.16 -2.29 9.72 -39.44 -0.38 -2.68 16 25 C -0.08 -0.99 10.18 -39.28 -0.40 -1.39 16 26 C -0.18 -2.15 10.11 -39.44 -0.40 -2.54 16 27 C 0.09 1.33 11.18 -17.55 -0.20 1.13 16 28 N -0.46 -8.11 10.27 -9.47 -0.10 -8.21 16 29 C -0.01 -0.17 9.26 -38.76 -0.36 -0.53 16 30 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.14 1.56 7.60 -52.49 -0.40 1.17 16 34 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.18 3.74 4.74 -52.49 -0.25 3.49 16 36 H 0.03 0.67 7.17 -51.93 -0.37 0.30 16 37 H 0.04 0.76 4.84 -51.93 -0.25 0.51 16 38 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 39 H 0.10 1.70 7.97 -51.94 -0.41 1.29 16 40 H 0.10 1.83 7.36 -51.93 -0.38 1.45 16 41 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.14 2.59 7.64 -52.49 -0.40 2.19 16 LS Contribution 388.64 15.07 5.86 5.86 Total: -1.00 -30.97 388.64 -8.24 -39.22 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.44 Total: 8.83 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -3.62 Total: 2.07 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.24 Total: -42.87 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.62 Total: -26.77 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.67 Total: 13.67 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.97 -8.24 -39.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069559984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.675 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds