Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 N 1.46500 * 109.47153 * 120.00345 * 2 1 3 5 5 C 1.46500 * 120.00064 * 121.61104 * 4 2 1 6 6 C 1.50691 * 109.47140 * 269.99945 * 5 4 2 7 7 H 1.08001 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00208 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99825 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00517 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46689 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47342 * 119.99607 * 10 8 6 13 13 H 1.48499 * 109.47214 * 239.99961 * 10 8 6 14 14 C 1.34774 * 119.99679 * 301.61089 * 4 2 1 15 15 O 1.21556 * 119.99891 * 212.31232 * 14 4 2 16 16 C 1.47850 * 120.00050 * 32.31630 * 14 4 2 17 17 C 1.39578 * 120.13996 * 137.49753 * 16 14 4 18 18 C 1.37961 * 119.84807 * 180.27402 * 17 16 14 19 19 C 1.38357 * 120.14537 * 359.49475 * 18 17 16 20 20 S 1.76194 * 119.85311 * 180.25591 * 19 18 17 21 21 O 1.42097 * 106.40529 * 23.78696 * 20 19 18 22 22 O 1.42101 * 106.40281 * 156.71102 * 20 19 18 23 23 N 1.65603 * 107.22053 * 270.24718 * 20 19 18 24 24 C 1.46502 * 120.00086 * 89.99711 * 23 20 19 25 25 C 1.46505 * 120.00150 * 270.00623 * 23 20 19 26 26 C 1.38357 * 120.29114 * 0.50378 * 19 18 17 27 27 C 1.37962 * 120.14763 * 359.75016 * 26 19 18 28 28 H 1.08994 * 109.47006 * 253.47898 * 1 2 3 29 29 H 1.09000 * 109.46826 * 13.48340 * 1 2 3 30 30 H 1.09000 * 109.46716 * 133.47941 * 1 2 3 31 31 H 1.09000 * 109.47134 * 240.00475 * 2 1 3 32 32 H 1.09005 * 109.47113 * 223.64555 * 3 2 1 33 33 H 1.08996 * 109.47390 * 343.64668 * 3 2 1 34 34 H 1.09005 * 109.46761 * 103.65034 * 3 2 1 35 35 H 1.09002 * 109.46681 * 29.99939 * 5 4 2 36 36 H 1.09001 * 109.46824 * 149.99748 * 5 4 2 37 37 H 0.96995 * 119.99865 * 180.02562 * 9 8 6 38 38 H 1.07997 * 120.07776 * 359.97438 * 17 16 14 39 39 H 1.08002 * 119.92481 * 179.72341 * 18 17 16 40 40 H 1.08998 * 109.46907 * 90.00102 * 24 23 20 41 41 H 1.08994 * 109.47447 * 210.00741 * 24 23 20 42 42 H 1.09008 * 109.46772 * 330.00774 * 24 23 20 43 43 H 1.08996 * 109.47232 * 89.99558 * 25 23 20 44 44 H 1.08997 * 109.46658 * 209.99531 * 25 23 20 45 45 H 1.08998 * 109.46528 * 329.99225 * 25 23 20 46 46 H 1.08008 * 119.92832 * 179.77271 * 26 19 18 47 47 H 1.07999 * 120.07145 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8895 -1.8609 1.0619 6 6 2.0475 -3.1087 0.9928 7 1 0.9711 -3.0373 1.0442 8 6 2.6512 -4.3416 0.8651 9 7 3.9621 -4.4286 0.8031 10 14 1.6075 -5.8884 0.7787 11 1 0.1712 -5.5219 0.8688 12 1 1.8612 -6.5856 -0.5077 13 1 1.9602 -6.7873 1.9069 14 6 1.6662 -0.2495 2.4199 15 8 2.4358 -0.3677 3.3534 16 6 0.3437 0.3782 2.6272 17 6 -0.4120 0.0636 3.7578 18 6 -1.6477 0.6485 3.9423 19 6 -2.1337 1.5530 3.0150 20 16 -3.7100 2.3006 3.2617 21 8 -3.9660 2.2457 4.6584 22 8 -3.6996 3.5130 2.5205 23 7 -4.8350 1.3219 2.5413 24 6 -5.4678 0.2456 3.3078 25 6 -5.1973 1.5321 1.1374 26 6 -1.3897 1.8692 1.8922 27 6 -0.1547 1.2875 1.6930 28 1 -0.3633 -0.2922 0.9852 29 1 -0.3633 0.9994 -0.2396 30 1 -0.3633 -0.7071 -0.7457 31 1 1.8934 -0.5138 -0.8900 32 1 2.8623 1.5372 -0.7093 33 1 1.2315 2.1138 -0.2893 34 1 2.3898 1.7042 0.9987 35 1 3.4811 -1.7708 0.1509 36 1 3.5552 -1.9189 1.9231 37 1 4.3868 -5.2959 0.7129 38 1 -0.0323 -0.6398 4.4840 39 1 -2.2354 0.4026 4.8144 40 1 -6.3709 0.6234 3.7871 41 1 -5.7277 -0.5736 2.6375 42 1 -4.7754 -0.1137 4.0693 43 1 -4.5410 0.9396 0.5001 44 1 -6.2312 1.2255 0.9793 45 1 -5.0893 2.5878 0.8887 46 1 -1.7763 2.5734 1.1702 47 1 0.4249 1.5349 0.8159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069566636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = 9.298461 kcal Electronic energy + Delta-G solvation = -30732.815027 eV Core-core repulsion = 26625.805042 eV Total energy + Delta-G solvation = -4107.009984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15612 -38.12052 -37.49123 -36.62120 -36.45102 -36.02531 -33.58880 -32.00993 -31.38792 -30.47731 -28.43234 -27.40317 -26.98519 -25.02362 -24.46295 -23.28663 -22.41575 -21.80003 -19.39246 -18.72358 -18.24382 -17.61402 -16.71300 -16.50327 -16.39443 -15.93838 -15.60276 -15.04673 -14.99044 -14.75335 -14.50715 -14.26417 -14.14458 -13.85646 -13.59063 -13.39098 -13.14441 -12.92788 -12.74355 -12.59928 -12.45051 -12.37852 -12.21784 -12.06719 -11.94762 -11.91510 -11.81332 -11.35462 -11.25474 -11.15986 -11.01576 -10.94634 -10.70664 -10.35660 -10.23655 -9.75547 -9.46906 -9.35498 -9.17727 -8.56531 -8.47635 -7.75485 -6.16723 -4.23778 0.11031 0.54952 1.29985 2.61170 2.94897 3.20110 3.28198 3.30615 3.43820 3.59609 3.75631 4.06905 4.32029 4.44970 4.65213 4.69826 4.80355 4.87322 4.97429 5.04395 5.08593 5.17063 5.18188 5.27092 5.30984 5.40580 5.44877 5.45664 5.56934 5.59725 5.64569 5.67070 5.74193 5.83959 5.93266 6.02574 6.08888 6.16754 6.21346 6.27920 6.41228 6.70884 6.95597 7.29217 7.44128 7.80114 8.08359 8.21021 8.60496 8.84654 9.42513 10.90655 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.003226 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.047462 B = 8676.944893 C = 9419.267336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.135 3.865 3 C -0.182 4.182 4 N -0.604 5.604 5 C 0.247 3.753 6 C -0.536 4.536 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.564 3.436 15 O -0.522 6.522 16 C -0.083 4.083 17 C -0.085 4.085 18 C -0.042 4.042 19 C -0.659 4.659 20 S 2.695 3.305 21 O -0.955 6.955 22 O -0.956 6.956 23 N -1.006 6.006 24 C 0.092 3.908 25 C 0.081 3.919 26 C -0.066 4.066 27 C -0.112 4.112 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.264 0.736 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.140 0.860 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.282 12.257 -1.972 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.030 3.970 3 C -0.239 4.239 4 N -0.337 5.337 5 C 0.129 3.871 6 C -0.575 4.575 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.529 5.529 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.351 3.649 15 O -0.398 6.398 16 C -0.087 4.087 17 C -0.105 4.105 18 C -0.062 4.062 19 C -0.746 4.746 20 S 2.786 3.214 21 O -0.945 6.945 22 O -0.947 6.947 23 N -0.845 5.845 24 C -0.053 4.053 25 C -0.064 4.064 26 C -0.085 4.085 27 C -0.130 4.130 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.158 0.842 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.874 12.779 -1.080 21.194 hybrid contribution -0.045 -1.773 -0.430 1.825 sum -16.919 11.006 -1.509 20.240 Atomic orbital electron populations 1.23754 0.96362 1.01522 1.04117 1.21067 0.93448 0.92384 0.90150 1.22737 1.01725 0.96061 1.03380 1.48068 1.51117 1.31439 1.03077 1.19390 0.89159 0.79887 0.98665 1.21526 0.93544 0.91053 1.51365 0.92274 1.24946 0.95000 0.99080 0.94914 1.69945 1.08404 1.25080 1.49454 0.86449 0.80374 0.82891 0.77757 1.19802 1.20817 1.20793 1.18035 0.85288 0.77922 0.83654 1.90739 1.51653 1.54658 1.42794 1.20754 0.95967 0.96943 0.95042 1.21318 0.93759 0.99209 0.96171 1.20745 0.95683 0.92878 0.96866 1.30895 1.24070 1.14820 1.04855 1.01918 0.72977 0.73250 0.73259 1.93579 1.84513 1.86382 1.30062 1.93559 1.86796 1.41268 1.73042 1.57308 1.56310 1.49295 1.21604 1.21531 0.98490 0.89554 0.95759 1.21649 1.01932 1.02969 0.79826 1.20678 0.94463 0.97827 0.95534 1.23160 0.97244 0.93857 0.98726 0.89013 0.91054 0.92095 0.88149 0.91171 0.91125 0.91637 0.94717 0.93617 0.92590 0.84274 0.84187 0.92119 0.90672 0.90802 0.92331 0.90458 0.89752 0.84185 0.80040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 7.72 37.16 0.29 -2.37 16 2 C 0.13 2.06 3.27 -67.93 -0.22 1.84 16 3 C -0.18 -2.21 8.36 37.16 0.31 -1.90 16 4 N -0.60 -12.30 2.38 -168.58 -0.40 -12.70 16 5 C 0.25 6.20 5.32 -5.20 -0.03 6.17 16 6 C -0.54 -14.38 9.39 -34.44 -0.32 -14.70 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 10 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.56 11.69 5.87 -12.33 -0.07 11.62 16 15 O -0.52 -12.73 16.79 5.32 0.09 -12.64 16 16 C -0.08 -1.40 4.26 -104.97 -0.45 -1.84 16 17 C -0.08 -1.32 9.67 -39.18 -0.38 -1.70 16 18 C -0.04 -0.55 9.50 -39.64 -0.38 -0.93 16 19 C -0.66 -8.12 5.98 -39.49 -0.24 -8.36 16 20 S 2.70 30.63 5.65 -107.50 -0.61 30.02 16 21 O -0.96 -13.00 16.35 -57.17 -0.93 -13.94 16 22 O -0.96 -12.51 15.87 -57.17 -0.91 -13.42 16 23 N -1.01 -8.63 3.58 -129.20 -0.46 -9.10 16 24 C 0.09 0.64 10.29 59.85 0.62 1.26 16 25 C 0.08 0.53 10.66 59.85 0.64 1.17 16 26 C -0.07 -0.79 9.25 -39.64 -0.37 -1.15 16 27 C -0.11 -1.51 4.87 -39.19 -0.19 -1.70 16 28 H 0.09 1.39 3.99 -61.54 -0.25 1.15 16 29 H 0.07 0.70 5.24 -51.93 -0.27 0.43 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 1.56 7.81 -51.93 -0.41 1.15 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.64 6.18 -51.93 -0.32 0.32 16 34 H 0.06 0.91 6.82 -51.93 -0.35 0.56 16 35 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 36 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.14 1.53 7.61 -52.49 -0.40 1.13 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 42 H 0.07 0.51 7.79 -51.92 -0.40 0.11 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 45 H 0.08 0.56 7.02 -51.93 -0.36 0.20 16 46 H 0.14 1.32 7.60 -52.48 -0.40 0.92 16 47 H 0.18 2.16 1.07 -53.68 -0.06 2.10 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -35.15 383.93 -9.12 -44.27 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.51 Total: 1.60 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.89 Total: -10.98 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.13 Total: -46.56 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.75 Total: -40.00 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 30.63 SS G_CDS: -0.61 Total: 30.02 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.15 -9.12 -44.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069566636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.570 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds