Wall clock time and date at job start Tue Mar 31 2020 06:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38259 * 120.00046 * 2 1 4 4 C 1.38214 * 119.99853 * 180.23306 * 3 2 1 5 5 N 1.48022 * 119.99778 * 179.83753 * 4 3 2 6 6 O 1.21799 * 119.99954 * 179.97438 * 5 4 3 7 7 O 1.21801 * 120.00189 * 359.96320 * 5 4 3 8 8 C 1.38261 * 120.00322 * 359.80225 * 4 3 2 9 9 C 1.38215 * 119.99784 * 359.97438 * 8 4 3 10 10 C 1.38222 * 120.00170 * 179.78595 * 2 1 3 11 11 S 1.76196 * 119.99873 * 359.97438 * 10 2 1 12 12 O 1.42094 * 106.40461 * 177.08765 * 11 10 2 13 13 O 1.42108 * 106.39820 * 44.16879 * 11 10 2 14 14 N 1.65600 * 107.22095 * 290.63306 * 11 10 2 15 15 C 1.46962 * 120.59944 * 91.52267 * 14 11 10 16 16 C 1.53364 * 108.63781 * 235.24916 * 15 14 11 17 17 N 1.46967 * 108.63661 * 310.57686 * 16 15 14 18 18 C 1.36926 * 120.59233 * 235.20426 * 17 16 15 19 19 H 1.07997 * 120.00271 * 151.99180 * 18 17 16 20 20 C 1.38816 * 120.00105 * 331.71429 * 18 17 16 21 21 N 1.31614 * 120.00165 * 345.72031 * 20 18 17 22 22 Si 1.86803 * 119.99961 * 165.72584 * 20 18 17 23 23 H 1.48496 * 109.47386 * 59.99799 * 22 20 18 24 24 H 1.48499 * 109.47180 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46724 * 299.99817 * 22 20 18 26 26 C 1.46961 * 118.80870 * 55.47594 * 17 16 15 27 27 C 1.46967 * 120.59043 * 271.54951 * 14 11 10 28 28 H 1.09007 * 109.47322 * 273.43502 * 1 2 3 29 29 H 1.08997 * 109.47353 * 33.44111 * 1 2 3 30 30 H 1.09008 * 109.47154 * 153.44140 * 1 2 3 31 31 H 1.08001 * 120.00086 * 0.05967 * 3 2 1 32 32 H 1.07990 * 120.00117 * 180.02562 * 8 4 3 33 33 H 1.07998 * 119.99934 * 179.97438 * 9 8 4 34 34 H 1.09002 * 109.60707 * 115.50350 * 15 14 11 35 35 H 1.09003 * 109.60828 * 354.99775 * 15 14 11 36 36 H 1.09003 * 109.61058 * 190.82898 * 16 15 14 37 37 H 1.09004 * 109.74590 * 70.40346 * 16 15 14 38 38 H 0.96995 * 120.00180 * 179.97438 * 21 20 18 39 39 H 1.08993 * 109.61132 * 64.27055 * 26 17 16 40 40 H 1.09002 * 109.60852 * 184.77602 * 26 17 16 41 41 H 1.08998 * 109.60716 * 244.49818 * 27 14 11 42 42 H 1.09000 * 109.60947 * 4.82971 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1973 -0.0049 5 7 4.3204 2.4792 -0.0085 6 8 5.5384 2.4792 -0.0123 7 8 3.7115 3.5341 -0.0079 8 6 4.2717 0.0000 -0.0056 9 6 3.5806 -1.1970 -0.0009 10 6 2.1981 -1.1970 0.0045 11 16 1.3171 -2.7229 0.0109 12 8 2.2954 -3.7514 -0.0547 13 8 0.2693 -2.5852 -0.9392 14 7 0.5898 -2.8629 1.4920 15 6 -0.7768 -2.3659 1.7044 16 6 -0.7631 -1.3814 2.8803 17 7 -0.0531 -2.0046 4.0062 18 6 -0.6541 -2.1196 5.2311 19 1 -0.3742 -2.9227 5.8967 20 6 -1.6191 -1.2005 5.6199 21 7 -1.7602 -0.0734 4.9550 22 14 -2.7173 -1.5633 7.0868 23 1 -1.8800 -1.7394 8.3005 24 1 -3.6565 -0.4318 7.2938 25 1 -3.4880 -2.8069 6.8324 26 6 1.3156 -2.4965 3.7953 27 6 1.2998 -3.4861 2.6179 28 1 -0.3634 0.0616 1.0259 29 1 -0.3634 0.8575 -0.5663 30 1 -0.3634 -0.9193 -0.4595 31 1 1.6582 2.1327 0.0010 32 1 5.3516 0.0000 -0.0090 33 1 4.1206 -2.1323 -0.0019 34 1 -1.4382 -3.2012 1.9343 35 1 -1.1248 -1.8571 0.8054 36 1 -1.7865 -1.1504 3.1759 37 1 -0.2511 -0.4648 2.5873 38 1 -2.4347 0.5686 5.2264 39 1 1.9737 -1.6591 3.5640 40 1 1.6653 -3.0021 4.6954 41 1 0.7862 -4.4011 2.9128 42 1 2.3222 -3.7199 2.3212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069737649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:50 Heat of formation + Delta-G solvation = -18.874658 kcal Electronic energy + Delta-G solvation = -30911.043064 eV Core-core repulsion = 26601.552397 eV Total energy + Delta-G solvation = -4309.490668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.108 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.48207 -40.85010 -39.31261 -38.73201 -37.88323 -37.18969 -35.65890 -34.57247 -33.28458 -32.92239 -31.90165 -28.59914 -28.20314 -28.06753 -25.08037 -24.52350 -24.19897 -23.34378 -21.73626 -20.36185 -20.13687 -19.92365 -19.52678 -18.83432 -18.78431 -18.02268 -17.45783 -16.82768 -16.50302 -16.02436 -15.80052 -15.53452 -15.43517 -15.28628 -15.21604 -15.01772 -14.64490 -14.57896 -14.17671 -13.67087 -13.58894 -13.39696 -13.11243 -12.97286 -12.89797 -12.81906 -12.75609 -12.63447 -12.60834 -12.48508 -12.45519 -12.16305 -11.99859 -11.95177 -11.74764 -11.44579 -11.20777 -10.58873 -10.32630 -10.23208 -8.60571 -7.85151 -5.32377 -1.70099 -0.88246 -0.30898 -0.14667 0.08186 1.50203 1.52310 1.57017 1.58643 1.89445 2.45002 2.52985 2.90420 3.11109 3.23569 3.30527 3.54924 3.61370 3.66796 3.79113 3.89624 4.08117 4.28150 4.30368 4.35022 4.40544 4.47283 4.50813 4.56445 4.68305 4.72214 4.77010 4.86708 4.93038 5.00337 5.11086 5.20281 5.29456 5.31813 5.60610 5.66326 5.78389 6.29297 6.41002 7.16890 7.85918 8.36371 9.18918 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.003994 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.316843 B = 7008.624013 C = 8417.786118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 C -0.086 4.086 4 C -0.003 4.003 5 N 0.022 4.978 6 O -0.146 6.146 7 O -0.176 6.176 8 C -0.082 4.082 9 C -0.011 4.011 10 C -0.648 4.648 11 S 2.707 3.293 12 O -0.960 6.960 13 O -0.961 6.961 14 N -0.981 5.981 15 C 0.093 3.907 16 C 0.156 3.844 17 N -0.606 5.606 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.044 4.044 21 N -0.932 5.932 22 Si 0.962 3.038 23 H -0.281 1.281 24 H -0.298 1.298 25 H -0.278 1.278 26 C 0.126 3.874 27 C 0.108 3.892 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.169 0.831 32 H 0.187 0.813 33 H 0.192 0.808 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.019 0.981 38 H 0.250 0.750 39 H 0.018 0.982 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -3.391 -11.617 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.028 3.972 3 C -0.106 4.106 4 C -0.085 4.085 5 N 0.542 4.458 6 O -0.366 6.366 7 O -0.388 6.388 8 C -0.101 4.101 9 C -0.031 4.031 10 C -0.733 4.733 11 S 2.796 3.204 12 O -0.950 6.950 13 O -0.952 6.952 14 N -0.821 5.821 15 C -0.033 4.033 16 C 0.029 3.971 17 N -0.329 5.329 18 C -0.390 4.390 19 H 0.086 0.914 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.791 3.209 23 H -0.207 1.207 24 H -0.224 1.224 25 H -0.204 1.204 26 C -0.001 4.001 27 C -0.018 4.018 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.187 0.813 32 H 0.204 0.796 33 H 0.209 0.791 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.037 0.963 38 H 0.060 0.940 39 H 0.036 0.964 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.716 -4.454 -12.248 15.145 hybrid contribution -0.205 1.551 1.325 2.050 sum 7.511 -2.903 -10.923 13.570 Atomic orbital electron populations 1.22339 0.88336 1.08669 1.06198 1.19672 0.97489 0.90186 0.89862 1.21225 0.91254 1.01105 0.96990 1.21573 0.92945 0.83717 1.10281 1.43857 1.01303 1.03221 0.97420 1.94515 0.95661 1.94284 1.52178 1.94569 1.70056 1.20121 1.54093 1.21441 1.03556 0.88844 0.96296 1.21338 0.91198 0.99887 0.90660 1.31583 1.07479 1.21018 1.13236 1.01696 0.72907 0.73207 0.72598 1.93545 1.61670 1.53684 1.86140 1.93489 1.55494 1.86449 1.59733 1.57376 1.24118 1.72915 1.27652 1.22448 0.81038 0.99216 1.00577 1.21225 0.98691 0.91602 0.85550 1.44139 1.11235 1.70183 1.07388 1.19477 1.18172 1.06908 0.94427 0.91396 1.25671 1.02879 0.94745 1.00645 1.70066 1.36062 1.08266 1.43392 0.85430 0.78766 0.76750 0.79955 1.20718 1.22397 1.20445 1.21529 0.86350 0.95210 0.97003 1.22162 0.97267 0.96217 0.86179 0.87936 0.86973 0.86657 0.81331 0.79601 0.79127 0.90840 0.87681 0.90634 0.96348 0.94043 0.96363 0.90945 0.90066 0.87346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.68 8.08 71.23 0.58 -4.10 16 2 C 0.03 0.73 5.87 -19.87 -0.12 0.61 16 3 C -0.09 -2.06 9.23 22.27 0.21 -1.86 16 4 C 0.00 -0.07 6.85 36.37 0.25 0.18 16 5 N 0.02 0.61 4.45 -46.46 -0.21 0.40 16 6 O -0.15 -3.88 18.45 18.89 0.35 -3.53 16 7 O -0.18 -5.16 18.45 18.88 0.35 -4.81 16 8 C -0.08 -1.58 9.56 22.27 0.21 -1.37 16 9 C -0.01 -0.22 9.55 22.27 0.21 -0.01 16 10 C -0.65 -15.13 5.92 22.27 0.13 -15.00 16 11 S 2.71 68.82 5.19 -56.49 -0.29 68.53 16 12 O -0.96 -25.60 15.71 -128.00 -2.01 -27.61 16 13 O -0.96 -27.28 14.12 -128.00 -1.81 -29.09 16 14 N -0.98 -27.38 3.26 -511.45 -1.67 -29.04 16 15 C 0.09 2.90 5.68 86.41 0.49 3.39 16 16 C 0.16 6.29 5.01 86.41 0.43 6.72 16 17 N -0.61 -26.44 2.97 -697.38 -2.07 -28.51 16 18 C -0.26 -12.85 9.60 84.04 0.81 -12.05 16 19 H 0.07 3.28 7.87 -2.91 -0.02 3.26 16 20 C -0.04 -2.23 4.99 84.86 0.42 -1.81 16 21 N -0.93 -50.16 11.00 21.65 0.24 -49.92 16 22 Si 0.96 41.92 29.58 68.60 2.03 43.95 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.13 4.37 6.70 86.56 0.58 4.95 16 27 C 0.11 2.95 6.56 86.56 0.57 3.52 16 28 H 0.10 2.73 4.48 -2.38 -0.01 2.72 16 29 H 0.11 2.07 8.11 -2.39 -0.02 2.06 16 30 H 0.12 2.78 3.23 -2.38 -0.01 2.78 16 31 H 0.17 3.65 7.61 -2.91 -0.02 3.63 16 32 H 0.19 2.56 7.61 -2.92 -0.02 2.54 16 33 H 0.19 2.62 7.34 -2.91 -0.02 2.60 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.11 2.83 4.49 -2.39 -0.01 2.82 16 36 H 0.08 3.54 5.88 -2.39 -0.01 3.53 16 37 H 0.02 0.77 5.91 -2.38 -0.01 0.76 16 38 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 39 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 40 H 0.07 2.41 7.93 -2.39 -0.02 2.40 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.11 2.34 7.13 -2.39 -0.02 2.32 16 Total: -1.00 -63.23 348.43 0.77 -62.46 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.09 Total: 13.99 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 4.77 Total: -16.81 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.71 Total: -107.07 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -3.12 Total: -65.05 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 68.82 SS G_CDS: -0.29 Total: 68.53 kcal Total: -63.23 0.77 -62.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.585 kcal (2) G-P(sol) polarization free energy of solvation -63.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds