Wall clock time and date at job start Tue Mar 31 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48501 * 109.47103 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47353 * 239.99678 * 3 2 1 6 6 H 1.48499 * 109.47344 * 119.99113 * 3 2 1 7 7 C 1.39888 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00282 * 199.01547 * 7 2 1 9 9 C 1.41161 * 120.00039 * 19.01243 * 7 2 1 10 10 C 1.40864 * 120.16157 * 307.98401 * 9 7 2 11 11 C 1.36378 * 119.82734 * 179.76103 * 10 9 7 12 12 C 1.39483 * 120.16836 * 0.53653 * 11 10 9 13 13 N 1.39238 * 119.83433 * 179.71805 * 12 11 10 14 14 C 1.34776 * 120.00348 * 108.45502 * 13 12 11 15 15 O 1.21588 * 119.99465 * 4.98886 * 14 13 12 16 16 N 1.34772 * 120.00501 * 184.99465 * 14 13 12 17 17 C 1.50166 * 120.53561 * 12.59529 * 16 14 13 18 18 C 1.46243 * 107.53126 * 109.57133 * 17 16 14 19 19 C 1.52525 * 114.27473 * 58.41067 * 18 17 16 20 20 C 1.50133 * 105.41333 * 270.59111 * 19 18 17 21 21 C 1.54848 * 110.81139 * 97.68426 * 20 19 18 22 22 C 1.43434 * 120.53898 * 192.32639 * 16 14 13 23 23 H 1.08995 * 108.16090 * 149.86584 * 22 16 14 24 24 C 1.50707 * 108.16055 * 33.30084 * 22 16 14 25 25 C 1.34507 * 125.79035 * 89.85955 * 24 22 16 26 26 C 1.41382 * 106.84031 * 180.02562 * 25 24 22 27 27 C 1.34506 * 106.84346 * 359.97438 * 26 25 24 28 28 O 1.34296 * 125.78628 * 269.55364 * 24 22 16 29 29 C 1.39483 * 120.32922 * 359.68630 * 12 11 10 30 30 C 1.36374 * 120.17201 * 0.05235 * 29 12 11 31 31 H 0.97001 * 119.99429 * 158.57538 * 1 2 3 32 32 H 1.07999 * 120.08944 * 359.97438 * 10 9 7 33 33 H 1.07996 * 119.91708 * 180.26911 * 11 10 9 34 34 H 0.96998 * 120.00072 * 288.45123 * 13 12 11 35 35 H 1.09001 * 109.85343 * 229.07884 * 17 16 14 36 36 H 1.09008 * 109.84599 * 350.06865 * 17 16 14 37 37 H 1.08999 * 108.52435 * 179.65374 * 18 17 16 38 38 H 1.09004 * 108.52106 * 297.17187 * 18 17 16 39 39 H 1.08996 * 110.25087 * 29.56649 * 19 18 17 40 40 H 1.08996 * 110.24923 * 151.47898 * 19 18 17 41 41 H 1.08994 * 109.20919 * 218.02492 * 20 19 18 42 42 H 1.09004 * 109.20843 * 337.38857 * 20 19 18 43 43 H 1.09004 * 109.35738 * 81.33965 * 21 20 19 44 44 H 1.09001 * 109.35572 * 201.06288 * 21 20 19 45 45 H 1.08005 * 126.57626 * 0.03159 * 25 24 22 46 46 H 1.08004 * 126.57920 * 180.02562 * 26 25 24 47 47 H 1.07995 * 125.79417 * 179.97438 * 27 26 25 48 48 H 1.07999 * 119.90982 * 180.02562 * 29 12 11 49 49 H 1.07998 * 120.08657 * 179.97438 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2777 2.7464 -0.0006 5 1 3.0965 1.6964 -1.2124 6 1 3.0964 1.6966 1.2126 7 6 2.0083 -1.2114 0.0005 8 1 3.0441 -1.2368 0.3053 9 6 1.3604 -2.4008 -0.3972 10 6 0.1332 -2.7682 0.1888 11 6 -0.4893 -3.9163 -0.2041 12 6 0.0916 -4.7315 -1.1754 13 7 -0.5471 -5.9051 -1.5671 14 6 -1.1210 -5.9863 -2.7839 15 8 -1.0033 -5.0695 -3.5738 16 7 -1.8252 -7.0836 -3.1250 17 6 -2.2187 -8.0918 -2.0840 18 6 -3.6656 -7.9903 -1.8971 19 6 -4.4798 -8.2283 -3.1647 20 6 -4.6203 -6.8790 -3.8079 21 6 -3.5632 -6.6884 -4.9232 22 6 -2.2161 -7.3043 -4.4873 23 1 -2.2649 -8.3799 -4.6567 24 6 -1.1400 -6.7441 -5.3814 25 6 -0.0667 -7.4152 -5.8360 26 6 0.6731 -6.5124 -6.6339 27 6 0.0073 -5.3438 -6.6196 28 8 -1.0932 -5.4917 -5.8640 29 6 1.3089 -4.3767 -1.7567 30 6 1.9406 -3.2290 -1.3779 31 1 -0.4849 -0.7821 -0.3069 32 1 -0.3152 -2.1407 0.9447 33 1 -1.4323 -4.1971 0.2411 34 1 -0.5791 -6.6644 -0.9642 35 1 -1.9589 -9.0946 -2.4231 36 1 -1.7082 -7.8736 -1.1459 37 1 -3.9700 -8.7209 -1.1477 38 1 -3.8968 -6.9945 -1.5188 39 1 -3.9509 -8.9103 -3.8304 40 1 -5.4603 -8.6324 -2.9129 41 1 -5.6171 -6.7895 -4.2395 42 1 -4.4862 -6.1055 -3.0516 43 1 -3.9075 -7.1770 -5.8347 44 1 -3.4265 -5.6238 -5.1133 45 1 0.1822 -8.4460 -5.6310 46 1 1.5954 -6.7213 -7.1556 47 1 0.3050 -4.4409 -7.1319 48 1 1.7523 -5.0127 -2.5085 49 1 2.8832 -2.9557 -1.8287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071915047.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:35 Heat of formation + Delta-G solvation = 29.507042 kcal Electronic energy + Delta-G solvation = -32462.635001 eV Core-core repulsion = 28356.890470 eV Total energy + Delta-G solvation = -4105.744531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.34166 -40.43879 -38.48816 -37.23992 -34.78854 -33.84765 -33.50769 -32.55496 -32.41979 -29.87611 -29.30461 -28.41603 -26.82989 -25.37057 -24.49003 -22.67468 -21.43030 -21.24272 -21.09255 -20.87896 -20.03661 -19.14836 -18.24612 -17.81529 -16.92090 -16.63900 -15.93323 -15.57403 -15.16458 -14.84140 -14.65121 -14.42102 -14.23183 -14.04948 -13.83750 -13.78295 -13.40924 -13.04162 -12.74736 -12.72667 -12.54264 -12.46817 -12.33522 -12.22571 -11.97639 -11.74112 -11.28633 -11.17321 -10.99264 -10.92066 -10.80531 -10.77908 -10.58974 -10.29532 -9.99558 -9.70888 -9.59499 -9.52452 -8.79796 -8.63047 -8.52946 -8.16995 -7.86828 -7.28557 -6.66405 -4.41105 1.93519 2.49591 2.74331 2.78527 3.05251 3.23923 3.30972 3.31360 3.46828 3.58760 4.12108 4.16984 4.37810 4.59307 4.65921 4.73107 4.79819 4.83402 4.93164 5.12153 5.22392 5.26990 5.29241 5.33470 5.36537 5.43698 5.53865 5.73962 5.82613 5.94432 5.97286 5.99875 6.01028 6.06673 6.11615 6.14619 6.18854 6.35503 6.50694 6.59187 6.73661 6.81337 6.86471 6.99205 7.05709 7.38046 7.50338 7.68813 7.70981 7.89140 7.97622 8.20939 8.24459 8.32495 8.74670 9.05570 9.09526 10.44844 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.003077 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.861223 B = 9098.065359 C =10139.781714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.039 3.961 3 Si 1.072 2.928 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.104 3.896 10 C -0.182 4.182 11 C -0.092 4.092 12 C 0.034 3.966 13 N -0.678 5.678 14 C 0.699 3.301 15 O -0.549 6.549 16 N -0.629 5.629 17 C 0.120 3.880 18 C -0.146 4.146 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.133 4.133 22 C 0.255 3.745 23 H 0.094 0.906 24 C -0.002 4.002 25 C -0.216 4.216 26 C -0.227 4.227 27 C -0.029 4.029 28 O -0.134 6.134 29 C -0.073 4.073 30 C -0.188 4.188 31 H 0.295 0.705 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.387 0.613 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.194 0.806 48 H 0.092 0.908 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 -18.733 -7.829 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.176 4.176 3 Si 0.897 3.103 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.102 3.898 10 C -0.202 4.202 11 C -0.112 4.112 12 C -0.058 4.058 13 N -0.329 5.329 14 C 0.401 3.599 15 O -0.422 6.422 16 N -0.369 5.369 17 C -0.002 4.002 18 C -0.184 4.184 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.173 4.173 22 C 0.149 3.851 23 H 0.112 0.888 24 C -0.054 4.054 25 C -0.236 4.236 26 C -0.246 4.246 27 C -0.098 4.098 28 O -0.027 6.027 29 C -0.093 4.093 30 C -0.208 4.208 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.223 0.777 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.155 0.845 46 H 0.158 0.842 47 H 0.211 0.789 48 H 0.110 0.890 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.492 -16.197 -8.057 19.580 hybrid contribution 0.432 -2.134 -0.054 2.177 sum -7.060 -18.331 -8.111 21.252 Atomic orbital electron populations 1.70272 1.07289 1.38689 1.32125 1.26816 0.95959 1.03131 0.91688 0.83557 0.75152 0.74118 0.77511 1.20171 1.20360 1.20614 1.20328 1.00802 0.92653 1.44384 0.90859 1.17849 0.91446 0.92046 0.88453 1.21133 0.99976 0.96511 1.02540 1.20568 0.97770 0.94806 0.98079 1.16797 0.94554 0.90308 1.04143 1.42193 1.58856 1.15785 1.16114 1.16088 0.78665 0.82079 0.83019 1.91002 1.64829 1.36725 1.49681 1.47449 1.58272 1.23795 1.07402 1.20993 0.95386 0.92196 0.91589 1.20923 0.95515 1.03219 0.98755 1.21051 0.99982 0.97656 0.96713 1.21541 0.98265 0.97309 0.98422 1.22618 0.93525 1.03002 0.98116 1.18691 0.89774 0.97989 0.78624 0.88801 1.22262 0.99448 0.83123 1.00591 1.21407 0.96869 1.01013 1.04354 1.21641 1.02832 0.94090 1.06028 1.23953 0.87794 1.00018 0.98084 1.84162 1.39082 1.29522 1.49932 1.20486 0.93962 0.96728 0.98111 1.21052 1.02003 0.97401 1.00317 0.88748 0.87070 0.88791 0.77685 0.90649 0.89787 0.91280 0.91165 0.91304 0.91374 0.92294 0.91607 0.90819 0.90468 0.84456 0.84201 0.78891 0.89011 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.36 12.89 55.54 0.72 -23.64 16 2 C 0.04 1.05 5.43 -17.34 -0.09 0.95 16 3 Si 1.07 23.16 29.97 -169.99 -5.09 18.06 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 7 C -0.55 -15.17 8.86 -37.86 -0.34 -15.50 16 8 H 0.07 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.10 2.80 5.28 -106.80 -0.56 2.23 16 10 C -0.18 -4.63 7.67 -39.26 -0.30 -4.93 16 11 C -0.09 -2.08 9.90 -39.79 -0.39 -2.48 16 12 C 0.03 0.74 5.48 -83.57 -0.46 0.28 16 13 N -0.68 -11.82 5.08 -14.10 -0.07 -11.89 16 14 C 0.70 12.52 7.65 -86.92 -0.67 11.85 16 15 O -0.55 -12.29 12.67 -18.55 -0.24 -12.52 16 16 N -0.63 -8.14 2.51 -175.19 -0.44 -8.58 16 17 C 0.12 1.04 6.00 -5.20 -0.03 1.01 16 18 C -0.15 -1.15 5.20 -30.19 -0.16 -1.31 16 19 C -0.12 -0.87 5.76 -28.40 -0.16 -1.04 16 20 C -0.12 -1.16 5.65 -27.18 -0.15 -1.31 16 21 C -0.13 -1.53 5.66 -25.02 -0.14 -1.67 16 22 C 0.26 3.10 1.97 -69.97 -0.14 2.97 16 23 H 0.09 0.88 6.87 -51.93 -0.36 0.52 16 24 C 0.00 -0.03 4.31 -35.62 -0.15 -0.18 16 25 C -0.22 -3.07 10.80 -39.71 -0.43 -3.49 16 26 C -0.23 -3.22 10.91 -39.71 -0.43 -3.65 16 27 C -0.03 -0.44 12.09 29.41 0.36 -0.08 16 28 O -0.13 -2.35 7.75 -18.13 -0.14 -2.49 16 29 C -0.07 -1.69 9.46 -39.79 -0.38 -2.07 16 30 C -0.19 -4.69 9.74 -39.26 -0.38 -5.07 16 31 H 0.30 8.59 5.58 -40.82 -0.23 8.36 16 32 H 0.11 2.93 6.87 -52.49 -0.36 2.57 16 33 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.39 5.34 6.47 -40.82 -0.26 5.07 16 35 H 0.08 0.49 8.13 -51.93 -0.42 0.06 16 36 H 0.08 0.68 5.79 -51.92 -0.30 0.38 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.71 6.93 -51.93 -0.36 0.35 16 39 H 0.07 0.46 6.28 -51.93 -0.33 0.14 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.80 6.83 -51.93 -0.35 0.45 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.14 7.41 -51.93 -0.38 0.75 16 45 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 46 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 47 H 0.19 2.35 8.06 -52.49 -0.42 1.93 16 48 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 49 H 0.10 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -33.74 386.00 -11.26 -45.00 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -6.80 Total: 13.75 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -5.02 Total: -23.50 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.21 Total: -44.11 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.38 Total: -15.01 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.09 Total: 18.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.74 -11.26 -45.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071915047.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.506 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds