Wall clock time and date at job start Tue Mar 31 2020 05:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21585 * 120.00300 * 0.02562 * 13 12 2 15 15 C 1.47613 * 119.99912 * 180.02562 * 13 12 2 16 16 C 1.39708 * 120.09645 * 359.97438 * 15 13 12 17 17 C 1.37800 * 119.95619 * 180.02562 * 16 15 13 18 18 Br 1.89104 * 119.87013 * 180.02562 * 17 16 15 19 19 C 1.39078 * 120.25356 * 359.97438 * 17 16 15 20 20 C 1.39230 * 120.04190 * 359.90092 * 19 17 16 21 21 C 1.38309 * 119.96804 * 359.88586 * 20 19 17 22 22 O 1.36152 * 120.76305 * 180.23218 * 20 19 17 23 23 C 1.43168 * 116.69182 * 342.67776 * 22 20 19 24 24 C 1.53465 * 108.22186 * 46.24869 * 23 22 20 25 25 O 1.35988 * 119.24300 * 179.66465 * 19 17 16 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.07997 * 120.02216 * 0.04021 * 16 15 13 32 32 H 1.08002 * 120.01486 * 180.19326 * 21 20 19 33 33 H 1.08998 * 109.71088 * 165.93409 * 23 22 20 34 34 H 1.09003 * 109.70959 * 286.56555 * 23 22 20 35 35 H 1.08997 * 109.70701 * 59.90431 * 24 23 22 36 36 H 1.09007 * 109.70347 * 180.51689 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8582 1.1618 -2.4116 15 6 2.6385 -0.7139 -3.5626 16 6 2.9714 -2.0694 -3.5022 17 6 3.4305 -2.7161 -4.6292 18 35 3.8797 -4.5510 -4.5449 19 6 3.5637 -2.0246 -5.8285 20 6 3.2309 -0.6743 -5.8952 21 6 2.7655 -0.0209 -4.7685 22 8 3.3512 0.0157 -7.0628 23 6 4.1696 -0.5755 -8.0778 24 6 3.7932 -2.0587 -8.1943 25 8 4.0251 -2.6813 -6.9262 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 2.8688 -2.6102 -2.5730 32 1 2.5042 1.0257 -4.8202 33 1 3.9929 -0.0755 -9.0301 34 1 5.2203 -0.4833 -7.8029 35 1 2.7406 -2.1509 -8.4620 36 1 4.4099 -2.5357 -8.9561 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069842061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:51 Heat of formation + Delta-G solvation = -77.734727 kcal Electronic energy + Delta-G solvation = -22909.794841 eV Core-core repulsion = 19213.154571 eV Total energy + Delta-G solvation = -3696.640270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.025 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57838 -39.36412 -37.61690 -37.32154 -34.87123 -32.57834 -32.26483 -31.56385 -29.48230 -29.30111 -28.18703 -25.39735 -25.23632 -23.31708 -22.02531 -20.88500 -19.56900 -19.05682 -17.94710 -17.62578 -16.81187 -15.82180 -15.65857 -15.43927 -15.22073 -14.73789 -14.56991 -14.28343 -14.10528 -13.97791 -13.58326 -13.34603 -12.73957 -12.46734 -12.07204 -11.87445 -11.72044 -11.40192 -11.11258 -10.97162 -10.86476 -10.77099 -10.55060 -10.39096 -10.32628 -10.23541 -9.26413 -9.06956 -8.70763 -8.56591 -8.40343 -7.95221 -6.12813 -4.22375 0.65716 0.91378 1.43122 2.58462 2.81368 2.99424 3.26606 3.31771 3.33062 3.83639 3.95887 3.96715 4.33170 4.36428 4.43185 4.51940 4.76962 4.94612 5.01685 5.05857 5.13514 5.19734 5.36142 5.70020 5.76176 6.09627 6.19949 6.48816 6.82026 6.95101 7.01518 7.12934 7.38998 7.52700 7.67518 7.89309 8.13124 8.58294 8.74424 9.01583 9.44821 10.93189 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.003213 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.174367 B = 8711.338918 C =10334.481039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.698 5.698 13 C 0.547 3.453 14 O -0.545 6.545 15 C -0.110 4.110 16 C -0.055 4.055 17 C -0.096 4.096 18 Br -0.029 7.029 19 C 0.091 3.909 20 C 0.047 3.953 21 C -0.042 4.042 22 O -0.300 6.300 23 C 0.019 3.981 24 C 0.019 3.981 25 O -0.292 6.292 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.016 0.984 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -9.727 -22.082 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.346 5.346 13 C 0.332 3.668 14 O -0.425 6.425 15 C -0.115 4.115 16 C -0.076 4.076 17 C -0.176 4.176 18 Br 0.057 6.943 19 C 0.043 3.957 20 C 0.001 3.999 21 C -0.062 4.062 22 O -0.214 6.214 23 C -0.057 4.057 24 C -0.057 4.057 25 O -0.206 6.206 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.142 0.858 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.615 -9.448 -21.949 24.794 hybrid contribution 0.403 -0.572 0.562 0.898 sum 7.018 -10.019 -21.387 24.638 Atomic orbital electron populations 1.22090 0.98233 0.99275 1.01052 1.18815 0.91170 0.94078 0.79631 0.93054 1.21171 1.32668 1.13348 0.90258 0.92011 1.24879 0.94751 0.94928 0.99045 1.69892 1.35726 1.22371 1.24051 0.86497 0.79207 0.79608 0.81737 1.21135 1.20101 1.20128 1.46511 1.64205 1.13583 1.10300 1.17879 0.79158 0.86754 0.83040 1.90756 1.51453 1.15352 1.84926 1.20036 1.03174 0.93294 0.94968 1.21175 0.95580 0.93663 0.97168 1.20835 1.10177 0.92526 0.94071 1.96710 1.92534 1.06300 1.98790 1.18580 0.99845 0.89497 0.87810 1.18559 1.04745 0.88732 0.87874 1.20643 0.96263 1.01334 0.87962 1.86385 1.66953 1.46166 1.21937 1.23675 0.95520 0.94077 0.92387 1.23721 1.03559 0.93864 0.84545 1.86384 1.74789 1.46530 1.12887 0.95343 0.89005 0.96520 0.92470 0.77766 0.83378 0.82715 0.85768 0.90210 0.90077 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.68 2.56 -69.09 -0.18 6.50 16 3 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -14.07 8.73 -34.44 -0.30 -14.37 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.70 -14.53 5.02 -55.95 -0.28 -14.81 16 13 C 0.55 11.10 7.73 -12.43 -0.10 11.00 16 14 O -0.55 -13.00 16.00 5.29 0.08 -12.91 16 15 C -0.11 -1.78 5.87 -104.99 -0.62 -2.40 16 16 C -0.06 -0.77 9.26 -39.19 -0.36 -1.14 16 17 C -0.10 -1.27 6.23 -39.43 -0.25 -1.52 16 18 Br -0.03 -0.34 33.09 -68.01 -2.25 -2.59 16 19 C 0.09 1.17 6.50 -38.90 -0.25 0.91 16 20 C 0.05 0.62 6.48 -39.19 -0.25 0.36 16 21 C -0.04 -0.63 9.50 -39.02 -0.37 -1.00 16 22 O -0.30 -3.45 10.42 -32.98 -0.34 -3.80 16 23 C 0.02 0.13 7.26 37.40 0.27 0.40 16 24 C 0.02 0.13 7.26 37.40 0.27 0.40 16 25 O -0.29 -3.19 9.69 -32.46 -0.31 -3.51 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 6.96 6.56 -40.82 -0.27 6.69 16 31 H 0.15 1.88 6.39 -52.49 -0.34 1.55 16 32 H 0.16 2.36 7.64 -52.49 -0.40 1.96 16 33 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 327.47 15.07 4.93 4.93 Total: -1.00 -31.37 327.47 -8.24 -39.61 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.79 Total: 4.10 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.88 Total: -2.45 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.35 Total: -38.88 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.57 Total: -20.21 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.25 Total: -2.59 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.37 -8.24 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069842061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.128 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds