Wall clock time and date at job start Tue Mar 31 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38259 * 120.00046 * 2 1 4 4 C 1.38214 * 119.99853 * 180.23306 * 3 2 1 5 5 N 1.48022 * 119.99778 * 179.83753 * 4 3 2 6 6 O 1.21799 * 119.99954 * 179.97438 * 5 4 3 7 7 O 1.21801 * 120.00189 * 359.96320 * 5 4 3 8 8 C 1.38261 * 120.00322 * 359.80225 * 4 3 2 9 9 C 1.38215 * 119.99784 * 359.97438 * 8 4 3 10 10 C 1.38222 * 120.00170 * 179.78595 * 2 1 3 11 11 S 1.76196 * 119.99873 * 359.97438 * 10 2 1 12 12 O 1.42094 * 106.40461 * 177.08765 * 11 10 2 13 13 O 1.42108 * 106.39820 * 44.16879 * 11 10 2 14 14 N 1.65600 * 107.22095 * 290.63306 * 11 10 2 15 15 C 1.46962 * 120.59944 * 91.52267 * 14 11 10 16 16 C 1.53364 * 108.63781 * 235.24916 * 15 14 11 17 17 N 1.46967 * 108.63661 * 310.57686 * 16 15 14 18 18 C 1.36926 * 120.59233 * 235.20426 * 17 16 15 19 19 H 1.07997 * 120.00271 * 151.99180 * 18 17 16 20 20 C 1.38816 * 120.00105 * 331.71429 * 18 17 16 21 21 N 1.31614 * 120.00165 * 345.72031 * 20 18 17 22 22 Si 1.86803 * 119.99961 * 165.72584 * 20 18 17 23 23 H 1.48496 * 109.47386 * 59.99799 * 22 20 18 24 24 H 1.48499 * 109.47180 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46724 * 299.99817 * 22 20 18 26 26 C 1.46961 * 118.80870 * 55.47594 * 17 16 15 27 27 C 1.46967 * 120.59043 * 271.54951 * 14 11 10 28 28 H 1.09007 * 109.47322 * 273.43502 * 1 2 3 29 29 H 1.08997 * 109.47353 * 33.44111 * 1 2 3 30 30 H 1.09008 * 109.47154 * 153.44140 * 1 2 3 31 31 H 1.08001 * 120.00086 * 0.05967 * 3 2 1 32 32 H 1.07990 * 120.00117 * 180.02562 * 8 4 3 33 33 H 1.07998 * 119.99934 * 179.97438 * 9 8 4 34 34 H 1.09002 * 109.60707 * 115.50350 * 15 14 11 35 35 H 1.09003 * 109.60828 * 354.99775 * 15 14 11 36 36 H 1.09003 * 109.61058 * 190.82898 * 16 15 14 37 37 H 1.09004 * 109.74590 * 70.40346 * 16 15 14 38 38 H 0.96995 * 120.00180 * 179.97438 * 21 20 18 39 39 H 1.08993 * 109.61132 * 64.27055 * 26 17 16 40 40 H 1.09002 * 109.60852 * 184.77602 * 26 17 16 41 41 H 1.08998 * 109.60716 * 244.49818 * 27 14 11 42 42 H 1.09000 * 109.60947 * 4.82971 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 -0.0049 5 7 4.3204 2.4792 -0.0085 6 8 5.5384 2.4792 -0.0123 7 8 3.7115 3.5341 -0.0079 8 6 4.2717 0.0000 -0.0056 9 6 3.5806 -1.1970 -0.0009 10 6 2.1981 -1.1970 0.0045 11 16 1.3171 -2.7229 0.0109 12 8 2.2954 -3.7514 -0.0547 13 8 0.2693 -2.5852 -0.9392 14 7 0.5898 -2.8629 1.4920 15 6 -0.7768 -2.3659 1.7044 16 6 -0.7631 -1.3814 2.8803 17 7 -0.0531 -2.0046 4.0062 18 6 -0.6541 -2.1196 5.2311 19 1 -0.3742 -2.9227 5.8967 20 6 -1.6191 -1.2005 5.6199 21 7 -1.7602 -0.0734 4.9550 22 14 -2.7173 -1.5633 7.0868 23 1 -1.8800 -1.7394 8.3005 24 1 -3.6565 -0.4318 7.2938 25 1 -3.4880 -2.8069 6.8324 26 6 1.3156 -2.4965 3.7953 27 6 1.2998 -3.4861 2.6179 28 1 -0.3634 0.0616 1.0259 29 1 -0.3634 0.8575 -0.5663 30 1 -0.3634 -0.9193 -0.4595 31 1 1.6582 2.1327 0.0010 32 1 5.3516 0.0000 -0.0090 33 1 4.1206 -2.1323 -0.0019 34 1 -1.4382 -3.2012 1.9343 35 1 -1.1248 -1.8571 0.8054 36 1 -1.7865 -1.1504 3.1759 37 1 -0.2511 -0.4648 2.5873 38 1 -2.4347 0.5686 5.2264 39 1 1.9737 -1.6591 3.5640 40 1 1.6653 -3.0021 4.6954 41 1 0.7862 -4.4011 2.9128 42 1 2.3222 -3.7199 2.3212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069737649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:51 Heat of formation + Delta-G solvation = -1.235087 kcal Electronic energy + Delta-G solvation = -30910.278155 eV Core-core repulsion = 26601.552397 eV Total energy + Delta-G solvation = -4308.725759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.108 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.41784 -39.88480 -37.92870 -37.57040 -36.79091 -36.03462 -34.07612 -33.57600 -32.31522 -31.29001 -30.45447 -27.56111 -27.08743 -26.57850 -23.54075 -23.18064 -23.09256 -22.34726 -20.33654 -19.22554 -19.04896 -18.84644 -18.27056 -17.76314 -17.62250 -16.56326 -16.25825 -15.50369 -15.11999 -14.98318 -14.57931 -14.33993 -14.18485 -14.04000 -13.84052 -13.71529 -13.59510 -13.14601 -13.09742 -12.47663 -12.31983 -12.23391 -11.96626 -11.80936 -11.76455 -11.61951 -11.54061 -11.33711 -11.21887 -11.02509 -10.89129 -10.83747 -10.61144 -10.37316 -10.25773 -10.08987 -9.89496 -9.41607 -9.00271 -8.63797 -6.85777 -5.97462 -3.43521 -0.66902 0.23092 0.60798 0.90956 1.10605 2.62701 2.93855 3.27669 3.34321 3.34902 3.54125 3.88050 4.10566 4.16039 4.33544 4.48114 4.65349 4.78705 4.88055 5.01469 5.19027 5.20972 5.24721 5.29818 5.39115 5.48013 5.54871 5.64900 5.70514 5.84385 5.89673 6.03627 6.06764 6.13554 6.19788 6.23133 6.41223 6.61530 6.68800 7.05637 7.37205 7.40510 7.60833 8.24030 9.00376 9.61837 10.17391 11.10151 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.003994 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.316843 B = 7008.624013 C = 8417.786118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.040 3.960 3 C -0.079 4.079 4 C 0.009 3.991 5 N 0.022 4.978 6 O -0.153 6.153 7 O -0.149 6.149 8 C -0.090 4.090 9 C -0.016 4.016 10 C -0.642 4.642 11 S 2.689 3.311 12 O -0.955 6.955 13 O -0.949 6.949 14 N -0.978 5.978 15 C 0.081 3.919 16 C 0.151 3.849 17 N -0.587 5.587 18 C -0.256 4.256 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.906 5.906 22 Si 0.907 3.093 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.130 3.870 27 C 0.103 3.897 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.026 0.974 38 H 0.257 0.743 39 H 0.021 0.979 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 -2.080 -10.845 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.038 3.962 3 C -0.099 4.099 4 C -0.073 4.073 5 N 0.544 4.456 6 O -0.370 6.370 7 O -0.367 6.367 8 C -0.110 4.110 9 C -0.035 4.035 10 C -0.725 4.725 11 S 2.776 3.224 12 O -0.945 6.945 13 O -0.939 6.939 14 N -0.819 5.819 15 C -0.045 4.045 16 C 0.024 3.976 17 N -0.309 5.309 18 C -0.386 4.386 19 H 0.086 0.914 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.737 3.263 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.002 3.998 27 C -0.024 4.024 28 H 0.135 0.865 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.179 0.821 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.402 -3.134 -11.467 13.502 hybrid contribution 0.083 1.170 1.118 1.620 sum 6.486 -1.964 -10.350 12.371 Atomic orbital electron populations 1.22370 0.88424 1.07878 1.06864 1.19604 0.97261 0.90020 0.89356 1.21103 0.91052 1.00756 0.96990 1.21386 0.92728 0.83877 1.09349 1.43674 1.01300 1.02858 0.97776 1.94538 0.95399 1.94160 1.52893 1.94565 1.70018 1.19442 1.52680 1.21099 1.02228 0.89742 0.97943 1.20988 0.91844 0.98803 0.91895 1.31694 1.06635 1.21831 1.12346 1.02305 0.73338 0.73303 0.73427 1.93554 1.61694 1.53027 1.86206 1.93501 1.54770 1.86132 1.59477 1.57380 1.24457 1.72839 1.27189 1.22720 0.80137 1.00179 1.01435 1.21394 1.00795 0.90770 0.84684 1.43878 1.09456 1.69862 1.07718 1.19183 1.18431 1.07457 0.93487 0.91405 1.25070 1.01372 0.94605 0.98346 1.69922 1.35522 1.07524 1.42036 0.86300 0.80392 0.77319 0.82320 1.20862 1.21549 1.20881 1.21386 0.88431 0.94682 0.95327 1.22216 0.95519 0.97285 0.87382 0.86501 0.89036 0.86282 0.82064 0.82204 0.81738 0.90726 0.89690 0.87444 0.95618 0.93296 0.96124 0.91266 0.90516 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 8.08 36.00 0.29 -2.13 16 2 C 0.04 0.51 5.87 -104.62 -0.61 -0.11 16 3 C -0.08 -0.99 9.23 -39.58 -0.37 -1.36 16 4 C 0.01 0.11 6.85 -79.94 -0.55 -0.43 16 5 N 0.02 0.31 4.45 33.96 0.15 0.46 16 6 O -0.15 -2.17 18.45 -29.46 -0.54 -2.71 16 7 O -0.15 -2.20 18.45 -29.46 -0.54 -2.75 16 8 C -0.09 -1.00 9.56 -39.58 -0.38 -1.38 16 9 C -0.02 -0.18 9.55 -39.58 -0.38 -0.55 16 10 C -0.64 -8.23 5.92 -39.58 -0.23 -8.46 16 11 S 2.69 37.37 5.19 -107.50 -0.56 36.81 16 12 O -0.95 -14.27 15.71 -57.17 -0.90 -15.16 16 13 O -0.95 -14.38 14.12 -57.17 -0.81 -15.19 16 14 N -0.98 -14.54 3.26 -113.01 -0.37 -14.91 16 15 C 0.08 1.29 5.68 -3.60 -0.02 1.27 16 16 C 0.15 3.00 5.01 -3.60 -0.02 2.98 16 17 N -0.59 -12.82 2.97 -171.78 -0.51 -13.33 16 18 C -0.26 -6.32 9.60 -15.06 -0.14 -6.47 16 19 H 0.07 1.65 7.87 -52.49 -0.41 1.23 16 20 C 0.00 0.12 4.99 -17.43 -0.09 0.03 16 21 N -0.91 -23.79 11.00 55.49 0.61 -23.18 16 22 Si 0.91 20.17 29.58 -169.99 -5.03 15.14 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 26 C 0.13 2.33 6.70 -3.37 -0.02 2.30 16 27 C 0.10 1.52 6.56 -3.37 -0.02 1.50 16 28 H 0.12 1.55 4.48 -51.92 -0.23 1.32 16 29 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 30 H 0.12 1.51 3.23 -51.92 -0.17 1.34 16 31 H 0.16 1.78 7.61 -52.49 -0.40 1.38 16 32 H 0.16 1.40 7.61 -52.49 -0.40 1.00 16 33 H 0.17 1.48 7.34 -52.49 -0.39 1.09 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.18 4.49 -51.93 -0.23 0.94 16 36 H 0.11 2.44 5.88 -51.93 -0.31 2.14 16 37 H 0.03 0.52 5.91 -51.93 -0.31 0.22 16 38 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 1.20 7.93 -51.93 -0.41 0.78 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 0.99 7.13 -51.93 -0.37 0.62 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -29.75 348.43 -10.24 -39.99 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.45 Total: 2.38 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -2.54 Total: -12.81 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.12 Total: -50.96 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -2.79 Total: -35.81 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: 37.37 SS G_CDS: -0.56 Total: 36.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.75 -10.24 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.751 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds