Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 N 1.46500 * 109.47153 * 120.00345 * 2 1 3 5 5 C 1.46500 * 120.00064 * 121.61104 * 4 2 1 6 6 C 1.50691 * 109.47140 * 269.99945 * 5 4 2 7 7 H 1.08001 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00208 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99825 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00517 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46689 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47342 * 119.99607 * 10 8 6 13 13 H 1.48499 * 109.47214 * 239.99961 * 10 8 6 14 14 C 1.34774 * 119.99679 * 301.61089 * 4 2 1 15 15 O 1.21556 * 119.99891 * 212.31232 * 14 4 2 16 16 C 1.47850 * 120.00050 * 32.31630 * 14 4 2 17 17 C 1.39578 * 120.13996 * 137.49753 * 16 14 4 18 18 C 1.37961 * 119.84807 * 180.27402 * 17 16 14 19 19 C 1.38357 * 120.14537 * 359.49475 * 18 17 16 20 20 S 1.76194 * 119.85311 * 180.25591 * 19 18 17 21 21 O 1.42097 * 106.40529 * 23.78696 * 20 19 18 22 22 O 1.42101 * 106.40281 * 156.71102 * 20 19 18 23 23 N 1.65603 * 107.22053 * 270.24718 * 20 19 18 24 24 C 1.46502 * 120.00086 * 89.99711 * 23 20 19 25 25 C 1.46505 * 120.00150 * 270.00623 * 23 20 19 26 26 C 1.38357 * 120.29114 * 0.50378 * 19 18 17 27 27 C 1.37962 * 120.14763 * 359.75016 * 26 19 18 28 28 H 1.08994 * 109.47006 * 253.47898 * 1 2 3 29 29 H 1.09000 * 109.46826 * 13.48340 * 1 2 3 30 30 H 1.09000 * 109.46716 * 133.47941 * 1 2 3 31 31 H 1.09000 * 109.47134 * 240.00475 * 2 1 3 32 32 H 1.09005 * 109.47113 * 223.64555 * 3 2 1 33 33 H 1.08996 * 109.47390 * 343.64668 * 3 2 1 34 34 H 1.09005 * 109.46761 * 103.65034 * 3 2 1 35 35 H 1.09002 * 109.46681 * 29.99939 * 5 4 2 36 36 H 1.09001 * 109.46824 * 149.99748 * 5 4 2 37 37 H 0.96995 * 119.99865 * 180.02562 * 9 8 6 38 38 H 1.07997 * 120.07776 * 359.97438 * 17 16 14 39 39 H 1.08002 * 119.92481 * 179.72341 * 18 17 16 40 40 H 1.08998 * 109.46907 * 90.00102 * 24 23 20 41 41 H 1.08994 * 109.47447 * 210.00741 * 24 23 20 42 42 H 1.09008 * 109.46772 * 330.00774 * 24 23 20 43 43 H 1.08996 * 109.47232 * 89.99558 * 25 23 20 44 44 H 1.08997 * 109.46658 * 209.99531 * 25 23 20 45 45 H 1.08998 * 109.46528 * 329.99225 * 25 23 20 46 46 H 1.08008 * 119.92832 * 179.77271 * 26 19 18 47 47 H 1.07999 * 120.07145 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8895 -1.8609 1.0619 6 6 2.0475 -3.1087 0.9928 7 1 0.9711 -3.0373 1.0442 8 6 2.6512 -4.3416 0.8651 9 7 3.9621 -4.4286 0.8031 10 14 1.6075 -5.8884 0.7787 11 1 0.1712 -5.5219 0.8688 12 1 1.8612 -6.5856 -0.5077 13 1 1.9602 -6.7873 1.9069 14 6 1.6662 -0.2495 2.4199 15 8 2.4358 -0.3677 3.3534 16 6 0.3437 0.3782 2.6272 17 6 -0.4120 0.0636 3.7578 18 6 -1.6477 0.6485 3.9423 19 6 -2.1337 1.5530 3.0150 20 16 -3.7100 2.3006 3.2617 21 8 -3.9660 2.2457 4.6584 22 8 -3.6996 3.5130 2.5205 23 7 -4.8350 1.3219 2.5413 24 6 -5.4678 0.2456 3.3078 25 6 -5.1973 1.5321 1.1374 26 6 -1.3897 1.8692 1.8922 27 6 -0.1547 1.2875 1.6930 28 1 -0.3633 -0.2922 0.9852 29 1 -0.3633 0.9994 -0.2396 30 1 -0.3633 -0.7071 -0.7457 31 1 1.8934 -0.5138 -0.8900 32 1 2.8623 1.5372 -0.7093 33 1 1.2315 2.1138 -0.2893 34 1 2.3898 1.7042 0.9987 35 1 3.4811 -1.7708 0.1509 36 1 3.5552 -1.9189 1.9231 37 1 4.3868 -5.2959 0.7129 38 1 -0.0323 -0.6398 4.4840 39 1 -2.2354 0.4026 4.8144 40 1 -6.3709 0.6234 3.7871 41 1 -5.7277 -0.5736 2.6375 42 1 -4.7754 -0.1137 4.0693 43 1 -4.5410 0.9396 0.5001 44 1 -6.2312 1.2255 0.9793 45 1 -5.0893 2.5878 0.8887 46 1 -1.7763 2.5734 1.1702 47 1 0.4249 1.5349 0.8159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069566636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -15.452465 kcal Electronic energy + Delta-G solvation = -30733.888307 eV Core-core repulsion = 26625.805042 eV Total energy + Delta-G solvation = -4108.083265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.44851 -39.50222 -38.44887 -38.04582 -37.10702 -36.92755 -35.45231 -33.68759 -32.55739 -31.66977 -29.27744 -28.92268 -28.05001 -26.10088 -25.52922 -24.42847 -24.11742 -23.02725 -20.41287 -19.95936 -19.15853 -18.70639 -18.47088 -17.79181 -17.70823 -17.11886 -16.64258 -16.51091 -16.42353 -15.76306 -15.54898 -15.38135 -15.26973 -15.03590 -14.88876 -14.32647 -14.25438 -14.07126 -13.79983 -13.69005 -13.63322 -13.49930 -13.29026 -13.24050 -13.18470 -13.09282 -12.80298 -12.60625 -12.60147 -12.48681 -12.30578 -12.22625 -12.17531 -12.06174 -11.69986 -11.38647 -10.98461 -10.69542 -10.38628 -10.01752 -9.56190 -9.43971 -8.26385 -6.43290 -0.81252 -0.52743 0.23617 1.33832 1.35812 1.39783 1.49496 1.90290 2.10478 2.36076 2.44528 2.68609 3.03060 3.17637 3.39228 3.65899 3.74354 3.81564 3.89210 4.03534 4.10119 4.22188 4.30023 4.47125 4.54048 4.57327 4.59470 4.61230 4.79712 4.81230 4.83407 4.86792 4.92625 4.96034 4.99183 4.99215 5.04660 5.10126 5.12526 5.14501 5.18674 5.38337 5.53947 5.56924 5.64321 5.82248 5.99553 6.58660 6.66952 7.03523 7.29596 8.80498 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.003226 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.047462 B = 8676.944893 C = 9419.267336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.122 3.878 3 C -0.178 4.178 4 N -0.609 5.609 5 C 0.263 3.737 6 C -0.546 4.546 7 H 0.059 0.941 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.969 3.031 11 H -0.264 1.264 12 H -0.270 1.270 13 H -0.282 1.282 14 C 0.559 3.441 15 O -0.579 6.579 16 C -0.109 4.109 17 C -0.102 4.102 18 C -0.043 4.043 19 C -0.654 4.654 20 S 2.714 3.286 21 O -0.980 6.980 22 O -0.970 6.970 23 N -1.001 6.001 24 C 0.080 3.920 25 C 0.070 3.930 26 C -0.058 4.058 27 C -0.101 4.101 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.044 0.956 35 H 0.025 0.975 36 H -0.003 1.003 37 H 0.268 0.732 38 H 0.124 0.876 39 H 0.159 0.841 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.178 0.822 47 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.983 13.298 -3.948 25.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.019 3.981 3 C -0.235 4.235 4 N -0.340 5.340 5 C 0.142 3.858 6 C -0.585 4.585 7 H 0.077 0.923 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.793 3.207 11 H -0.188 1.188 12 H -0.195 1.195 13 H -0.208 1.208 14 C 0.348 3.652 15 O -0.459 6.459 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.062 4.062 19 C -0.740 4.740 20 S 2.803 3.197 21 O -0.970 6.970 22 O -0.960 6.960 23 N -0.842 5.842 24 C -0.065 4.065 25 C -0.074 4.074 26 C -0.077 4.077 27 C -0.119 4.119 28 H 0.093 0.907 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.015 0.985 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.176 0.824 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.102 0.898 46 H 0.195 0.805 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -20.589 13.847 -3.094 25.004 hybrid contribution 1.052 -2.052 0.169 2.312 sum -19.537 11.795 -2.925 23.008 Atomic orbital electron populations 1.23742 0.94153 1.04270 1.03333 1.21465 0.95401 0.93627 0.87636 1.22717 1.03687 0.94435 1.02643 1.48043 1.50566 1.30404 1.05018 1.18855 0.89196 0.81898 0.95842 1.21753 0.93563 0.91929 1.51239 0.92307 1.25872 0.96203 1.02529 0.94302 1.70071 1.10215 1.26096 1.50244 0.85351 0.78911 0.78446 0.78024 1.18763 1.19501 1.20825 1.18715 0.86405 0.77220 0.82817 1.90688 1.53566 1.57342 1.44350 1.20429 0.94251 0.99293 0.97262 1.21325 0.95005 0.99919 0.95900 1.20884 0.94671 0.92785 0.97823 1.31262 1.24780 1.13542 1.04417 1.01336 0.72671 0.73092 0.72594 1.93549 1.84706 1.86820 1.31902 1.93538 1.86953 1.42357 1.73184 1.57141 1.55023 1.49340 1.22666 1.21781 0.98664 0.89769 0.96265 1.21926 1.03637 1.03349 0.78476 1.21116 0.93333 0.97356 0.95872 1.23291 0.97826 0.92573 0.98174 0.90730 0.86639 0.91683 0.88732 0.90106 0.86676 0.93676 0.95721 0.98500 0.92303 0.85806 0.82381 0.91204 0.88602 0.91094 0.91130 0.88271 0.89819 0.80495 0.78424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.73 7.72 71.98 0.56 -4.18 16 2 C 0.12 3.65 3.27 44.99 0.15 3.79 16 3 C -0.18 -3.99 8.36 71.98 0.60 -3.39 16 4 N -0.61 -25.89 2.38 -805.53 -1.92 -27.81 16 5 C 0.26 14.02 5.32 85.63 0.46 14.48 16 6 C -0.55 -30.35 9.39 25.60 0.24 -30.11 16 7 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 8 C 0.01 0.58 5.46 84.65 0.46 1.04 16 9 N -0.93 -54.88 13.29 21.45 0.28 -54.59 16 10 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 C 0.56 24.49 5.87 86.79 0.51 25.00 16 15 O -0.58 -30.69 16.79 -3.89 -0.07 -30.76 16 16 C -0.11 -3.69 4.26 -20.09 -0.09 -3.78 16 17 C -0.10 -3.26 9.67 22.53 0.22 -3.04 16 18 C -0.04 -1.07 9.50 22.23 0.21 -0.86 16 19 C -0.65 -14.42 5.98 22.33 0.13 -14.28 16 20 S 2.71 54.01 5.65 -56.49 -0.32 53.70 16 21 O -0.98 -24.76 16.35 -128.00 -2.09 -26.85 16 22 O -0.97 -22.16 15.87 -128.00 -2.03 -24.19 16 23 N -1.00 -13.73 3.58 -562.68 -2.02 -15.75 16 24 C 0.08 0.87 10.29 127.77 1.31 2.19 16 25 C 0.07 0.63 10.66 127.77 1.36 1.99 16 26 C -0.06 -1.17 9.25 22.23 0.21 -0.97 16 27 C -0.10 -2.49 4.87 22.53 0.11 -2.38 16 28 H 0.07 2.14 3.99 -11.41 -0.05 2.09 16 29 H 0.12 1.69 5.24 -2.39 -0.01 1.68 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 2.91 7.81 -2.39 -0.02 2.89 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.12 1.55 6.18 -2.39 -0.01 1.53 16 34 H 0.04 1.23 6.82 -2.38 -0.02 1.21 16 35 H 0.02 1.34 7.93 -2.39 -0.02 1.32 16 36 H 0.00 -0.20 7.36 -2.39 -0.02 -0.21 16 37 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.16 3.29 7.61 -2.91 -0.02 3.27 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.10 0.66 8.07 -2.39 -0.02 0.64 16 42 H 0.07 0.82 7.79 -2.38 -0.02 0.80 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 45 H 0.08 0.79 7.02 -2.39 -0.02 0.77 16 46 H 0.18 2.31 7.60 -2.91 -0.02 2.29 16 47 H 0.20 4.04 1.07 -4.03 0.00 4.03 16 Total: -1.00 -81.50 383.93 1.27 -80.23 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.96 Total: 15.31 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 6.44 Total: -14.48 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -3.65 Total: -98.15 kcal Atomic # 8 Polarization: -77.61 SS G_CDS: -4.19 Total: -81.80 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 54.01 SS G_CDS: -0.32 Total: 53.70 kcal Total: -81.50 1.27 -80.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069566636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.773 kcal (2) G-P(sol) polarization free energy of solvation -81.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds