Wall clock time and date at job start Tue Mar 31 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31352 * 119.64372 * 2 1 4 4 C 1.33763 * 119.76256 * 179.72656 * 3 2 1 5 5 C 1.40713 * 120.87017 * 180.02562 * 4 3 2 6 6 C 1.35726 * 120.08503 * 179.97438 * 5 4 3 7 7 C 1.40624 * 120.84204 * 0.02562 * 6 5 4 8 8 C 1.47865 * 119.75407 * 179.97438 * 7 6 5 9 9 O 1.21548 * 119.99675 * 179.97438 * 8 7 6 10 10 N 1.34778 * 119.99893 * 359.97438 * 8 7 6 11 11 C 1.46497 * 119.99664 * 180.02562 * 10 8 7 12 12 C 1.53045 * 109.45935 * 275.02519 * 11 10 8 13 13 C 1.53191 * 109.31153 * 178.60287 * 12 11 10 14 14 N 1.46927 * 108.76547 * 54.66007 * 13 12 11 15 15 C 1.36930 * 120.63378 * 126.40467 * 14 13 12 16 16 H 1.08005 * 119.99976 * 332.60530 * 15 14 13 17 17 C 1.38808 * 120.00417 * 152.60775 * 15 14 13 18 18 N 1.31614 * 120.00554 * 159.34743 * 17 15 14 19 19 Si 1.86803 * 119.99541 * 339.34224 * 17 15 14 20 20 H 1.48497 * 109.47003 * 92.94632 * 19 17 15 21 21 H 1.48505 * 109.46935 * 212.94299 * 19 17 15 22 22 H 1.48501 * 109.47486 * 332.94297 * 19 17 15 23 23 C 1.46925 * 118.73451 * 306.38117 * 14 13 12 24 24 C 1.53036 * 109.45929 * 154.97623 * 11 10 8 25 25 C 1.38406 * 120.49156 * 359.97438 * 7 6 5 26 26 C 1.40456 * 119.49731 * 359.97438 * 25 7 6 27 27 N 1.33789 * 120.93352 * 180.02562 * 26 25 7 28 28 C 1.31303 * 119.73313 * 180.02562 * 27 26 25 29 29 C 1.50699 * 119.65883 * 179.97438 * 28 27 26 30 30 H 1.08996 * 109.47375 * 90.00313 * 1 2 3 31 31 H 1.08998 * 109.46993 * 210.00356 * 1 2 3 32 32 H 1.09003 * 109.47083 * 329.99818 * 1 2 3 33 33 H 1.08001 * 119.95963 * 359.97240 * 5 4 3 34 34 H 1.07996 * 119.57821 * 179.97438 * 6 5 4 35 35 H 0.97000 * 120.00109 * 359.97438 * 10 8 7 36 36 H 1.09001 * 109.46356 * 34.99823 * 11 10 8 37 37 H 1.08999 * 109.49632 * 298.56757 * 12 11 10 38 38 H 1.08998 * 109.49695 * 58.66555 * 12 11 10 39 39 H 1.08996 * 109.60065 * 294.86899 * 13 12 11 40 40 H 1.09003 * 109.69966 * 174.50547 * 13 12 11 41 41 H 0.97004 * 120.00441 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.58672 * 293.81980 * 23 14 13 43 43 H 1.08998 * 109.70071 * 173.47017 * 23 14 13 44 44 H 1.09004 * 109.49804 * 301.33253 * 24 11 10 45 45 H 1.08998 * 109.50238 * 61.43013 * 24 11 10 46 46 H 1.07998 * 120.25383 * 179.97438 * 25 7 6 47 47 H 1.08998 * 109.47378 * 269.97747 * 29 28 27 48 48 H 1.09000 * 109.47674 * 29.98252 * 29 28 27 49 49 H 1.09002 * 109.47129 * 149.98387 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1416 0.0000 4 6 3.4943 1.1444 0.0055 5 6 4.2137 2.3537 0.0062 6 6 5.5709 2.3379 0.0124 7 6 6.2777 1.1222 0.0177 8 6 7.7563 1.1331 0.0238 9 8 8.3717 0.0849 0.0288 10 7 8.4216 2.3053 0.0238 11 6 9.8865 2.3160 0.0293 12 6 10.3919 2.1964 1.4689 13 6 11.9236 2.1728 1.4678 14 7 12.4141 3.3591 0.7531 15 6 13.3142 4.2062 1.3424 16 1 13.3459 4.2971 2.4181 17 6 14.1858 4.9482 0.5573 18 7 14.7527 6.0308 1.0461 19 14 14.5544 4.4102 -1.1932 20 1 13.6243 5.0939 -2.1274 21 1 15.9538 4.7690 -1.5371 22 1 14.3781 2.9401 -1.3068 23 6 11.9207 3.6189 -0.6063 24 6 10.3891 3.6259 -0.5820 25 6 5.5997 -0.0844 0.0172 26 6 4.1952 -0.0884 0.0119 27 7 3.5107 -1.2380 0.0118 28 6 2.1979 -1.2143 0.0063 29 6 1.4287 -2.5101 0.0056 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 3.6854 3.2956 0.0018 34 1 6.1149 3.2709 0.0124 35 1 7.9304 3.1417 0.0194 36 1 10.2581 1.4755 -0.5570 37 1 10.0414 3.0497 2.0495 38 1 10.0143 1.2747 1.9116 39 1 12.2751 1.2720 0.9650 40 1 12.2920 2.1861 2.4936 41 1 15.3616 6.5495 0.4973 42 1 12.2720 2.8359 -1.2784 43 1 12.2852 4.5866 -0.9508 44 1 10.0096 3.7218 -1.5994 45 1 10.0386 4.4655 0.0181 46 1 6.1464 -1.0158 0.0208 47 1 1.2471 -2.8244 -1.0222 48 1 2.0064 -3.2760 0.5230 49 1 0.4759 -2.3673 0.5155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069669960.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:47 Heat of formation + Delta-G solvation = 53.871522 kcal Electronic energy + Delta-G solvation = -30253.822225 eV Core-core repulsion = 26181.426968 eV Total energy + Delta-G solvation = -4072.395257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.96269 -40.15647 -38.16138 -37.33732 -35.50005 -34.72085 -33.64759 -32.19016 -31.47908 -30.50361 -30.27151 -28.82996 -28.50421 -25.30372 -24.04119 -23.73529 -22.99461 -22.73620 -21.85612 -20.91017 -19.78752 -18.88507 -18.50749 -17.23658 -16.92999 -16.36573 -16.03667 -15.85514 -15.16638 -14.95514 -14.71372 -14.35428 -14.20309 -14.13542 -13.99398 -13.87748 -13.78885 -13.64248 -13.43554 -13.13111 -12.98890 -12.89542 -12.42426 -12.32543 -12.09701 -12.02531 -11.94958 -11.83948 -11.81299 -11.70671 -11.02874 -10.85333 -10.59264 -10.32167 -10.23661 -10.02542 -9.76391 -9.55121 -9.48884 -9.22803 -9.01517 -8.84843 -8.65172 -7.01295 -5.96576 -3.32603 -0.34271 -0.01408 1.42075 1.95351 2.97339 3.01623 3.29615 3.43665 3.48048 3.51131 3.56724 3.61027 3.75049 4.18894 4.23095 4.41744 4.51174 4.51877 4.60221 4.75130 4.90710 4.93133 4.96467 5.02284 5.09130 5.15200 5.26747 5.29610 5.35037 5.36865 5.45678 5.49450 5.60235 5.62434 5.74620 5.78729 5.85656 6.00657 6.02835 6.13077 6.15193 6.28670 6.36435 6.55131 6.61205 6.62710 6.66912 6.83569 6.89326 7.28226 7.46528 7.94038 8.12526 8.31223 8.91938 9.70064 10.07464 11.19304 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.001812 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.769047 B =15444.590553 C =15769.480191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.115 3.885 3 N -0.428 5.428 4 C 0.093 3.907 5 C -0.086 4.086 6 C -0.074 4.074 7 C -0.112 4.112 8 C 0.555 3.445 9 O -0.530 6.530 10 N -0.715 5.715 11 C 0.150 3.850 12 C -0.142 4.142 13 C 0.151 3.849 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.086 0.914 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.141 4.141 25 C -0.014 4.014 26 C 0.070 3.930 27 N -0.417 5.417 28 C 0.105 3.895 29 C -0.107 4.107 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.397 0.603 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.263 0.737 42 H 0.028 0.972 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.155 0.845 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.325 -11.855 -3.468 33.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.042 4.042 3 N -0.143 5.143 4 C -0.031 4.031 5 C -0.106 4.106 6 C -0.095 4.095 7 C -0.118 4.118 8 C 0.341 3.659 9 O -0.408 6.408 10 N -0.366 5.366 11 C 0.047 3.953 12 C -0.182 4.182 13 C 0.024 3.976 14 N -0.329 5.329 15 C -0.388 4.388 16 H 0.104 0.896 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.181 4.181 25 C -0.035 4.035 26 C -0.054 4.054 27 N -0.131 5.131 28 C -0.052 4.052 29 C -0.165 4.165 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.232 0.768 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -30.486 -12.337 -3.462 33.069 hybrid contribution 0.086 0.370 -1.040 1.107 sum -30.400 -11.968 -4.502 32.979 Atomic orbital electron populations 1.20874 0.87267 1.04432 1.03953 1.22497 0.98584 0.88837 0.94240 1.68565 1.07214 1.28674 1.09854 1.19650 0.90151 0.94250 0.99045 1.20654 0.93340 0.96774 0.99797 1.21067 0.94092 0.97631 0.96669 1.20087 0.94023 0.93663 1.03987 1.18087 0.86390 0.84400 0.77006 1.90801 1.69010 1.31517 1.49461 1.46213 1.08387 1.07820 1.74175 1.21069 0.76938 0.99447 0.97849 1.22391 0.98954 1.01391 0.95446 1.20899 0.90412 0.89131 0.97153 1.44399 1.49517 1.25532 1.13501 1.18925 1.10159 1.16532 0.93160 0.89627 1.25284 0.97417 0.97085 0.97806 1.69833 1.32902 1.14856 1.37487 0.86979 0.76440 0.79562 0.85866 1.21644 1.23091 1.19482 1.21303 0.90489 1.00127 0.87788 1.22360 0.99567 0.96301 0.99865 1.21221 0.90645 0.99038 0.92569 1.19422 0.94882 0.89318 1.01729 1.68521 1.07695 1.28261 1.08657 1.22448 0.90491 0.96821 0.95450 1.20859 0.99319 0.92333 1.03939 0.89422 0.89477 0.89791 0.83647 0.84164 0.76779 0.89623 0.91718 0.92158 0.95636 0.91502 0.92761 0.95435 0.90451 0.92144 0.91035 0.82744 0.89487 0.89762 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.42 9.77 36.00 0.35 -0.07 16 2 C 0.11 0.94 6.79 -82.25 -0.56 0.38 16 3 N -0.43 -4.46 10.37 -7.00 -0.07 -4.53 16 4 C 0.09 1.03 6.59 -84.72 -0.56 0.48 16 5 C -0.09 -0.78 9.95 -39.55 -0.39 -1.18 16 6 C -0.07 -0.66 9.44 -39.58 -0.37 -1.03 16 7 C -0.11 -1.29 5.87 -105.00 -0.62 -1.90 16 8 C 0.56 7.68 7.73 -12.32 -0.10 7.59 16 9 O -0.53 -9.26 15.96 5.32 0.08 -9.17 16 10 N -0.72 -9.06 5.03 -54.70 -0.27 -9.33 16 11 C 0.15 2.36 2.42 -67.89 -0.16 2.19 16 12 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 13 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 14 N -0.61 -14.14 2.77 -172.32 -0.48 -14.62 16 15 C -0.26 -7.15 10.03 -15.06 -0.15 -7.31 16 16 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 17 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 18 N -0.91 -27.54 13.97 55.49 0.78 -26.77 16 19 Si 0.88 22.13 24.35 -169.99 -4.14 17.99 16 20 H -0.29 -6.92 6.62 56.52 0.37 -6.55 16 21 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 22 H -0.27 -6.71 6.63 56.52 0.37 -6.34 16 23 C 0.13 2.73 4.20 -3.71 -0.02 2.71 16 24 C -0.14 -2.31 5.55 -26.61 -0.15 -2.45 16 25 C -0.01 -0.17 9.56 -38.68 -0.37 -0.54 16 26 C 0.07 0.84 6.59 -84.81 -0.56 0.28 16 27 N -0.42 -4.74 10.37 -7.07 -0.07 -4.82 16 28 C 0.10 0.89 6.79 -82.27 -0.56 0.33 16 29 C -0.11 -0.47 9.77 36.01 0.35 -0.11 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.14 5.91 -51.93 -0.31 -0.17 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 0.86 6.35 -52.49 -0.33 0.53 16 35 H 0.40 3.84 6.59 -40.82 -0.27 3.57 16 36 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.03 0.58 7.08 -51.93 -0.37 0.22 16 43 H 0.08 1.78 4.50 -51.93 -0.23 1.55 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.15 1.94 7.61 -52.49 -0.40 1.54 16 47 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 0.16 5.91 -51.93 -0.31 -0.15 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -34.91 388.75 -9.30 -44.21 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.86 Total: 0.83 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -4.12 Total: 0.36 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.12 Total: -60.07 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.91 -9.30 -44.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069669960.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.080 kcal (2) G-P(sol) polarization free energy of solvation -34.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds