Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 120.00120 * 2 1 4 4 H 1.48493 * 109.47258 * 274.98210 * 3 2 1 5 5 H 1.48494 * 109.47267 * 34.98817 * 3 2 1 6 6 H 1.48506 * 109.46965 * 154.98618 * 3 2 1 7 7 C 1.39990 * 119.99660 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99629 * 147.62681 * 7 2 1 9 9 C 1.41064 * 119.99791 * 327.62583 * 7 2 1 10 10 C 1.40911 * 120.15673 * 157.86329 * 9 7 2 11 11 C 1.36326 * 119.83750 * 180.02562 * 10 9 7 12 12 C 1.39566 * 120.16054 * 0.02562 * 11 10 9 13 13 N 1.38948 * 119.83895 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00060 * 37.90993 * 13 12 11 15 15 O 1.21393 * 119.99760 * 356.68060 * 14 13 12 16 16 C 1.49265 * 119.99936 * 176.68735 * 14 13 12 17 17 O 1.21372 * 120.00228 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99515 * 180.02562 * 16 14 13 19 19 C 1.46511 * 119.99842 * 179.97438 * 18 16 14 20 20 C 1.50696 * 109.47016 * 179.97438 * 19 18 16 21 21 C 1.38261 * 119.99745 * 259.72366 * 20 19 18 22 22 C 1.38208 * 119.99504 * 179.74558 * 21 20 19 23 23 C 1.38253 * 120.00513 * 0.55426 * 22 21 20 24 24 C 1.38213 * 119.99694 * 359.69673 * 23 22 21 25 25 C 1.38209 * 120.00078 * 80.00034 * 20 19 18 26 26 C 1.50703 * 120.00290 * 359.97438 * 25 20 19 27 27 O 1.42894 * 109.47441 * 180.02562 * 26 25 20 28 28 C 1.39573 * 120.32329 * 0.23117 * 12 11 10 29 29 C 1.36325 * 120.16358 * 359.48169 * 28 12 11 30 30 H 0.96998 * 119.99720 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.08147 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.92171 * 179.97438 * 11 10 9 33 33 H 0.97001 * 119.99604 * 217.90338 * 13 12 11 34 34 H 0.96996 * 120.00432 * 359.72005 * 18 16 14 35 35 H 1.08999 * 109.46594 * 299.99498 * 19 18 16 36 36 H 1.08999 * 109.47095 * 59.99202 * 19 18 16 37 37 H 1.08003 * 119.99877 * 359.97438 * 21 20 19 38 38 H 1.08004 * 120.00035 * 180.27393 * 22 21 20 39 39 H 1.08001 * 120.00232 * 179.72830 * 23 22 21 40 40 H 1.08000 * 119.99929 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.46748 * 300.00343 * 26 25 20 42 42 H 1.08998 * 109.46716 * 59.99665 * 26 25 20 43 43 H 0.96696 * 114.00387 * 180.02562 * 27 26 25 44 44 H 1.07999 * 119.91854 * 179.74868 * 28 12 11 45 45 H 1.07996 * 120.08740 * 180.25602 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3845 2.1071 -1.3947 5 1 1.4965 2.6199 0.8028 6 1 3.5886 1.4119 0.5920 7 6 2.0081 -1.2124 0.0005 8 1 2.9622 -1.2853 -0.5002 9 6 1.4671 -2.3387 0.6552 10 6 1.8841 -3.6354 0.2941 11 6 1.3567 -4.7194 0.9307 12 6 0.4055 -4.5472 1.9374 13 7 -0.1282 -5.6567 2.5815 14 6 0.6572 -6.7155 2.8621 15 8 1.8155 -6.7252 2.4989 16 6 0.1027 -7.8762 3.6192 17 8 -1.0553 -7.8664 3.9826 18 7 0.8883 -8.9347 3.9002 19 6 0.3442 -10.0738 4.6439 20 6 1.4183 -11.1153 4.8239 21 6 1.4508 -12.2246 3.9993 22 6 2.4390 -13.1772 4.1611 23 6 3.3883 -13.0266 5.1548 24 6 3.3528 -11.9203 5.9826 25 6 2.3676 -10.9646 5.8171 26 6 2.3288 -9.7583 6.7197 27 8 3.4054 -9.8296 7.6566 28 6 -0.0163 -3.2662 2.2967 29 6 0.5067 -2.1727 1.6729 30 1 -0.4849 0.8400 -0.0004 31 1 2.6192 -3.7702 -0.4856 32 1 1.6750 -5.7139 0.6548 33 1 -1.0659 -5.6692 2.8293 34 1 1.8128 -8.9440 3.6069 35 1 -0.0035 -9.7373 5.6206 36 1 -0.4899 -10.5045 4.0898 37 1 0.7061 -12.3448 3.2263 38 1 2.4671 -14.0415 3.5140 39 1 4.1579 -13.7732 5.2840 40 1 4.0945 -11.8025 6.7586 41 1 2.4283 -8.8531 6.1207 42 1 1.3804 -9.7364 7.2563 43 1 3.4421 -9.0839 8.2711 44 1 -0.7557 -3.1407 3.0738 45 1 0.1825 -1.1818 1.9547 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069813804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = -71.291359 kcal Electronic energy + Delta-G solvation = -29327.189024 eV Core-core repulsion = 25081.240452 eV Total energy + Delta-G solvation = -4245.948572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.69692 -39.94204 -38.62724 -37.18186 -36.97360 -35.50245 -34.50382 -33.09476 -32.07126 -31.52302 -29.66514 -29.22649 -27.39388 -26.28827 -25.40151 -23.50262 -22.30221 -21.56643 -21.12139 -20.76299 -19.86703 -18.45933 -17.80490 -17.45402 -16.96746 -16.69638 -16.06370 -15.91119 -15.58280 -15.31471 -15.26241 -15.16638 -14.89106 -14.16113 -14.12939 -13.99215 -13.86383 -13.32230 -13.14993 -12.81541 -12.74642 -12.68397 -12.47352 -12.19506 -12.07910 -11.54834 -11.43893 -11.38469 -11.21355 -11.18978 -10.97357 -10.71375 -10.60910 -10.19765 -9.84155 -9.51655 -9.41455 -9.25475 -9.07800 -8.96694 -8.79108 -7.63442 -7.25446 -6.97734 -4.35758 0.83223 1.04838 1.55515 2.53461 2.70604 2.98993 3.01605 3.04871 3.13886 3.41158 3.55405 3.75278 3.82811 4.01723 4.26085 4.42206 4.44369 4.63780 4.73245 4.79733 4.88023 5.00688 5.07384 5.20527 5.27938 5.41163 5.58891 5.59993 5.72492 6.02137 6.09042 6.13396 6.17964 6.23021 6.32053 6.61849 6.64313 6.78693 6.91099 7.01838 7.07719 7.18617 7.22452 7.46919 7.53644 7.69227 7.86497 7.93827 8.15038 8.16514 8.43524 8.54239 8.74893 8.89200 9.92867 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.001798 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.510947 B =15573.321708 C =15849.677643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.087 3.913 3 Si 0.898 3.102 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.460 4.460 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.226 4.226 11 C -0.060 4.060 12 C -0.037 4.037 13 N -0.607 5.607 14 C 0.484 3.516 15 O -0.518 6.518 16 C 0.512 3.488 17 O -0.525 6.525 18 N -0.702 5.702 19 C 0.158 3.842 20 C -0.108 4.108 21 C -0.097 4.097 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.099 4.099 25 C -0.071 4.071 26 C 0.112 3.888 27 O -0.570 6.570 28 C -0.093 4.093 29 C -0.172 4.172 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.406 0.594 34 H 0.415 0.585 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.386 0.614 44 H 0.092 0.908 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -19.374 11.329 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.487 4.487 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.246 4.246 11 C -0.079 4.079 12 C -0.129 4.129 13 N -0.251 5.251 14 C 0.265 3.735 15 O -0.395 6.395 16 C 0.293 3.707 17 O -0.401 6.401 18 N -0.357 5.357 19 C 0.035 3.965 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.141 4.141 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.072 4.072 26 C 0.035 3.965 27 O -0.376 6.376 28 C -0.113 4.113 29 C -0.192 4.192 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.242 0.758 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.233 0.767 44 H 0.110 0.890 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.432 -19.782 11.009 22.684 hybrid contribution 0.062 1.218 0.247 1.244 sum 1.494 -18.564 11.256 21.761 Atomic orbital electron populations 1.69918 1.08157 1.30128 1.30367 1.25999 0.94400 1.01693 0.91487 0.86470 0.81518 0.80609 0.79298 1.19370 1.19802 1.18000 1.19560 1.05335 0.93714 1.30095 0.89809 1.17625 0.89509 0.91889 0.89729 1.20580 1.07232 0.92232 1.04510 1.20288 0.95992 0.98064 0.93600 1.17028 1.08386 0.84499 1.02984 1.42609 1.12586 1.14922 1.54960 1.19849 0.86554 0.84540 0.82526 1.90759 1.16812 1.79645 1.52322 1.20448 0.85963 0.83824 0.80471 1.90743 1.16866 1.80347 1.52174 1.45831 1.16142 1.17232 1.56456 1.20262 0.94346 0.84361 0.97491 1.19535 0.97268 0.96845 0.97186 1.21052 0.98672 0.93499 0.98305 1.21188 0.95126 0.99296 0.98458 1.21273 0.98682 0.97800 0.95329 1.21024 0.98141 0.93152 0.99339 1.19611 0.95530 0.96192 0.95818 1.20957 0.89770 0.95618 0.90204 1.86388 1.51485 1.50595 1.49150 1.20186 1.00291 0.91362 0.99489 1.20624 1.02622 0.96667 0.99288 0.90390 0.88552 0.87917 0.75842 0.74869 0.90162 0.89912 0.85455 0.85731 0.85805 0.84795 0.91682 0.91982 0.76650 0.88984 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.80 11.78 55.55 0.65 -18.14 16 2 C 0.09 2.09 4.77 -17.32 -0.08 2.01 16 3 Si 0.90 17.71 29.66 -169.99 -5.04 12.67 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.82 8.94 -37.85 -0.34 -12.16 16 8 H 0.08 2.08 8.02 -52.49 -0.42 1.66 16 9 C 0.12 3.01 5.57 -106.80 -0.60 2.42 16 10 C -0.23 -5.60 9.74 -39.26 -0.38 -5.99 16 11 C -0.06 -1.41 8.59 -39.77 -0.34 -1.75 16 12 C -0.04 -0.82 6.25 -83.64 -0.52 -1.34 16 13 N -0.61 -11.28 5.28 -10.20 -0.05 -11.33 16 14 C 0.48 8.58 7.69 -11.67 -0.09 8.49 16 15 O -0.52 -10.37 14.09 5.46 0.08 -10.29 16 16 C 0.51 7.51 7.88 -11.67 -0.09 7.41 16 17 O -0.53 -8.41 16.48 5.48 0.09 -8.32 16 18 N -0.70 -8.15 5.34 -61.96 -0.33 -8.48 16 19 C 0.16 1.49 5.21 -5.19 -0.03 1.47 16 20 C -0.11 -0.97 5.25 -104.63 -0.55 -1.52 16 21 C -0.10 -0.79 9.67 -39.58 -0.38 -1.17 16 22 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 23 C -0.11 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.10 -0.91 9.38 -39.58 -0.37 -1.28 16 25 C -0.07 -0.67 5.88 -104.62 -0.62 -1.28 16 26 C 0.11 0.95 6.28 36.01 0.23 1.18 16 27 O -0.57 -4.69 12.14 -35.23 -0.43 -5.12 16 28 C -0.09 -2.11 9.90 -39.77 -0.39 -2.51 16 29 C -0.17 -4.31 8.74 -39.26 -0.34 -4.66 16 30 H 0.29 6.29 8.30 -40.82 -0.34 5.96 16 31 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 32 H 0.10 2.35 6.46 -52.49 -0.34 2.01 16 33 H 0.41 6.66 8.29 -40.82 -0.34 6.32 16 34 H 0.41 4.78 7.93 -40.82 -0.32 4.45 16 35 H 0.08 0.73 7.06 -51.93 -0.37 0.37 16 36 H 0.08 0.75 8.00 -51.93 -0.42 0.34 16 37 H 0.13 0.85 8.03 -52.48 -0.42 0.43 16 38 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 1.22 7.01 -52.49 -0.37 0.85 16 41 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 42 H 0.06 0.46 7.55 -51.93 -0.39 0.07 16 43 H 0.39 1.58 9.12 45.56 0.42 2.00 16 44 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 45 H 0.11 2.75 6.53 -52.49 -0.34 2.40 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -30.54 388.38 -9.43 -39.96 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -4.55 Total: 16.50 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -5.70 Total: -13.30 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.27 Total: -37.95 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.26 Total: -23.74 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.04 Total: 12.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.54 -9.43 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069813804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.327 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds