Wall clock time and date at job start Tue Mar 31 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37982 * 119.92891 * 2 1 4 4 C 1.39553 * 119.85254 * 180.29257 * 3 2 1 5 5 C 1.47842 * 120.14308 * 179.69318 * 4 3 2 6 6 O 1.21555 * 119.99779 * 48.70179 * 5 4 3 7 7 N 1.34780 * 120.00024 * 228.69256 * 5 4 3 8 8 C 1.46497 * 120.00073 * 356.77584 * 7 5 4 9 9 C 1.50701 * 109.47058 * 265.77225 * 8 7 5 10 10 H 1.07994 * 119.99853 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99984 * 180.02562 * 9 8 7 12 12 N 1.31505 * 120.00170 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99765 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46944 * 90.00370 * 13 11 9 15 15 H 1.48500 * 109.46950 * 210.00052 * 13 11 9 16 16 H 1.48494 * 109.47221 * 330.00313 * 13 11 9 17 17 C 1.46496 * 119.99920 * 176.76837 * 7 5 4 18 18 C 1.50706 * 109.46998 * 90.00502 * 17 7 5 19 19 C 1.38227 * 119.61432 * 94.97948 * 18 17 7 20 20 C 1.38634 * 119.15539 * 179.79441 * 19 18 17 21 21 C 1.38672 * 118.42133 * 0.46844 * 20 19 18 22 22 C 1.38177 * 119.16232 * 359.50930 * 21 20 19 23 23 N 1.31855 * 119.61544 * 274.99903 * 18 17 7 24 24 C 1.39602 * 119.70805 * 359.42820 * 4 3 2 25 25 C 1.37932 * 119.85635 * 0.27085 * 24 4 3 26 26 C 1.38339 * 119.92880 * 179.69234 * 2 1 3 27 27 N 1.48017 * 119.84978 * 0.02562 * 26 2 1 28 28 O 1.21808 * 119.99719 * 173.68154 * 27 26 2 29 29 O 1.21802 * 120.00372 * 353.68443 * 27 26 2 30 30 H 1.09003 * 109.47215 * 263.15395 * 1 2 3 31 31 H 1.08999 * 109.47253 * 23.15528 * 1 2 3 32 32 H 1.09002 * 109.46858 * 143.15994 * 1 2 3 33 33 H 1.07995 * 120.06910 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47118 * 25.77096 * 8 7 5 35 35 H 1.09002 * 109.46828 * 145.76984 * 8 7 5 36 36 H 0.96998 * 120.00593 * 179.97438 * 12 11 9 37 37 H 1.09004 * 109.46980 * 330.00708 * 17 7 5 38 38 H 1.08996 * 109.47204 * 210.00773 * 17 7 5 39 39 H 1.07990 * 120.42366 * 359.97438 * 19 18 17 40 40 H 1.07997 * 120.78911 * 180.23649 * 20 19 18 41 41 H 1.08001 * 120.42037 * 179.78580 * 21 20 19 42 42 H 1.08005 * 119.61919 * 180.25554 * 22 21 20 43 43 H 1.07999 * 120.06822 * 180.29420 * 24 4 3 44 44 H 1.07997 * 119.92927 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1958 0.0000 4 6 3.5909 1.1940 -0.0062 5 6 4.3350 2.4715 -0.0131 6 8 4.0440 3.3485 0.7767 7 7 5.3361 2.6635 -0.8948 8 6 5.7337 1.5814 -1.7988 9 6 6.8780 0.8130 -1.1896 10 1 7.2701 1.1021 -0.2257 11 6 7.4251 -0.2585 -1.8632 12 7 8.4240 -0.9287 -1.3319 13 14 6.7472 -0.7580 -3.5308 14 1 7.4779 -0.0312 -4.6000 15 1 6.9220 -2.2207 -3.7181 16 1 5.3031 -0.4191 -3.5998 17 6 6.0264 3.9545 -0.9495 18 6 7.2004 3.9367 -0.0046 19 6 8.4568 3.6146 -0.4823 20 6 9.5308 3.6053 0.3943 21 6 9.2980 3.9122 1.7265 22 6 8.0143 4.2249 2.1310 23 7 7.0169 4.2283 1.2681 24 6 4.2812 -0.0194 -0.0002 25 6 3.5809 -1.2078 0.0061 26 6 2.1972 -1.1989 0.0064 27 7 1.4522 -2.4779 0.0127 28 8 2.0517 -3.5324 -0.0977 29 8 0.2396 -2.4759 0.1283 30 1 -0.3634 -0.1225 1.0204 31 1 -0.3634 0.9449 -0.4041 32 1 -0.3633 -0.8225 -0.6162 33 1 1.6554 2.1311 0.0004 34 1 4.8889 0.9109 -1.9565 35 1 6.0466 2.0027 -2.7542 36 1 8.8086 -1.6827 -1.8056 37 1 5.3376 4.7475 -0.6582 38 1 6.3798 4.1349 -1.9647 39 1 8.6006 3.3760 -1.5257 40 1 10.5244 3.3612 0.0487 41 1 10.1106 3.9113 2.4379 42 1 7.8254 4.4691 3.1660 43 1 5.3612 -0.0276 -0.0002 44 1 4.1137 -2.1472 0.0111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069739453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:14 Heat of formation + Delta-G solvation = 38.001185 kcal Electronic energy + Delta-G solvation = -31797.118892 eV Core-core repulsion = 27490.483689 eV Total energy + Delta-G solvation = -4306.635203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09755 -40.34622 -39.59557 -38.27102 -36.51513 -35.56548 -33.31886 -32.75885 -32.09274 -31.87266 -31.18086 -28.53913 -27.72405 -26.94955 -25.49650 -23.20654 -23.07855 -22.54957 -22.17013 -21.62665 -19.34020 -18.68261 -18.46952 -17.46965 -17.38294 -16.84477 -16.49442 -16.01607 -15.70959 -15.51877 -15.17265 -14.68028 -14.53934 -14.08636 -13.82710 -13.75341 -13.37199 -13.27042 -12.94022 -12.91598 -12.77508 -12.58137 -12.45978 -12.30131 -12.02284 -11.75595 -11.43591 -11.27589 -11.21575 -11.12787 -10.98705 -10.85731 -10.57637 -10.47138 -9.90255 -9.66615 -9.40589 -9.27931 -9.04421 -8.97505 -8.86122 -8.58849 -8.06656 -6.46308 -4.49864 -0.07970 1.15548 1.38379 1.49471 1.58196 1.74420 2.92016 3.00698 3.09616 3.13935 3.39841 3.59904 4.05189 4.30118 4.46577 4.50659 4.65986 4.73361 4.82027 5.00312 5.12059 5.14106 5.19845 5.36076 5.42547 5.46770 5.53067 5.54635 5.69789 5.71307 5.81855 5.94234 6.02733 6.06058 6.08856 6.14466 6.15523 6.32117 6.39127 6.51956 6.58229 6.60483 6.78900 6.98176 7.09630 7.17164 7.76077 7.83094 8.11961 8.45138 8.50568 8.61458 9.10850 10.63839 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.010439 B = 0.004025 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.668750 B = 6954.019131 C = 8519.091836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.034 4.034 3 C -0.085 4.085 4 C -0.061 4.061 5 C 0.556 3.444 6 O -0.527 6.527 7 N -0.578 5.578 8 C 0.197 3.803 9 C -0.549 4.549 10 H 0.085 0.915 11 C 0.087 3.913 12 N -0.875 5.875 13 Si 0.860 3.140 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.263 1.263 17 C 0.174 3.826 18 C 0.116 3.884 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.176 4.176 22 C 0.086 3.914 23 N -0.461 5.461 24 C -0.083 4.083 25 C -0.061 4.061 26 C -0.041 4.041 27 N 0.035 4.965 28 O -0.170 6.170 29 O -0.168 6.168 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.148 0.852 34 H 0.039 0.961 35 H 0.034 0.966 36 H 0.270 0.730 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.196 0.804 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.741 6.457 0.054 8.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.036 4.036 3 C -0.104 4.104 4 C -0.064 4.064 5 C 0.343 3.657 6 O -0.404 6.404 7 N -0.308 5.308 8 C 0.076 3.924 9 C -0.586 4.586 10 H 0.103 0.897 11 C -0.120 4.120 12 N -0.511 5.511 13 Si 0.686 3.314 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.188 1.188 17 C 0.050 3.950 18 C -0.023 4.023 19 C -0.144 4.144 20 C -0.105 4.105 21 C -0.196 4.196 22 C -0.072 4.072 23 N -0.170 5.170 24 C -0.101 4.101 25 C -0.080 4.080 26 C -0.124 4.124 27 N 0.550 4.450 28 O -0.383 6.383 29 O -0.380 6.380 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.165 0.835 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.153 0.847 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.164 0.836 43 H 0.213 0.787 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.255 7.566 0.696 9.238 hybrid contribution 0.828 -1.302 -1.183 1.944 sum -4.427 6.264 -0.487 7.686 Atomic orbital electron populations 1.21235 0.88579 1.04125 1.04298 1.19646 0.97786 0.90160 0.95985 1.21056 0.92542 0.97318 0.99478 1.20491 0.93904 0.94949 0.97084 1.18069 0.80381 0.86148 0.81138 1.90804 1.67936 1.43579 1.38079 1.47801 1.32123 1.14121 1.36748 1.20113 0.96999 0.85727 0.89524 1.21289 1.16164 1.13712 1.07458 0.89675 1.24835 0.94231 0.95705 0.97202 1.69862 1.23053 1.19733 1.38409 0.87080 0.80335 0.78963 0.84996 1.19653 1.20477 1.18794 1.20156 0.91407 0.86354 0.97040 1.21456 0.94117 0.95269 0.91501 1.21927 0.92977 0.97845 1.01638 1.21490 0.99478 0.96178 0.93334 1.22048 0.98603 1.02155 0.96785 1.22609 0.88604 0.96963 0.99010 1.67527 1.34359 1.12496 1.02663 1.22788 1.05178 0.88876 0.93275 1.21117 0.90282 1.01349 0.95214 1.21177 0.92521 0.82832 1.15893 1.43651 1.00998 1.02983 0.97360 1.94545 1.70437 1.19788 1.53575 1.94424 0.96591 1.93868 1.53165 0.89653 0.91030 0.88636 0.83460 0.94320 0.94810 0.91951 0.88968 0.89051 0.84698 0.85347 0.85596 0.83606 0.78741 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.66 36.01 0.31 -1.13 16 2 C -0.03 -0.49 5.87 -104.68 -0.61 -1.11 16 3 C -0.08 -1.25 9.34 -39.18 -0.37 -1.62 16 4 C -0.06 -1.06 4.87 -104.97 -0.51 -1.57 16 5 C 0.56 10.54 7.23 -12.33 -0.09 10.45 16 6 O -0.53 -11.02 16.64 5.32 0.09 -10.93 16 7 N -0.58 -10.55 2.44 -177.55 -0.43 -10.98 16 8 C 0.20 3.79 3.78 -5.19 -0.02 3.77 16 9 C -0.55 -12.23 6.45 -34.44 -0.22 -12.45 16 10 H 0.09 2.19 7.40 -52.49 -0.39 1.80 16 11 C 0.09 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.88 -22.53 13.96 55.43 0.77 -21.76 16 13 Si 0.86 17.98 27.47 -169.99 -4.67 13.31 16 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 16 H -0.26 -5.29 6.54 56.52 0.37 -4.92 16 17 C 0.17 2.85 5.73 -5.19 -0.03 2.82 16 18 C 0.12 2.04 5.91 -82.58 -0.49 1.55 16 19 C -0.12 -2.04 8.80 -39.44 -0.35 -2.39 16 20 C -0.08 -1.20 10.18 -39.27 -0.40 -1.60 16 21 C -0.18 -2.52 10.11 -39.44 -0.40 -2.92 16 22 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 23 N -0.46 -8.53 10.27 -9.47 -0.10 -8.62 16 24 C -0.08 -1.49 7.61 -39.18 -0.30 -1.79 16 25 C -0.06 -1.01 9.54 -39.64 -0.38 -1.39 16 26 C -0.04 -0.66 6.84 -79.86 -0.55 -1.20 16 27 N 0.03 0.58 4.45 34.01 0.15 0.73 16 28 O -0.17 -3.00 18.45 -29.46 -0.54 -3.54 16 29 O -0.17 -2.66 15.34 -29.46 -0.45 -3.11 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 32 H 0.10 1.14 5.86 -51.93 -0.30 0.84 16 33 H 0.15 1.89 8.05 -52.49 -0.42 1.46 16 34 H 0.04 0.75 4.73 -51.93 -0.25 0.51 16 35 H 0.03 0.62 7.38 -51.93 -0.38 0.24 16 36 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 37 H 0.09 1.50 7.47 -51.93 -0.39 1.11 16 38 H 0.09 1.24 7.83 -51.93 -0.41 0.83 16 39 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 43 H 0.20 3.97 4.69 -52.49 -0.25 3.72 16 44 H 0.16 2.48 7.61 -52.49 -0.40 2.08 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -28.30 375.10 -9.10 -37.40 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.88 Total: 9.32 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -4.69 Total: -7.47 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.39 Total: -40.63 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.91 Total: -17.58 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -4.67 Total: 13.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.30 -9.10 -37.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.403 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds