Wall clock time and date at job start Tue Mar 31 2020 05:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45191 * 109.46846 * 2 1 4 4 C 1.34558 * 117.00248 * 179.97438 * 3 2 1 5 5 O 1.21277 * 119.99636 * 0.02562 * 4 3 2 6 6 C 1.49283 * 120.00511 * 180.02562 * 4 3 2 7 7 O 1.21379 * 119.99878 * 0.02562 * 6 4 3 8 8 N 1.34778 * 120.00262 * 180.02562 * 6 4 3 9 9 C 1.38224 * 120.00311 * 185.98484 * 8 6 4 10 10 C 1.38730 * 126.10479 * 29.99068 * 9 8 6 11 11 C 1.43197 * 126.81765 * 0.03039 * 10 9 8 12 12 N 5.97936 * 103.95811 * 20.90521 * 2 1 3 13 13 C 1.47367 * 106.36559 * 180.02562 * 10 9 8 14 14 C 1.40848 * 126.46850 * 180.02562 * 13 10 9 15 15 H 1.08003 * 119.99659 * 359.97438 * 14 13 10 16 16 C 1.40009 * 120.00432 * 179.97438 * 14 13 10 17 17 N 1.30805 * 119.99885 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00428 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46893 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47298 * 119.99934 * 18 16 14 21 21 H 1.48501 * 109.47128 * 240.00048 * 18 16 14 22 22 N 1.32809 * 107.06587 * 359.74830 * 13 10 9 23 23 N 1.36171 * 126.11086 * 210.02482 * 9 8 6 24 24 C 1.39780 * 125.18349 * 359.94913 * 23 9 8 25 25 C 1.38978 * 120.07321 * 139.70951 * 24 23 9 26 26 C 1.38074 * 119.91750 * 179.97438 * 25 24 23 27 27 C 1.38312 * 120.08201 * 359.97438 * 26 25 24 28 28 C 1.38315 * 120.15474 * 0.02562 * 27 26 25 29 29 C 1.38068 * 120.08252 * 359.97438 * 28 27 26 30 30 H 1.09012 * 109.46937 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47736 * 299.99898 * 1 2 3 32 32 H 1.08999 * 109.46957 * 60.00529 * 1 2 3 33 33 H 1.08993 * 109.47245 * 240.00121 * 2 1 3 34 34 H 1.09000 * 109.46591 * 120.00152 * 2 1 3 35 35 H 0.97001 * 119.99421 * 5.98330 * 8 6 4 36 36 H 0.97001 * 120.00248 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.04157 * 359.97438 * 25 24 23 38 38 H 1.07999 * 119.96049 * 180.02562 * 26 25 24 39 39 H 1.08001 * 119.92133 * 179.72562 * 27 26 25 40 40 H 1.08002 * 119.95693 * 179.97438 * 28 27 26 41 41 H 1.08002 * 120.04402 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3479 1.5453 0.0005 5 8 4.0867 0.5836 0.0005 6 6 3.9185 2.9248 0.0011 7 8 3.1791 3.8874 0.0016 8 7 5.2547 3.1015 0.0012 9 6 5.7839 4.3722 0.1265 10 6 5.2078 5.4340 0.8087 11 6 3.9614 5.4261 1.5136 12 7 2.9724 5.4208 2.0706 13 6 6.1333 6.5716 0.6640 14 6 5.9602 7.8645 1.1954 15 1 5.0782 8.0970 1.7737 16 6 6.9314 8.8483 0.9738 17 7 7.9999 8.5666 0.2737 18 14 6.7016 10.5631 1.6779 19 1 5.4193 10.6238 2.4245 20 1 7.8253 10.8757 2.5969 21 1 6.6769 11.5533 0.5715 22 7 7.1643 6.1460 -0.0569 23 7 6.9634 4.8057 -0.3980 24 6 7.8420 4.0271 -1.1566 25 6 8.4769 4.5737 -2.2655 26 6 9.3445 3.8018 -3.0123 27 6 9.5826 2.4863 -2.6578 28 6 8.9525 1.9390 -1.5548 29 6 8.0836 2.7049 -0.8033 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 5.8449 2.3367 -0.0868 36 1 8.6730 9.2481 0.1205 37 1 8.2918 5.6010 -2.5427 38 1 9.8386 4.2260 -3.8739 39 1 10.2584 1.8835 -3.2464 40 1 9.1404 0.9113 -1.2811 41 1 7.5922 2.2771 0.0580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071770371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:39 Heat of formation + Delta-G solvation = 31.952729 kcal Electronic energy + Delta-G solvation = -30524.469072 eV Core-core repulsion = 26179.457155 eV Total energy + Delta-G solvation = -4345.011916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.116 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39563 -40.42829 -39.12846 -38.19641 -37.15069 -35.28871 -34.92271 -33.77515 -32.25084 -32.02377 -30.83146 -29.00044 -28.58405 -26.32212 -25.91108 -23.60378 -22.83085 -22.42370 -21.35648 -20.50519 -20.42172 -18.97183 -18.02443 -17.77602 -17.12562 -16.87997 -16.47083 -15.94959 -15.68094 -15.46465 -15.01494 -14.82540 -14.45809 -14.10232 -13.95119 -13.76353 -13.53811 -13.25463 -13.13035 -12.96215 -12.63001 -12.30201 -12.17826 -12.00033 -11.91113 -11.86124 -11.62877 -11.44085 -11.34878 -11.17265 -10.99821 -10.89360 -10.80778 -10.53147 -10.17167 -10.05263 -9.70151 -9.03919 -8.85735 -8.76491 -7.74508 -7.33020 -6.71590 -4.70019 0.77456 1.27773 1.46056 1.54572 2.32443 2.93302 2.97737 3.06569 3.11633 3.17927 3.57728 3.72656 3.84822 3.95668 3.97925 4.15113 4.58307 4.60495 4.61827 4.92127 4.95141 5.02606 5.19891 5.27299 5.30700 5.36498 5.47385 5.48203 5.63046 5.63812 5.69497 5.80712 5.93440 6.04372 6.09018 6.31898 6.47349 6.63189 6.66366 6.84002 6.93797 6.99807 7.12975 7.28766 7.58612 7.97531 8.19595 8.47927 8.75862 8.79431 9.36673 10.23113 Molecular weight = 354.12amu Principal moments of inertia in cm(-1) A = 0.008197 B = 0.004042 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.156757 B = 6926.051660 C =10053.878779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.059 3.941 3 O -0.323 6.323 4 C 0.473 3.527 5 O -0.482 6.482 6 C 0.521 3.479 7 O -0.435 6.435 8 N -0.621 5.621 9 C 0.324 3.676 10 C -0.199 4.199 11 C 0.326 3.674 12 N -0.475 5.475 13 C 0.258 3.742 14 C -0.421 4.421 15 H 0.091 0.909 16 C 0.073 3.927 17 N -0.751 5.751 18 Si 0.916 3.084 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.273 1.273 22 N -0.308 5.308 23 N -0.348 5.348 24 C 0.187 3.813 25 C -0.109 4.109 26 C -0.098 4.098 27 C -0.143 4.143 28 C -0.095 4.095 29 C -0.162 4.162 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.279 0.721 37 H 0.138 0.862 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -15.271 -5.428 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.015 4.015 3 O -0.237 6.237 4 C 0.311 3.689 5 O -0.369 6.369 6 C 0.301 3.699 7 O -0.302 6.302 8 N -0.275 5.275 9 C 0.104 3.896 10 C -0.218 4.218 11 C 0.014 3.986 12 N -0.156 5.156 13 C 0.107 3.893 14 C -0.460 4.460 15 H 0.109 0.891 16 C -0.150 4.150 17 N -0.377 5.377 18 Si 0.740 3.260 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.198 1.198 22 N -0.137 5.137 23 N -0.122 5.122 24 C 0.092 3.908 25 C -0.129 4.129 26 C -0.117 4.117 27 C -0.162 4.162 28 C -0.114 4.114 29 C -0.183 4.183 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.156 0.844 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.576 -14.630 -5.204 15.608 hybrid contribution 0.045 -0.148 0.321 0.357 sum -1.531 -14.778 -4.883 15.639 Atomic orbital electron populations 1.21826 0.91945 1.03131 1.04169 1.23267 0.96003 0.79130 1.03092 1.86661 1.21666 1.33082 1.82312 1.22989 0.82173 0.90008 0.73768 1.90820 1.60460 1.42344 1.43324 1.18788 0.82739 0.87810 0.80590 1.90951 1.57954 1.39857 1.41484 1.42225 1.06287 1.07884 1.71094 1.17713 0.89971 0.84221 0.97697 1.16816 0.95620 0.96057 1.13323 1.24105 0.91036 0.92198 0.91246 1.80962 1.11309 1.09579 1.13723 1.20255 0.86445 0.91462 0.91165 1.18739 1.06049 0.91418 1.29833 0.89102 1.25906 0.94180 1.00982 0.93971 1.69860 1.06158 1.34709 1.26947 0.86110 0.79659 0.80854 0.79392 1.18244 1.19800 1.19786 1.79211 1.22000 0.82255 1.30242 1.46411 1.13269 1.11376 1.41174 1.17455 0.92615 0.89572 0.91141 1.21134 0.97478 1.01273 0.92980 1.21054 0.97318 0.93921 0.99397 1.21090 1.01292 0.95675 0.98142 1.20859 0.96034 0.99422 0.95083 1.20972 1.02323 0.93858 1.01191 0.89858 0.91052 0.91130 0.90581 0.90575 0.73983 0.90977 0.84422 0.85625 0.86076 0.85656 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.74 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.32 -4.47 10.08 -45.16 -0.46 -4.93 16 4 C 0.47 7.01 8.02 35.33 0.28 7.30 16 5 O -0.48 -6.91 16.27 -19.09 -0.31 -7.22 16 6 C 0.52 9.18 7.48 -11.66 -0.09 9.09 16 7 O -0.44 -9.21 12.65 -7.83 -0.10 -9.31 16 8 N -0.62 -10.61 5.20 -11.38 -0.06 -10.67 16 9 C 0.32 6.79 7.12 -152.60 -1.09 5.70 16 10 C -0.20 -4.76 5.89 -104.08 -0.61 -5.38 16 11 C 0.33 7.89 12.07 -22.51 -0.27 7.61 16 12 N -0.47 -11.64 17.96 41.80 0.75 -10.89 16 13 C 0.26 6.73 6.94 -82.74 -0.57 6.16 16 14 C -0.42 -10.98 9.26 -37.93 -0.35 -11.33 16 15 H 0.09 2.32 7.85 -52.48 -0.41 1.91 16 16 C 0.07 1.79 5.50 -17.33 -0.10 1.70 16 17 N -0.75 -19.03 11.95 55.55 0.66 -18.37 16 18 Si 0.92 18.47 29.56 -169.99 -5.02 13.45 16 19 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 N -0.31 -7.81 10.53 33.37 0.35 -7.46 16 23 N -0.35 -7.46 3.70 -9.42 -0.03 -7.50 16 24 C 0.19 3.35 6.26 -83.69 -0.52 2.82 16 25 C -0.11 -1.81 9.80 -39.37 -0.39 -2.19 16 26 C -0.10 -1.27 10.04 -39.61 -0.40 -1.67 16 27 C -0.14 -1.64 10.04 -39.53 -0.40 -2.03 16 28 C -0.10 -1.13 10.04 -39.62 -0.40 -1.52 16 29 C -0.16 -2.35 8.66 -39.37 -0.34 -2.69 16 30 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.07 0.56 8.14 -51.94 -0.42 0.14 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.42 5.99 5.38 -40.82 -0.22 5.77 16 36 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 37 H 0.14 2.50 8.06 -52.49 -0.42 2.08 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.56 6.23 -52.49 -0.33 1.23 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -31.45 373.50 -7.11 -38.56 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.90 Total: 5.10 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: -4.63 Total: 13.60 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 1.67 Total: -54.89 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.87 Total: -21.45 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.45 -7.11 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071770371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.514 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds