Wall clock time and date at job start Tue Mar 31 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 119.99976 * 2 1 4 4 O 1.21545 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.47872 * 119.99902 * 179.97438 * 3 2 1 6 6 C 1.39618 * 120.10754 * 353.59339 * 5 3 2 7 7 C 1.37985 * 120.00156 * 180.27348 * 6 5 3 8 8 C 1.38247 * 120.22790 * 359.97438 * 7 6 5 9 9 C 1.38985 * 120.21917 * 0.02562 * 8 7 6 10 10 N 1.39711 * 120.00117 * 180.02562 * 9 8 7 11 11 C 1.46504 * 120.00093 * 359.97438 * 10 9 8 12 12 C 1.52999 * 109.47264 * 180.02562 * 11 10 9 13 13 O 1.42894 * 109.47244 * 64.99642 * 12 11 10 14 14 C 1.35680 * 116.99979 * 180.02562 * 13 12 11 15 15 C 1.39308 * 119.81513 * 359.72273 * 14 13 12 16 16 C 1.36444 * 120.18201 * 179.76488 * 15 14 13 17 17 C 1.40825 * 119.80980 * 0.51395 * 16 15 14 18 18 C 1.41215 * 120.17617 * 179.72186 * 17 16 15 19 19 H 1.08006 * 119.99952 * 205.32388 * 18 17 16 20 20 C 1.39892 * 120.00247 * 25.32980 * 18 17 16 21 21 N 1.30874 * 119.99949 * 16.80359 * 20 18 17 22 22 Si 1.86803 * 119.99988 * 196.80552 * 20 18 17 23 23 H 1.48496 * 109.47151 * 59.99358 * 22 20 18 24 24 H 1.48496 * 109.46957 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46897 * 299.99657 * 22 20 18 26 26 C 1.40835 * 119.64252 * 359.73958 * 17 16 15 27 27 C 1.36429 * 119.81485 * 0.02562 * 26 17 16 28 28 C 1.38677 * 119.99235 * 359.97438 * 9 8 7 29 29 C 1.50699 * 120.11198 * 180.02562 * 28 9 8 30 30 H 1.09000 * 109.47073 * 299.99765 * 1 2 3 31 31 H 1.09005 * 109.47265 * 59.99877 * 1 2 3 32 32 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00258 * 180.02562 * 2 1 3 34 34 H 1.07999 * 119.99852 * 0.26881 * 6 5 3 35 35 H 1.07997 * 119.88328 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.88685 * 179.97438 * 8 7 6 37 37 H 0.97001 * 120.00151 * 179.97438 * 10 9 8 38 38 H 1.09006 * 109.46850 * 300.00243 * 11 10 9 39 39 H 1.08999 * 109.47223 * 60.00260 * 11 10 9 40 40 H 1.08999 * 109.47172 * 185.00054 * 12 11 10 41 41 H 1.09002 * 109.46463 * 304.99890 * 12 11 10 42 42 H 1.07998 * 119.91129 * 0.02562 * 15 14 13 43 43 H 1.07999 * 120.08989 * 180.25710 * 16 15 14 44 44 H 0.97005 * 120.00013 * 180.02562 * 21 20 18 45 45 H 1.07999 * 120.09230 * 179.97438 * 26 17 16 46 46 H 1.07996 * 119.91521 * 179.97438 * 27 26 17 47 47 H 1.08994 * 109.47557 * 263.14585 * 29 28 9 48 48 H 1.09003 * 109.47031 * 23.14612 * 29 28 9 49 49 H 1.09000 * 109.47186 * 143.13874 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6176 1.1672 0.0006 6 6 4.3178 -0.0331 0.1359 7 6 5.6977 -0.0299 0.1418 8 6 6.3915 1.1589 0.0135 9 6 5.7038 2.3591 -0.1217 10 7 6.4096 3.5578 -0.2516 11 6 7.8746 3.5498 -0.2446 12 6 8.3932 4.9808 -0.4003 13 8 8.0140 5.7518 0.7414 14 6 8.3981 7.0529 0.7613 15 6 9.1336 7.5743 -0.3007 16 6 9.5197 8.8829 -0.2907 17 6 9.1819 9.7041 0.8024 18 6 9.5826 11.0581 0.8235 19 1 9.7021 11.5712 1.7663 20 6 9.8246 11.7348 -0.3767 21 7 9.3768 11.2461 -1.5052 22 14 10.7871 13.3357 -0.3687 23 1 12.1429 13.0954 0.1875 24 1 10.9059 13.8488 -1.7571 25 1 10.0781 14.3353 0.4700 26 6 8.4427 9.1677 1.8744 27 6 8.0602 7.8584 1.8466 28 6 4.3171 2.3665 -0.1288 29 6 3.5687 3.6663 -0.2759 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9500 -0.8401 -0.0004 34 1 3.7795 -0.9640 0.2360 35 1 6.2374 -0.9594 0.2470 36 1 7.4715 1.1550 0.0193 37 1 5.9297 4.3954 -0.3463 38 1 8.2312 3.1350 0.6983 39 1 8.2386 2.9392 -1.0709 40 1 9.4799 4.9663 -0.4843 41 1 7.9653 5.4265 -1.2982 42 1 9.3954 6.9420 -1.1362 43 1 10.0863 9.2866 -1.1167 44 1 9.5449 11.7152 -2.3375 45 1 8.1801 9.7908 2.7165 46 1 7.4937 7.4453 2.6680 47 1 3.2772 4.0312 0.7089 48 1 4.2103 4.4021 -0.7608 49 1 2.6774 3.5057 -0.8824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071899611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:01 Heat of formation + Delta-G solvation = -23.946288 kcal Electronic energy + Delta-G solvation = -29544.837187 eV Core-core repulsion = 25436.774745 eV Total energy + Delta-G solvation = -4108.062441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.59726 -39.15397 -38.67137 -36.70368 -35.49059 -34.99342 -33.38368 -32.66289 -31.11577 -29.69630 -29.25204 -28.33870 -27.12645 -26.43725 -24.89040 -23.88723 -22.46675 -21.41611 -21.01470 -20.58254 -20.14086 -18.33894 -17.40873 -17.11317 -16.80809 -16.28140 -15.84722 -15.73798 -15.53809 -15.33023 -14.87530 -14.47848 -14.28635 -14.04484 -13.96712 -13.67037 -13.49669 -13.34294 -12.99071 -12.84151 -12.66415 -12.42858 -12.31353 -12.21088 -12.09858 -11.92829 -11.80606 -11.44279 -11.32156 -11.16671 -11.06607 -10.99530 -10.63272 -10.23798 -9.95747 -9.83295 -9.80307 -9.46176 -9.40248 -9.05340 -8.89377 -7.69417 -7.45183 -7.04891 -6.75034 -4.28840 0.77239 1.40088 2.74734 2.75717 2.89821 2.93311 3.06064 3.08802 3.19510 3.38401 3.76471 3.92896 3.97172 4.47854 4.59130 4.69119 4.78555 4.88085 4.90926 4.98926 5.16970 5.18333 5.27906 5.40558 5.47094 5.49102 5.59684 5.60611 5.64201 5.68696 5.81625 5.84859 6.02433 6.06479 6.11203 6.24095 6.24209 6.30128 6.41309 6.63377 6.67291 6.85555 7.03705 7.18545 7.23486 7.24795 7.37031 7.52265 7.66981 7.86351 7.96870 7.98810 8.11549 8.39410 8.61006 8.87285 8.95363 10.19898 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.001677 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.005438 B =16691.057479 C =17473.066733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.557 3.443 4 O -0.527 6.527 5 C -0.098 4.098 6 C -0.151 4.151 7 C -0.084 4.084 8 C -0.175 4.175 9 C 0.216 3.784 10 N -0.735 5.735 11 C 0.128 3.872 12 C 0.055 3.945 13 O -0.326 6.326 14 C -0.012 4.012 15 C -0.174 4.174 16 C -0.133 4.133 17 C 0.088 3.912 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.908 3.092 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.196 4.196 27 C -0.111 4.111 28 C -0.096 4.096 29 C -0.112 4.112 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.401 0.599 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.408 0.592 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.280 0.720 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.052 0.948 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -23.761 -1.048 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.345 3.655 4 O -0.405 6.405 5 C -0.102 4.102 6 C -0.172 4.172 7 C -0.103 4.103 8 C -0.199 4.199 9 C 0.110 3.890 10 N -0.366 5.366 11 C 0.004 3.996 12 C -0.022 4.022 13 O -0.242 6.242 14 C -0.055 4.055 15 C -0.193 4.193 16 C -0.153 4.153 17 C 0.086 3.914 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.427 5.427 22 Si 0.733 3.267 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.190 1.190 26 C -0.215 4.215 27 C -0.130 4.130 28 C -0.101 4.101 29 C -0.168 4.168 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.236 0.764 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.246 0.754 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.172 -23.013 -1.162 24.801 hybrid contribution 0.671 0.608 -0.367 0.977 sum -8.502 -22.405 -1.529 24.013 Atomic orbital electron populations 1.21533 0.79400 1.02154 1.02479 1.45729 1.07729 1.08734 1.76521 1.18407 0.87477 0.83558 0.76015 1.90746 1.70186 1.30666 1.48895 1.19375 0.91849 0.93709 1.05274 1.20865 0.94481 0.96194 1.05673 1.20733 0.93663 0.97454 0.98433 1.20803 0.99925 0.91189 1.07939 1.17590 0.90209 0.86969 0.94196 1.44863 1.05291 1.06495 1.79943 1.21446 0.80406 0.95917 1.01832 1.22657 0.99671 0.90089 0.89764 1.85839 1.75959 1.21142 1.41260 1.18538 1.06499 0.82483 0.97955 1.20603 1.03878 0.97310 0.97463 1.20942 1.02356 0.91314 1.00643 1.17603 0.89560 0.93295 0.90976 1.19450 1.40804 0.95767 0.93302 0.90514 1.25875 0.93778 0.99510 0.95045 1.69820 1.34715 1.38735 0.99450 0.86368 0.80927 0.81387 0.78030 1.18899 1.20413 1.19033 1.20608 1.05106 0.94295 1.01538 1.19610 1.03394 0.93649 0.96365 1.19472 0.91359 0.95489 1.03773 1.20875 1.00232 0.92527 1.03163 0.92117 0.92151 0.90698 0.76400 0.86420 0.85767 0.85707 0.75421 0.91256 0.90750 0.91429 0.92387 0.88812 0.86108 0.90921 0.88208 0.88564 0.90929 0.92933 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.70 59.85 0.64 1.19 16 2 N -0.73 -5.64 5.66 -68.04 -0.39 -6.02 16 3 C 0.56 6.44 7.70 -12.32 -0.09 6.35 16 4 O -0.53 -7.78 13.35 5.33 0.07 -7.71 16 5 C -0.10 -1.12 5.87 -104.99 -0.62 -1.73 16 6 C -0.15 -1.32 9.52 -39.16 -0.37 -1.69 16 7 C -0.08 -0.73 10.02 -39.67 -0.40 -1.13 16 8 C -0.18 -1.80 9.31 -39.30 -0.37 -2.17 16 9 C 0.22 2.64 6.63 -83.83 -0.56 2.08 16 10 N -0.74 -9.28 5.58 -58.66 -0.33 -9.61 16 11 C 0.13 1.48 5.29 -4.04 -0.02 1.46 16 12 C 0.05 0.79 4.86 37.16 0.18 0.98 16 13 O -0.33 -6.23 10.07 -18.74 -0.19 -6.42 16 14 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 15 C -0.17 -3.97 8.96 -39.83 -0.36 -4.32 16 16 C -0.13 -3.41 8.64 -39.25 -0.34 -3.74 16 17 C 0.09 2.33 5.57 -106.81 -0.59 1.74 16 18 C -0.46 -12.23 9.04 -37.83 -0.34 -12.57 16 19 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 20 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 21 N -0.80 -20.64 10.94 55.54 0.61 -20.03 16 22 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 C -0.20 -4.80 9.74 -39.25 -0.38 -5.19 16 27 C -0.11 -2.57 9.92 -39.83 -0.40 -2.96 16 28 C -0.10 -1.22 5.93 -104.01 -0.62 -1.84 16 29 C -0.11 -1.49 8.42 36.01 0.30 -1.18 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.40 1.93 6.90 -40.82 -0.28 1.65 16 34 H 0.12 0.64 6.45 -52.49 -0.34 0.31 16 35 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.13 1.10 6.71 -52.49 -0.35 0.75 16 37 H 0.41 5.55 6.32 -40.82 -0.26 5.29 16 38 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 39 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 40 H 0.07 0.93 7.64 -51.93 -0.40 0.53 16 41 H 0.06 0.85 7.66 -51.93 -0.40 0.46 16 42 H 0.09 1.88 6.27 -52.49 -0.33 1.55 16 43 H 0.12 3.18 6.17 -52.49 -0.32 2.86 16 44 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 45 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 46 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.05 0.66 6.21 -51.93 -0.32 0.34 16 49 H 0.09 1.30 5.89 -51.93 -0.31 0.99 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -30.91 399.58 -10.55 -41.46 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.64 Total: 12.20 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -4.68 Total: -23.48 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.10 Total: -35.66 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.12 Total: -14.12 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.91 -10.55 -41.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071899611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.510 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds