Wall clock time and date at job start Tue Mar 31 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46810 * 2 1 4 4 N 1.46499 * 109.46915 * 240.00194 * 2 1 3 5 5 C 1.37800 * 126.30418 * 61.03130 * 4 2 1 6 6 C 1.39082 * 133.86721 * 0.02562 * 5 4 2 7 7 C 1.36416 * 120.16156 * 179.97438 * 6 5 4 8 8 C 1.40194 * 120.44862 * 359.97438 * 7 6 5 9 9 C 1.47576 * 119.90948 * 180.02562 * 8 7 6 10 10 O 1.21609 * 119.99946 * 206.36302 * 9 8 7 11 11 N 1.34777 * 119.99904 * 26.36162 * 9 8 7 12 12 C 1.46497 * 119.99945 * 345.61265 * 11 9 8 13 13 C 1.36898 * 119.99563 * 165.60978 * 11 9 8 14 14 H 1.07998 * 120.00694 * 29.38956 * 13 11 9 15 15 C 1.39032 * 119.99728 * 209.38367 * 13 11 9 16 16 N 1.31378 * 119.99712 * 19.22040 * 15 13 11 17 17 Si 1.86793 * 120.00230 * 199.21345 * 15 13 11 18 18 H 1.48502 * 109.46983 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47039 * 120.00392 * 17 15 13 20 20 H 1.48495 * 109.47587 * 240.00360 * 17 15 13 21 21 C 1.39193 * 120.18038 * 0.03107 * 8 7 6 22 22 C 1.39401 * 119.50591 * 359.97438 * 21 8 7 23 23 N 1.35868 * 133.51397 * 180.02562 * 22 21 8 24 24 C 1.30069 * 109.55664 * 179.69376 * 23 22 21 25 25 C 1.50701 * 124.93424 * 180.28623 * 24 23 22 26 26 F 1.39907 * 109.47239 * 15.89635 * 25 24 23 27 27 F 1.39898 * 109.47435 * 135.89643 * 25 24 23 28 28 F 1.39900 * 109.47267 * 255.89569 * 25 24 23 29 29 H 1.09001 * 109.47243 * 294.78949 * 1 2 3 30 30 H 1.08995 * 109.47413 * 174.78881 * 1 2 3 31 31 H 1.09004 * 109.47373 * 54.78957 * 1 2 3 32 32 H 1.08998 * 109.47196 * 119.99774 * 2 1 3 33 33 H 1.08993 * 109.47537 * 60.00309 * 3 2 1 34 34 H 1.09007 * 109.46740 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47057 * 299.99859 * 3 2 1 36 36 H 1.08005 * 119.91906 * 359.97438 * 6 5 4 37 37 H 1.07993 * 119.77799 * 179.97438 * 7 6 5 38 38 H 1.09007 * 109.47021 * 53.53175 * 12 11 9 39 39 H 1.08994 * 109.47053 * 173.52950 * 12 11 9 40 40 H 1.08997 * 109.47042 * 293.53208 * 12 11 9 41 41 H 0.96998 * 120.00209 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.24398 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7831 -0.3234 -2.5034 6 6 1.0786 0.7165 -3.1005 7 6 1.0269 0.8176 -4.4600 8 6 1.6819 -0.1226 -5.2677 9 6 1.6187 -0.0016 -6.7371 10 8 1.7388 -0.9907 -7.4344 11 7 1.4278 1.2051 -7.3063 12 6 0.9725 2.3350 -6.4925 13 6 1.6595 1.3748 -8.6448 14 1 1.5276 0.5464 -9.3251 15 6 2.0645 2.6138 -9.1285 16 7 2.5848 3.5002 -8.3103 17 14 1.8691 3.0178 -10.9417 18 1 1.2613 1.8593 -11.6443 19 1 0.9895 4.2048 -11.0924 20 1 3.2008 3.3109 -11.5299 21 6 2.3917 -1.1700 -4.6874 22 6 2.4462 -1.2760 -3.2985 23 7 3.0387 -2.1564 -2.4501 24 6 2.7927 -1.8094 -1.2209 25 6 3.2893 -2.5423 -0.0014 26 9 4.3253 -3.4083 -0.3674 27 9 3.7628 -1.6190 0.9370 28 9 2.2407 -3.2800 0.5585 29 1 -0.3634 0.4309 0.9330 30 1 -0.3634 -1.0233 -0.0933 31 1 -0.3634 0.5925 -0.8397 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 0.5711 1.4459 -2.4865 37 1 0.4777 1.6273 -4.9171 38 1 1.6353 2.4560 -5.6356 39 1 0.9859 3.2442 -7.0935 40 1 -0.0423 2.1454 -6.1430 41 1 2.8677 4.3645 -8.6478 42 1 2.8963 -1.8951 -5.3087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071908830.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:57 Heat of formation + Delta-G solvation = -69.935579 kcal Electronic energy + Delta-G solvation = -32116.696900 eV Core-core repulsion = 27263.524467 eV Total energy + Delta-G solvation = -4853.172433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.59914 -48.15607 -48.02401 -42.46560 -39.13268 -36.82469 -36.22750 -34.92912 -32.00554 -31.72301 -30.42768 -29.89158 -27.73292 -27.51277 -26.17026 -25.08277 -23.36845 -22.51104 -21.94807 -20.61567 -19.75206 -19.00273 -18.91896 -18.22218 -17.32014 -17.17898 -16.54144 -15.82857 -15.36336 -15.12729 -14.87963 -14.85506 -14.69439 -14.61392 -14.48949 -14.38380 -14.19399 -14.16916 -13.85630 -13.63425 -13.57745 -13.48844 -12.86697 -12.80145 -12.71562 -12.42349 -11.98581 -11.88413 -11.73792 -11.51222 -11.47285 -11.34896 -11.17830 -10.63174 -10.50013 -10.39975 -10.28381 -10.01769 -9.08716 -8.63377 -8.37031 -8.06530 -7.66072 -6.47405 -4.00275 0.76748 1.35084 1.70934 2.34497 2.40250 3.07653 3.09727 3.20948 3.28175 3.56335 3.61370 3.92507 4.00627 4.07971 4.26798 4.37019 4.45266 4.55529 4.73428 4.91449 4.94922 5.05418 5.10029 5.18349 5.28290 5.28777 5.38044 5.47088 5.57733 5.71828 5.77374 5.86997 6.10134 6.14615 6.35262 6.43517 6.52417 6.68706 6.77362 6.86504 7.05162 7.47061 7.51177 8.08115 8.38269 9.04738 9.26027 9.84297 10.56075 Molecular weight = 355.12amu Principal moments of inertia in cm(-1) A = 0.019716 B = 0.002636 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.817012 B =10620.603513 C =11341.989993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 C -0.166 4.166 4 N -0.460 5.460 5 C 0.084 3.916 6 C -0.129 4.129 7 C -0.091 4.091 8 C -0.105 4.105 9 C 0.491 3.509 10 O -0.578 6.578 11 N -0.434 5.434 12 C 0.072 3.928 13 C -0.305 4.305 14 H 0.102 0.898 15 C 0.031 3.969 16 N -0.867 5.867 17 Si 0.925 3.075 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.006 4.006 22 C 0.032 3.968 23 N -0.421 5.421 24 C 0.164 3.836 25 C 0.563 3.437 26 F -0.147 7.147 27 F -0.168 7.168 28 F -0.165 7.165 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.173 0.827 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.036 0.964 41 H 0.270 0.730 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -1.419 21.255 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.022 3.978 3 C -0.224 4.224 4 N -0.151 5.151 5 C -0.026 4.026 6 C -0.150 4.150 7 C -0.110 4.110 8 C -0.111 4.111 9 C 0.281 3.719 10 O -0.462 6.462 11 N -0.151 5.151 12 C -0.071 4.071 13 C -0.433 4.433 14 H 0.119 0.881 15 C -0.173 4.173 16 N -0.505 5.505 17 Si 0.751 3.249 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.027 4.027 22 C -0.086 4.086 23 N -0.141 5.141 24 C -0.102 4.102 25 C 0.506 3.494 26 F -0.128 7.128 27 F -0.150 7.150 28 F -0.146 7.146 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.144 0.856 37 H 0.190 0.810 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.004 -2.344 20.747 21.095 hybrid contribution -0.251 0.929 -0.067 0.964 sum -3.255 -1.416 20.680 20.982 Atomic orbital electron populations 1.22229 0.92691 1.03674 1.03813 1.21674 0.96151 0.94729 0.85267 1.22222 1.02489 0.93782 1.03911 1.45078 1.41641 1.22302 1.06126 1.18972 1.01927 0.99149 0.82550 1.19706 1.02963 0.97564 0.94751 1.22529 0.97316 0.98804 0.92378 1.20141 0.99896 0.95587 0.95520 1.17957 0.83165 0.85016 0.85798 1.90624 1.55239 1.36663 1.63707 1.43341 1.55924 1.07238 1.08579 1.22309 0.94607 0.93819 0.96386 1.19715 1.43582 0.97876 0.82078 0.88058 1.25397 0.95081 0.96549 1.00290 1.69942 1.36768 1.07789 1.36008 0.85889 0.78192 0.78659 0.82185 1.18975 1.20485 1.20638 1.20332 0.96045 0.96501 0.89817 1.18761 1.01928 0.94080 0.93870 1.70207 1.20742 1.25807 0.97333 1.22547 1.01764 0.91641 0.94256 1.16652 0.75852 0.76871 0.80027 1.93289 1.58217 1.69910 1.91404 1.93224 1.88662 1.66111 1.66965 1.93273 1.57496 1.77771 1.86073 0.90086 0.91522 0.90943 0.87977 0.90062 0.91460 0.90858 0.85608 0.81028 0.92712 0.87596 0.94658 0.91980 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.21 37.16 0.34 -0.86 16 2 C 0.12 1.08 3.31 -67.93 -0.22 0.85 16 3 C -0.17 -1.26 9.23 37.16 0.34 -0.91 16 4 N -0.46 -5.83 2.65 -104.05 -0.28 -6.11 16 5 C 0.08 1.26 6.23 -83.94 -0.52 0.74 16 6 C -0.13 -1.77 8.77 -39.93 -0.35 -2.12 16 7 C -0.09 -1.48 7.79 -39.50 -0.31 -1.78 16 8 C -0.11 -2.12 5.74 -105.00 -0.60 -2.72 16 9 C 0.49 12.12 7.38 -12.45 -0.09 12.03 16 10 O -0.58 -16.19 16.39 5.27 0.09 -16.10 16 11 N -0.43 -10.76 2.97 -123.82 -0.37 -11.13 16 12 C 0.07 1.46 7.77 59.85 0.47 1.93 16 13 C -0.30 -8.21 9.19 -15.00 -0.14 -8.35 16 14 H 0.10 2.87 7.50 -52.49 -0.39 2.48 16 15 C 0.03 0.78 4.89 -17.45 -0.09 0.70 16 16 N -0.87 -22.08 11.12 55.50 0.62 -21.46 16 17 Si 0.92 19.78 29.59 -169.99 -5.03 14.75 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 C -0.01 -0.12 9.64 -38.79 -0.37 -0.49 16 22 C 0.03 0.57 7.22 -84.72 -0.61 -0.04 16 23 N -0.42 -7.26 11.05 -8.25 -0.09 -7.35 16 24 C 0.16 2.33 7.20 -154.81 -1.11 1.21 16 25 C 0.56 6.58 3.12 36.01 0.11 6.69 16 26 F -0.15 -1.86 17.13 2.25 0.04 -1.82 16 27 F -0.17 -1.70 15.44 2.25 0.03 -1.66 16 28 F -0.16 -1.79 17.30 2.25 0.04 -1.75 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.55 6.55 -51.93 -0.34 0.21 16 32 H 0.10 0.78 6.04 -51.93 -0.31 0.47 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 36 H 0.13 1.29 5.92 -52.48 -0.31 0.98 16 37 H 0.17 2.57 3.32 -53.08 -0.18 2.40 16 38 H 0.05 1.04 6.02 -51.93 -0.31 0.73 16 39 H 0.11 2.35 5.45 -51.93 -0.28 2.06 16 40 H 0.04 0.60 6.58 -51.93 -0.34 0.26 16 41 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 42 H 0.14 2.86 7.85 -52.49 -0.41 2.45 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -31.30 353.95 -6.81 -38.11 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.03 Total: 2.33 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -3.16 Total: 6.87 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.12 Total: -46.06 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.11 Total: -5.24 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.30 -6.81 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071908830.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.825 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds