Wall clock time and date at job start Tue Mar 31 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48503 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47143 * 300.00175 * 3 2 1 6 6 H 1.48492 * 109.47041 * 60.00495 * 3 2 1 7 7 C 1.39897 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99407 * 188.17954 * 7 2 1 9 9 C 1.41151 * 120.00328 * 8.18068 * 7 2 1 10 10 C 1.40871 * 120.16568 * 210.95612 * 9 7 2 11 11 C 1.36373 * 119.82946 * 180.02562 * 10 9 7 12 12 C 1.39476 * 120.16867 * 359.97438 * 11 10 9 13 13 N 1.39245 * 119.83439 * 179.97438 * 12 11 10 14 14 C 1.34770 * 119.99955 * 144.72607 * 13 12 11 15 15 O 1.21584 * 120.00193 * 355.11458 * 14 13 12 16 16 N 1.34779 * 120.00270 * 175.11162 * 14 13 12 17 17 C 1.43442 * 120.53116 * 4.83839 * 16 14 13 18 18 C 1.54400 * 116.38971 * 271.72921 * 17 16 14 19 19 C 1.54837 * 110.07345 * 318.65503 * 18 17 16 20 20 C 1.50129 * 110.81396 * 321.07529 * 19 18 17 21 21 C 1.52520 * 105.41582 * 97.68497 * 20 19 18 22 22 C 1.46244 * 114.27581 * 270.59035 * 21 20 19 23 23 H 1.08999 * 109.84800 * 298.90231 * 22 21 20 24 24 C 1.50697 * 109.84742 * 177.91456 * 22 21 20 25 25 C 1.34511 * 125.79115 * 143.10910 * 24 22 21 26 26 C 1.41384 * 106.84256 * 179.89159 * 25 24 22 27 27 C 1.34513 * 106.84118 * 0.37292 * 26 25 24 28 28 O 1.34305 * 108.42038 * 359.77304 * 27 26 25 29 29 C 1.39476 * 120.33505 * 0.27792 * 12 11 10 30 30 C 1.36377 * 120.16636 * 359.48199 * 29 12 11 31 31 H 0.96999 * 120.00081 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.07981 * 359.97438 * 10 9 7 33 33 H 1.08003 * 119.91168 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99837 * 325.00867 * 13 12 11 35 35 H 1.08997 * 108.15711 * 33.30731 * 17 16 14 36 36 H 1.09003 * 108.15347 * 149.87436 * 17 16 14 37 37 H 1.09000 * 109.44407 * 198.44002 * 18 17 16 38 38 H 1.08997 * 109.23677 * 78.74086 * 18 17 16 39 39 H 1.09000 * 109.21339 * 200.73084 * 19 18 17 40 40 H 1.09004 * 109.17554 * 81.39231 * 19 18 17 41 41 H 1.08994 * 110.24921 * 338.70525 * 20 19 18 42 42 H 1.09008 * 110.24685 * 216.65284 * 20 19 18 43 43 H 1.09005 * 108.52864 * 149.35363 * 21 20 19 44 44 H 1.09003 * 108.52421 * 31.83184 * 21 20 19 45 45 H 1.07995 * 126.57764 * 0.03350 * 25 24 22 46 46 H 1.07999 * 126.58099 * 180.16957 * 26 25 24 47 47 H 1.07996 * 125.79127 * 179.78933 * 27 26 25 48 48 H 1.08003 * 119.91738 * 179.72260 * 29 12 11 49 49 H 1.08006 * 120.08897 * 180.25364 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8840 2.3964 -1.2124 6 1 1.8841 2.3963 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0801 -1.2163 0.1325 9 6 1.3133 -2.4277 -0.1750 10 6 1.7874 -3.6073 0.4316 11 6 1.1109 -4.7786 0.2581 12 6 -0.0480 -4.8104 -0.5173 13 7 -0.7331 -6.0103 -0.6903 14 6 -2.0785 -6.0128 -0.7692 15 8 -2.6993 -4.9811 -0.6007 16 7 -2.7359 -7.1590 -1.0349 17 6 -2.0248 -8.4008 -1.1334 18 6 -1.4686 -8.7644 -2.5271 19 6 -2.5070 -8.4153 -3.6214 20 6 -3.8983 -8.7386 -3.1591 21 6 -4.4748 -7.4195 -2.6551 22 6 -4.2236 -7.1557 -1.2387 23 1 -4.6822 -7.9351 -0.6301 24 6 -4.7888 -5.8109 -0.8607 25 6 -5.3767 -5.5055 0.3100 26 6 -5.7527 -4.1446 0.2368 27 6 -5.3795 -3.7018 -0.9773 28 8 -4.7962 -4.7154 -1.6378 29 6 -0.5208 -3.6476 -1.1254 30 6 0.1422 -2.4679 -0.9570 31 1 -0.4850 0.8400 0.0004 32 1 2.6849 -3.5843 1.0320 33 1 1.4735 -5.6839 0.7223 34 1 -0.2422 -6.8448 -0.7500 35 1 -1.1873 -8.3689 -0.4366 36 1 -2.6934 -9.2011 -0.8162 37 1 -1.2503 -9.8317 -2.5636 38 1 -0.5522 -8.2020 -2.7060 39 1 -2.2859 -8.9887 -4.5216 40 1 -2.4430 -7.3513 -3.8492 41 1 -3.8671 -9.4698 -2.3515 42 1 -4.4934 -9.1173 -3.9901 43 1 -5.5522 -7.4269 -2.8201 44 1 -4.0439 -6.6071 -3.2403 45 1 -5.5299 -6.1715 1.1462 46 1 -6.2478 -3.5713 1.0067 47 1 -5.5242 -2.7011 -1.3566 48 1 -1.4165 -3.6809 -1.7281 49 1 -0.2273 -1.5674 -1.4252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071915048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:39 Heat of formation + Delta-G solvation = 30.583165 kcal Electronic energy + Delta-G solvation = -32608.662010 eV Core-core repulsion = 28502.964144 eV Total energy + Delta-G solvation = -4105.697867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.16221 -40.38506 -38.35712 -36.97038 -34.66589 -33.80830 -33.47536 -32.42262 -32.35389 -29.45080 -29.19049 -28.65323 -26.78387 -25.12719 -24.78547 -22.60636 -21.43601 -21.18764 -20.86668 -20.46371 -20.03673 -19.00185 -17.95289 -17.22904 -16.71291 -16.49719 -15.92025 -15.41231 -15.26644 -14.92163 -14.86940 -14.62206 -14.22403 -13.88954 -13.71050 -13.54553 -12.99771 -12.76490 -12.71941 -12.62117 -12.33658 -12.28747 -12.04284 -11.94192 -11.69257 -11.59936 -11.42307 -11.32050 -11.11006 -10.85409 -10.82675 -10.75137 -10.59989 -10.45169 -9.91253 -9.83761 -9.53543 -9.32692 -9.16720 -8.68153 -8.56077 -7.70542 -7.44413 -6.84150 -6.59574 -4.24437 2.09632 2.71259 2.91257 3.11050 3.12971 3.17158 3.18196 3.28715 3.45515 3.76344 4.01246 4.30995 4.42284 4.63811 4.71673 4.77160 4.85680 4.90814 4.95877 5.14946 5.26637 5.34142 5.50673 5.52367 5.55797 5.62384 5.66674 5.75448 5.86956 5.94895 6.00510 6.10611 6.16369 6.19340 6.24741 6.32692 6.42209 6.47737 6.60219 6.86854 6.90338 7.00250 7.11135 7.19008 7.34654 7.40070 7.67246 7.69067 7.88285 8.07702 8.13516 8.33951 8.51781 8.71564 8.97690 8.99993 9.18997 10.33878 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003237 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.112312 B = 8646.860286 C =10066.153907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.071 3.929 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.103 3.897 10 C -0.208 4.208 11 C -0.113 4.113 12 C 0.025 3.975 13 N -0.667 5.667 14 C 0.694 3.306 15 O -0.541 6.541 16 N -0.628 5.628 17 C 0.113 3.887 18 C -0.141 4.141 19 C -0.119 4.119 20 C -0.113 4.113 21 C -0.145 4.145 22 C 0.255 3.745 23 H 0.101 0.899 24 C 0.029 3.971 25 C -0.214 4.214 26 C -0.213 4.213 27 C -0.027 4.027 28 O -0.156 6.156 29 C -0.087 4.087 30 C -0.143 4.143 31 H 0.278 0.722 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.388 0.612 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.192 0.808 48 H 0.100 0.900 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.398 -17.021 -4.847 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.094 0.906 9 C 0.101 3.899 10 C -0.228 4.228 11 C -0.134 4.134 12 C -0.067 4.067 13 N -0.314 5.314 14 C 0.396 3.604 15 O -0.415 6.415 16 N -0.368 5.368 17 C -0.013 4.013 18 C -0.180 4.180 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.183 4.183 22 C 0.154 3.846 23 H 0.119 0.881 24 C -0.022 4.022 25 C -0.234 4.234 26 C -0.233 4.233 27 C -0.095 4.095 28 O -0.051 6.051 29 C -0.107 4.107 30 C -0.163 4.163 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.223 0.777 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.151 0.849 46 H 0.155 0.845 47 H 0.209 0.791 48 H 0.118 0.882 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.935 -16.066 -5.013 19.544 hybrid contribution 0.666 0.473 0.443 0.929 sum -9.269 -15.593 -4.570 18.707 Atomic orbital electron populations 1.69839 1.07278 1.28716 1.36978 1.25880 0.94834 1.01079 0.92668 0.86241 0.80685 0.81189 0.78417 1.18586 1.19907 1.20090 1.19518 0.95268 0.90404 1.44252 0.90620 1.17661 0.91711 0.92045 0.88512 1.20602 1.02807 0.93294 1.06090 1.20031 0.96757 0.97236 0.99352 1.17008 0.97030 0.85105 1.07599 1.42294 1.04002 1.09079 1.76013 1.16022 0.82202 0.83442 0.78717 1.90956 1.64623 1.30267 1.55698 1.47488 1.06097 1.06682 1.76547 1.20883 0.96990 0.86734 0.96673 1.22662 0.99005 1.01336 0.95010 1.21540 0.94406 1.01994 0.97752 1.21022 0.96490 0.96586 1.00980 1.20965 1.02022 0.98992 0.96297 1.18619 0.78694 0.90665 0.96667 0.88082 1.21257 1.01261 0.87774 0.91929 1.21172 1.07688 0.96852 0.97712 1.21526 1.07820 0.95678 0.98242 1.23681 1.00181 0.92264 0.93397 1.83940 1.61438 1.17591 1.42165 1.20425 0.98801 0.92252 0.99206 1.21028 0.98088 0.96170 1.01053 0.91139 0.88697 0.89419 0.77710 0.91639 0.90935 0.90747 0.91610 0.92449 0.91634 0.91132 0.91305 0.91076 0.90514 0.84887 0.84537 0.79142 0.88162 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.78 10.85 55.55 0.60 -21.18 16 2 C 0.07 1.86 5.28 -17.34 -0.09 1.77 16 3 Si 0.91 19.34 29.57 -169.99 -5.03 14.31 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.46 -12.60 9.04 -37.86 -0.34 -12.95 16 8 H 0.08 1.97 7.86 -52.48 -0.41 1.55 16 9 C 0.10 2.82 5.54 -106.80 -0.59 2.23 16 10 C -0.21 -5.14 9.74 -39.26 -0.38 -5.53 16 11 C -0.11 -2.54 9.90 -39.79 -0.39 -2.94 16 12 C 0.03 0.57 6.25 -83.57 -0.52 0.05 16 13 N -0.67 -12.20 5.16 -14.10 -0.07 -12.28 16 14 C 0.69 12.79 7.93 -86.92 -0.69 12.10 16 15 O -0.54 -12.10 9.65 -18.34 -0.18 -12.27 16 16 N -0.63 -8.41 2.58 -175.35 -0.45 -8.87 16 17 C 0.11 1.07 4.52 -4.93 -0.02 1.05 16 18 C -0.14 -1.20 6.40 -25.03 -0.16 -1.36 16 19 C -0.12 -1.08 5.65 -27.19 -0.15 -1.23 16 20 C -0.11 -0.90 5.76 -28.40 -0.16 -1.06 16 21 C -0.14 -1.50 4.33 -30.19 -0.13 -1.64 16 22 C 0.26 3.12 2.96 -70.24 -0.21 2.91 16 23 H 0.10 0.97 8.13 -51.93 -0.42 0.55 16 24 C 0.03 0.46 3.62 -35.63 -0.13 0.33 16 25 C -0.21 -3.40 10.59 -39.70 -0.42 -3.82 16 26 C -0.21 -3.45 10.91 -39.70 -0.43 -3.88 16 27 C -0.03 -0.44 11.84 29.42 0.35 -0.09 16 28 O -0.16 -2.78 8.79 -17.95 -0.16 -2.94 16 29 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 30 C -0.14 -3.92 8.59 -39.26 -0.34 -4.26 16 31 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 32 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.39 5.74 6.71 -40.82 -0.27 5.47 16 35 H 0.07 0.62 6.58 -51.93 -0.34 0.28 16 36 H 0.07 0.53 6.89 -51.93 -0.36 0.17 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.77 6.83 -51.93 -0.35 0.42 16 41 H 0.07 0.47 6.28 -51.93 -0.33 0.15 16 42 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.01 6.66 -51.93 -0.35 0.66 16 45 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 47 H 0.19 2.60 8.06 -52.49 -0.42 2.17 16 48 H 0.10 2.60 6.54 -52.48 -0.34 2.26 16 49 H 0.12 3.43 6.29 -52.48 -0.33 3.10 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -32.62 383.37 -11.54 -44.16 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -6.87 Total: 14.12 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -5.16 Total: -20.84 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.08 Total: -42.32 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.33 Total: -15.21 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.62 -11.54 -44.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071915048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.744 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds