Wall clock time and date at job start Tue Mar 31 2020 05:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31352 * 1 3 3 Si 1.86799 * 119.99823 * 2 1 4 4 H 1.48506 * 109.47114 * 184.73318 * 3 2 1 5 5 H 1.48500 * 109.47168 * 304.73258 * 3 2 1 6 6 H 1.48494 * 109.47384 * 64.73133 * 3 2 1 7 7 C 1.39016 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00355 * 14.80655 * 7 2 1 9 9 N 1.36858 * 119.99928 * 195.07888 * 7 2 1 10 10 C 1.34779 * 119.99939 * 228.05782 * 9 7 2 11 11 O 1.21568 * 119.99874 * 176.33947 * 10 9 7 12 12 C 1.47871 * 120.00081 * 356.33817 * 10 9 7 13 13 N 1.32888 * 119.74033 * 5.74381 * 12 10 9 14 14 C 1.31566 * 121.62144 * 179.97438 * 13 12 10 15 15 Cl 1.73602 * 119.53865 * 180.02562 * 14 13 12 16 16 C 1.38800 * 120.92069 * 0.02562 * 14 13 12 17 17 C 1.38497 * 119.37964 * 359.97438 * 16 14 13 18 18 C 1.38790 * 118.50453 * 359.73440 * 17 16 14 19 19 Cl 1.73605 * 120.47192 * 180.28340 * 18 17 16 20 20 C 1.39708 * 120.00176 * 48.05892 * 9 7 2 21 21 C 1.39011 * 120.06836 * 186.23417 * 20 9 7 22 22 C 1.38071 * 119.96911 * 179.69795 * 21 20 9 23 23 C 1.38295 * 120.10098 * 0.60109 * 22 21 20 24 24 C 1.38517 * 120.13829 * 359.67762 * 23 22 21 25 25 F 1.35101 * 119.98758 * 180.02562 * 24 23 22 26 26 C 1.38328 * 120.02766 * 0.02562 * 24 23 22 27 27 H 0.96999 * 119.99534 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.31159 * 180.02562 * 16 14 13 29 29 H 1.08003 * 120.74588 * 179.97438 * 17 16 14 30 30 H 1.08005 * 120.01311 * 359.97438 * 21 20 9 31 31 H 1.07993 * 119.94549 * 180.27843 * 22 21 20 32 32 H 1.08001 * 119.92880 * 179.69763 * 23 22 21 33 33 H 1.07994 * 120.04959 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7034 1.3488 -0.1155 5 1 1.8041 2.4453 -1.1506 6 1 1.9774 2.3453 1.2660 7 6 2.0086 -1.2039 -0.0005 8 1 1.4956 -2.1237 -0.2400 9 7 3.3419 -1.2244 0.3078 10 6 4.2056 -1.8946 -0.4805 11 8 5.3976 -1.8579 -0.2447 12 6 3.7033 -2.6744 -1.6320 13 7 2.4151 -2.6195 -1.9539 14 6 1.9287 -3.2975 -2.9710 15 17 0.2369 -3.1854 -3.3437 16 6 2.7494 -4.1012 -3.7503 17 6 4.0987 -4.1877 -3.4503 18 6 4.5865 -3.4572 -2.3757 19 17 6.2705 -3.5222 -1.9589 20 6 3.8076 -0.5507 1.4396 21 6 5.1731 -0.4607 1.6840 22 6 5.6313 0.2109 2.7999 23 6 4.7334 0.7840 3.6819 24 6 3.3716 0.6920 3.4457 25 9 2.4971 1.2534 4.3091 26 6 2.9066 0.0257 2.3262 27 1 -0.4849 -0.8401 -0.0004 28 1 2.3397 -4.6532 -4.5833 29 1 4.7572 -4.8066 -4.0417 30 1 5.8754 -0.9123 0.9988 31 1 6.6924 0.2844 2.9869 32 1 5.0947 1.3045 4.5564 33 1 1.8450 -0.0459 2.1415 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069872265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:05 Heat of formation + Delta-G solvation = 24.924527 kcal Electronic energy + Delta-G solvation = -26605.845421 eV Core-core repulsion = 22407.218903 eV Total energy + Delta-G solvation = -4198.626517 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 354.008 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.29611 -40.72649 -39.54909 -37.42726 -36.57532 -36.22091 -35.34076 -32.63718 -32.26554 -30.92698 -29.96740 -29.04100 -25.28450 -24.54425 -23.50324 -22.20944 -21.67545 -19.99709 -18.95913 -17.58478 -17.03783 -16.31048 -16.25520 -15.88142 -15.54663 -15.40979 -14.98583 -14.89174 -14.47867 -14.18942 -13.83831 -13.49377 -13.43866 -13.13125 -12.70435 -12.53309 -12.34916 -12.17832 -11.93392 -11.83688 -11.18424 -11.05509 -11.02114 -10.80219 -10.46632 -10.28429 -10.06344 -9.84991 -9.76855 -9.08879 -8.75998 -8.69414 -8.45936 -8.11133 -7.44727 -6.83980 -4.34166 0.53312 1.03899 1.80989 1.85073 1.86026 2.28107 3.06557 3.28129 3.31151 3.42975 3.63180 3.93981 4.11169 4.36714 4.43686 4.72854 4.76406 4.86937 4.96681 5.04747 5.36636 5.46386 5.56752 5.62065 5.77950 6.01264 6.06162 6.16077 6.32680 6.59795 6.75301 7.04051 7.07082 7.22418 7.72403 7.76374 7.87738 8.27533 8.65731 8.83369 9.29975 10.39310 Molecular weight = 354.01amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.005244 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.214023 B = 5337.995665 C = 7271.565680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.044 3.956 3 Si 1.026 2.974 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.409 4.409 8 H 0.124 0.876 9 N -0.367 5.367 10 C 0.517 3.483 11 O -0.535 6.535 12 C 0.132 3.868 13 N -0.378 5.378 14 C 0.162 3.838 15 Cl -0.025 7.025 16 C -0.141 4.141 17 C -0.072 4.072 18 C -0.051 4.051 19 Cl -0.019 7.019 20 C 0.186 3.814 21 C -0.191 4.191 22 C -0.079 4.079 23 C -0.202 4.202 24 C 0.112 3.888 25 F -0.145 7.145 26 C -0.197 4.197 27 H 0.282 0.718 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.189 0.811 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 -6.678 -5.225 10.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.169 4.169 3 Si 0.852 3.148 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.537 4.537 8 H 0.141 0.859 9 N -0.073 5.073 10 C 0.309 3.691 11 O -0.418 6.418 12 C -0.007 4.007 13 N -0.091 5.091 14 C -0.005 4.005 15 Cl 0.004 6.996 16 C -0.163 4.163 17 C -0.098 4.098 18 C -0.082 4.082 19 Cl 0.010 6.990 20 C 0.088 3.912 21 C -0.211 4.211 22 C -0.097 4.097 23 C -0.222 4.222 24 C 0.092 3.908 25 F -0.124 7.124 26 C -0.218 4.218 27 H 0.094 0.906 28 H 0.167 0.833 29 H 0.172 0.828 30 H 0.205 0.795 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.380 -4.522 -4.626 9.086 hybrid contribution 0.034 -1.956 -0.413 1.999 sum 6.414 -6.478 -5.039 10.416 Atomic orbital electron populations 1.70741 1.06211 1.31511 1.39275 1.26338 0.96306 1.01432 0.92783 0.84192 0.76482 0.75946 0.78161 1.19535 1.21029 1.19601 1.21055 0.81926 0.98371 1.52333 0.85921 1.41401 1.08930 1.40289 1.16649 1.18126 0.85099 0.83526 0.82303 1.90377 1.15201 1.65455 1.70806 1.20894 0.87502 0.95861 0.96445 1.68539 1.12379 1.15857 1.12309 1.22137 0.88677 0.95847 0.93846 1.98413 1.11635 1.97106 1.92468 1.21963 0.92911 1.00399 1.00985 1.21383 0.95139 0.97957 0.95367 1.22050 0.88583 0.99819 0.97704 1.98401 1.10975 1.96945 1.92680 1.18092 0.92345 0.93737 0.86989 1.22935 0.95623 1.02202 1.00328 1.20882 0.98866 0.96224 0.93771 1.20936 0.91361 1.07120 1.02775 1.17370 0.86896 0.97401 0.89123 1.91444 1.69276 1.83200 1.68478 1.21113 1.02576 1.03252 0.94824 0.90632 0.83259 0.82832 0.79524 0.85669 0.85886 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.60 13.69 55.50 0.76 -21.84 16 2 C 0.04 1.14 3.91 -17.47 -0.07 1.07 16 3 Si 1.03 24.72 24.67 -169.99 -4.19 20.52 16 4 H -0.27 -6.49 6.27 56.52 0.35 -6.14 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.45 7.08 56.52 0.40 -6.05 16 7 C -0.41 -10.15 7.11 -15.02 -0.11 -10.25 16 8 H 0.12 3.17 6.29 -52.48 -0.33 2.84 16 9 N -0.37 -8.67 2.25 -59.98 -0.13 -8.80 16 10 C 0.52 11.42 7.55 -12.32 -0.09 11.33 16 11 O -0.54 -11.49 10.35 5.31 0.05 -11.44 16 12 C 0.13 2.62 6.66 -83.00 -0.55 2.06 16 13 N -0.38 -7.59 6.37 -6.93 -0.04 -7.64 16 14 C 0.16 2.66 7.27 -17.46 -0.13 2.53 16 15 Cl -0.02 -0.39 29.10 -51.86 -1.51 -1.89 16 16 C -0.14 -1.75 9.88 -39.28 -0.39 -2.14 16 17 C -0.07 -0.89 9.97 -39.28 -0.39 -1.28 16 18 C -0.05 -0.82 6.37 -38.91 -0.25 -1.07 16 19 Cl -0.02 -0.30 26.05 -51.86 -1.35 -1.65 16 20 C 0.19 4.22 4.22 -83.73 -0.35 3.87 16 21 C -0.19 -3.91 9.05 -39.36 -0.36 -4.27 16 22 C -0.08 -1.37 10.04 -39.62 -0.40 -1.76 16 23 C -0.20 -3.57 10.02 -39.46 -0.40 -3.97 16 24 C 0.11 2.30 7.30 -39.45 -0.29 2.01 16 25 F -0.15 -2.95 17.27 2.25 0.04 -2.91 16 26 C -0.20 -4.45 6.16 -39.30 -0.24 -4.70 16 27 H 0.28 7.40 8.73 -40.82 -0.36 7.05 16 28 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.19 3.88 4.52 -56.33 -0.25 3.62 16 31 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.16 3.83 5.40 -52.49 -0.28 3.55 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -27.10 312.87 -7.43 -34.53 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -1.76 Total: 2.96 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -4.01 Total: -6.56 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.58 Total: -38.28 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.05 Total: -11.44 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -4.19 Total: 20.52 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -2.86 Total: -3.54 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.10 -7.43 -34.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069872265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.453 kcal (2) G-P(sol) polarization free energy of solvation -27.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds