Wall clock time and date at job start Tue Mar 31 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46508 * 119.99710 * 2 1 4 4 C 1.50702 * 109.46975 * 270.00238 * 3 2 1 5 5 H 1.07997 * 120.00206 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99605 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00236 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99821 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47308 * 89.99673 * 8 6 4 10 10 H 1.48499 * 109.47126 * 209.99852 * 8 6 4 11 11 H 1.48497 * 109.46952 * 330.00000 * 8 6 4 12 12 C 1.34772 * 120.00226 * 180.02562 * 2 1 3 13 13 O 1.21590 * 120.00222 * 184.85365 * 12 2 1 14 14 C 1.47610 * 120.00129 * 4.85174 * 12 2 1 15 15 C 1.39708 * 120.09480 * 140.59846 * 14 12 2 16 16 C 1.37799 * 119.95251 * 180.08404 * 15 14 12 17 17 Br 1.89097 * 119.87156 * 180.02562 * 16 15 14 18 18 C 1.39087 * 120.25457 * 0.02562 * 16 15 14 19 19 C 1.39223 * 120.04100 * 359.85562 * 18 16 15 20 20 C 1.38317 * 119.96696 * 0.19045 * 19 18 16 21 21 O 1.36153 * 120.76164 * 180.21624 * 19 18 16 22 22 C 1.43164 * 116.69871 * 342.74408 * 21 19 18 23 23 C 1.53471 * 108.22961 * 46.21140 * 22 21 19 24 24 O 1.35973 * 119.23970 * 179.65163 * 18 16 15 25 25 H 1.08996 * 109.46682 * 265.76426 * 1 2 3 26 26 H 1.08997 * 109.47128 * 25.76790 * 1 2 3 27 27 H 1.08998 * 109.46582 * 145.77269 * 1 2 3 28 28 H 1.08997 * 109.47164 * 30.00032 * 3 2 1 29 29 H 1.08994 * 109.46652 * 150.00337 * 3 2 1 30 30 H 0.97000 * 119.99670 * 180.02562 * 7 6 4 31 31 H 1.07993 * 120.02284 * 0.05453 * 15 14 12 32 32 H 1.08004 * 120.00750 * 179.90977 * 20 19 18 33 33 H 1.08999 * 109.71578 * 165.89831 * 22 21 19 34 34 H 1.09003 * 109.71432 * 286.53292 * 22 21 19 35 35 H 1.09001 * 109.70625 * 180.51660 * 23 22 21 36 36 H 1.08995 * 109.74719 * 59.91368 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1268 2.8776 -1.6727 7 7 3.5541 3.6177 -0.6731 8 14 3.4386 3.4166 -3.4339 9 1 2.3090 4.2597 -3.9010 10 1 4.6992 4.1991 -3.4962 11 1 3.5557 2.2193 -4.3046 12 6 2.1389 -1.1671 -0.0005 13 8 3.3516 -1.1691 0.0886 14 6 1.4049 -2.4432 -0.1092 15 6 1.9202 -3.4838 -0.8860 16 6 1.2317 -4.6732 -0.9868 17 35 1.9317 -6.0804 -2.0382 18 6 0.0239 -4.8426 -0.3182 19 6 -0.4931 -3.8099 0.4593 20 6 0.1930 -2.6134 0.5635 21 8 -1.6719 -3.9614 1.1236 22 6 -2.5176 -5.0347 0.6965 23 6 -1.6533 -6.2930 0.5383 24 8 -0.6417 -6.0222 -0.4378 25 1 -0.3632 -0.0759 1.0248 26 1 -0.3633 0.9254 -0.4467 27 1 -0.3632 -0.8497 -0.5780 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1385 0.5138 30 1 4.0309 4.4437 -0.8504 31 1 2.8573 -3.3560 -1.4074 32 1 -0.2083 -1.8113 1.1653 33 1 -3.2919 -5.2120 1.4429 34 1 -2.9779 -4.7824 -0.2588 35 1 -2.2732 -7.1250 0.2041 36 1 -1.1871 -6.5418 1.4915 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069842056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:00 Heat of formation + Delta-G solvation = -61.294635 kcal Electronic energy + Delta-G solvation = -23254.543609 eV Core-core repulsion = 19558.616236 eV Total energy + Delta-G solvation = -3695.927374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.025 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.57919 -39.48646 -37.60163 -37.25587 -34.98628 -32.84819 -32.12019 -31.54943 -29.48755 -28.91349 -27.67531 -26.14146 -25.20375 -23.37907 -22.62560 -21.34832 -19.46490 -18.55122 -17.79886 -17.22453 -16.54834 -16.31271 -15.67891 -15.34936 -15.29972 -14.79844 -14.58422 -14.41267 -14.39246 -13.78841 -13.71181 -13.27094 -12.56821 -12.43666 -12.21994 -12.13387 -11.77486 -11.69866 -11.40662 -11.22394 -10.93412 -10.75887 -10.63292 -10.47972 -10.32810 -10.18306 -9.66576 -9.15939 -8.64512 -8.45151 -8.32219 -7.71917 -6.06132 -4.11336 0.72183 0.98121 1.47455 2.60225 2.82951 3.10039 3.30161 3.37019 3.41129 3.62497 3.85638 3.96744 4.35895 4.43367 4.44636 4.52539 4.79166 4.82328 5.01142 5.08439 5.14635 5.28617 5.34783 5.57896 5.66240 5.71871 5.85933 6.14994 6.18671 6.22929 6.49775 6.99146 7.03695 7.39794 7.46975 7.89876 8.19657 8.29311 8.82694 8.98503 9.53945 11.01958 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.003369 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.774060 B = 8310.129869 C = 9669.457500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.591 5.591 3 C 0.244 3.756 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.551 3.449 13 O -0.530 6.530 14 C -0.105 4.105 15 C -0.035 4.035 16 C -0.096 4.096 17 Br -0.030 7.030 18 C 0.088 3.912 19 C 0.047 3.953 20 C -0.074 4.074 21 O -0.300 6.300 22 C 0.019 3.981 23 C 0.019 3.981 24 O -0.293 6.293 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 -21.849 2.065 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.322 5.322 3 C 0.125 3.875 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.337 3.663 13 O -0.407 6.407 14 C -0.109 4.109 15 C -0.056 4.056 16 C -0.176 4.176 17 Br 0.056 6.944 18 C 0.040 3.960 19 C 0.001 3.999 20 C -0.094 4.094 21 O -0.215 6.215 22 C -0.056 4.056 23 C -0.057 4.057 24 O -0.206 6.206 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.788 -22.201 1.778 25.683 hybrid contribution -0.321 0.540 -0.701 0.942 sum -13.108 -21.661 1.077 25.341 Atomic orbital electron populations 1.21998 0.81440 1.03300 1.00095 1.48088 1.06277 1.07559 1.70268 1.19389 0.92763 0.77587 0.97739 1.21434 1.36769 1.06470 0.92186 0.92321 1.24930 0.95239 0.96337 0.97497 1.69932 1.38247 1.14303 1.30765 0.86488 0.77701 0.78642 0.84567 1.20618 1.21042 1.19817 1.17843 0.87090 0.82941 0.78430 1.90789 1.13197 1.86821 1.49931 1.19974 0.95069 0.96093 0.99780 1.21001 0.99133 0.89124 0.96307 1.20837 0.95395 0.96154 1.05193 1.96689 1.84849 1.45229 1.67671 1.18558 0.92331 0.85769 0.99323 1.18538 0.88633 0.93680 0.99042 1.21109 0.93648 0.95023 0.99578 1.86365 1.27587 1.51116 1.56446 1.23665 0.92696 0.86180 1.03069 1.23710 0.90011 0.98647 0.93327 1.86383 1.49644 1.33763 1.50841 0.93298 0.90355 0.91914 0.94633 0.93413 0.92650 0.83049 0.82713 0.85821 0.90208 0.85772 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 8.88 59.85 0.53 1.73 16 2 N -0.59 -12.53 2.86 -184.16 -0.53 -13.06 16 3 C 0.24 6.32 5.18 -5.19 -0.03 6.29 16 4 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.55 11.74 7.34 -12.44 -0.09 11.65 16 13 O -0.53 -13.44 16.47 5.29 0.09 -13.35 16 14 C -0.10 -1.76 5.23 -104.99 -0.55 -2.31 16 15 C -0.03 -0.55 9.35 -39.19 -0.37 -0.92 16 16 C -0.10 -1.35 6.23 -39.43 -0.25 -1.60 16 17 Br -0.03 -0.38 33.09 -68.01 -2.25 -2.63 16 18 C 0.09 1.15 6.50 -38.90 -0.25 0.90 16 19 C 0.05 0.60 6.48 -39.19 -0.25 0.35 16 20 C -0.07 -1.04 7.46 -39.02 -0.29 -1.34 16 21 O -0.30 -3.26 10.42 -32.99 -0.34 -3.60 16 22 C 0.02 0.13 7.26 37.40 0.27 0.40 16 23 C 0.02 0.13 7.26 37.40 0.27 0.40 16 24 O -0.29 -3.25 9.68 -32.42 -0.31 -3.56 16 25 H 0.05 0.64 6.90 -51.93 -0.36 0.29 16 26 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 27 H 0.06 0.89 5.80 -51.93 -0.30 0.59 16 28 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.15 2.44 8.05 -52.49 -0.42 2.02 16 32 H 0.16 1.98 5.32 -52.48 -0.28 1.70 16 33 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -33.64 326.90 -7.94 -41.58 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -3.82 Total: -3.41 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.42 Total: 2.00 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.21 Total: -38.66 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.57 Total: -20.52 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.25 Total: -2.63 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.64 -7.94 -41.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069842056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.714 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds