Wall clock time and date at job start Tue Mar 31 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48503 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47143 * 300.00175 * 3 2 1 6 6 H 1.48492 * 109.47041 * 60.00495 * 3 2 1 7 7 C 1.39897 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99407 * 188.17954 * 7 2 1 9 9 C 1.41151 * 120.00328 * 8.18068 * 7 2 1 10 10 C 1.40871 * 120.16568 * 210.95612 * 9 7 2 11 11 C 1.36373 * 119.82946 * 180.02562 * 10 9 7 12 12 C 1.39476 * 120.16867 * 359.97438 * 11 10 9 13 13 N 1.39245 * 119.83439 * 179.97438 * 12 11 10 14 14 C 1.34770 * 119.99955 * 144.72607 * 13 12 11 15 15 O 1.21584 * 120.00193 * 355.11458 * 14 13 12 16 16 N 1.34779 * 120.00270 * 175.11162 * 14 13 12 17 17 C 1.43442 * 120.53116 * 4.83839 * 16 14 13 18 18 C 1.54400 * 116.38971 * 271.72921 * 17 16 14 19 19 C 1.54837 * 110.07345 * 318.65503 * 18 17 16 20 20 C 1.50129 * 110.81396 * 321.07529 * 19 18 17 21 21 C 1.52520 * 105.41582 * 97.68497 * 20 19 18 22 22 C 1.46244 * 114.27581 * 270.59035 * 21 20 19 23 23 H 1.08999 * 109.84800 * 298.90231 * 22 21 20 24 24 C 1.50697 * 109.84742 * 177.91456 * 22 21 20 25 25 C 1.34511 * 125.79115 * 143.10910 * 24 22 21 26 26 C 1.41384 * 106.84256 * 179.89159 * 25 24 22 27 27 C 1.34513 * 106.84118 * 0.37292 * 26 25 24 28 28 O 1.34305 * 108.42038 * 359.77304 * 27 26 25 29 29 C 1.39476 * 120.33505 * 0.27792 * 12 11 10 30 30 C 1.36377 * 120.16636 * 359.48199 * 29 12 11 31 31 H 0.96999 * 120.00081 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.07981 * 359.97438 * 10 9 7 33 33 H 1.08003 * 119.91168 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99837 * 325.00867 * 13 12 11 35 35 H 1.08997 * 108.15711 * 33.30731 * 17 16 14 36 36 H 1.09003 * 108.15347 * 149.87436 * 17 16 14 37 37 H 1.09000 * 109.44407 * 198.44002 * 18 17 16 38 38 H 1.08997 * 109.23677 * 78.74086 * 18 17 16 39 39 H 1.09000 * 109.21339 * 200.73084 * 19 18 17 40 40 H 1.09004 * 109.17554 * 81.39231 * 19 18 17 41 41 H 1.08994 * 110.24921 * 338.70525 * 20 19 18 42 42 H 1.09008 * 110.24685 * 216.65284 * 20 19 18 43 43 H 1.09005 * 108.52864 * 149.35363 * 21 20 19 44 44 H 1.09003 * 108.52421 * 31.83184 * 21 20 19 45 45 H 1.07995 * 126.57764 * 0.03350 * 25 24 22 46 46 H 1.07999 * 126.58099 * 180.16957 * 26 25 24 47 47 H 1.07996 * 125.79127 * 179.78933 * 27 26 25 48 48 H 1.08003 * 119.91738 * 179.72260 * 29 12 11 49 49 H 1.08006 * 120.08897 * 180.25364 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3463 -0.0006 5 1 1.8840 2.3964 -1.2124 6 1 1.8841 2.3963 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0801 -1.2163 0.1325 9 6 1.3133 -2.4277 -0.1750 10 6 1.7874 -3.6073 0.4316 11 6 1.1109 -4.7786 0.2581 12 6 -0.0480 -4.8104 -0.5173 13 7 -0.7331 -6.0103 -0.6903 14 6 -2.0785 -6.0128 -0.7692 15 8 -2.6993 -4.9811 -0.6007 16 7 -2.7359 -7.1590 -1.0349 17 6 -2.0248 -8.4008 -1.1334 18 6 -1.4686 -8.7644 -2.5271 19 6 -2.5070 -8.4153 -3.6214 20 6 -3.8983 -8.7386 -3.1591 21 6 -4.4748 -7.4195 -2.6551 22 6 -4.2236 -7.1557 -1.2387 23 1 -4.6822 -7.9351 -0.6301 24 6 -4.7888 -5.8109 -0.8607 25 6 -5.3767 -5.5055 0.3100 26 6 -5.7527 -4.1446 0.2368 27 6 -5.3795 -3.7018 -0.9773 28 8 -4.7962 -4.7154 -1.6378 29 6 -0.5208 -3.6476 -1.1254 30 6 0.1422 -2.4679 -0.9570 31 1 -0.4850 0.8400 0.0004 32 1 2.6849 -3.5843 1.0320 33 1 1.4735 -5.6839 0.7223 34 1 -0.2422 -6.8448 -0.7500 35 1 -1.1873 -8.3689 -0.4366 36 1 -2.6934 -9.2011 -0.8162 37 1 -1.2503 -9.8317 -2.5636 38 1 -0.5522 -8.2020 -2.7060 39 1 -2.2859 -8.9887 -4.5216 40 1 -2.4430 -7.3513 -3.8492 41 1 -3.8671 -9.4698 -2.3515 42 1 -4.4934 -9.1173 -3.9901 43 1 -5.5522 -7.4269 -2.8201 44 1 -4.0439 -6.6071 -3.2403 45 1 -5.5299 -6.1715 1.1462 46 1 -6.2478 -3.5713 1.0067 47 1 -5.5242 -2.7011 -1.3566 48 1 -1.4165 -3.6809 -1.7281 49 1 -0.2273 -1.5674 -1.4252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071915048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:38 Heat of formation + Delta-G solvation = 13.923805 kcal Electronic energy + Delta-G solvation = -32609.384415 eV Core-core repulsion = 28502.964144 eV Total energy + Delta-G solvation = -4106.420271 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.38504 -41.66748 -39.79858 -38.51996 -36.26762 -35.15180 -34.62363 -33.87345 -33.56936 -31.41946 -30.74654 -30.03569 -27.84608 -26.62460 -25.92579 -23.86197 -23.15754 -22.73201 -22.14199 -21.71140 -21.05640 -20.41267 -19.27371 -19.14755 -18.11392 -17.68035 -17.12557 -17.03227 -16.63372 -16.25704 -15.81939 -15.73540 -15.60068 -15.43371 -14.99584 -14.82428 -14.47806 -14.38860 -13.95548 -13.70776 -13.65113 -13.54284 -13.51211 -13.32790 -13.30685 -13.01544 -12.82988 -12.63115 -12.46475 -12.27329 -12.18671 -11.78497 -11.69962 -11.50752 -11.46362 -11.34822 -11.20138 -10.97484 -10.63744 -10.44782 -9.66397 -9.45010 -8.96377 -8.72932 -8.53125 -6.28069 0.83055 0.93683 1.14211 1.37498 1.45370 1.53399 1.66871 2.00793 2.22216 2.27788 2.36351 2.82465 3.10678 3.47291 3.73582 3.87089 3.95140 4.03952 4.08489 4.20528 4.28523 4.33591 4.37124 4.42681 4.46115 4.50711 4.61150 4.83254 4.87721 4.95287 4.97782 5.01196 5.08810 5.10213 5.16978 5.19029 5.27283 5.27542 5.32469 5.36284 5.39866 5.44560 5.48144 5.62500 5.67177 5.79674 5.81465 6.09209 6.14045 6.18372 6.37980 6.44066 6.70978 6.96284 7.03665 7.10281 7.72711 8.41942 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003237 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.112312 B = 8646.860286 C =10066.153907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.025 3.975 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.498 4.498 8 H 0.080 0.920 9 C 0.070 3.930 10 C -0.213 4.213 11 C -0.108 4.108 12 C 0.043 3.957 13 N -0.660 5.660 14 C 0.686 3.314 15 O -0.586 6.586 16 N -0.616 5.616 17 C 0.099 3.901 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.103 4.103 21 C -0.138 4.138 22 C 0.251 3.749 23 H 0.142 0.858 24 C 0.022 3.978 25 C -0.230 4.230 26 C -0.225 4.225 27 C -0.054 4.054 28 O -0.179 6.179 29 C -0.098 4.098 30 C -0.166 4.166 31 H 0.282 0.718 32 H 0.111 0.889 33 H 0.132 0.868 34 H 0.409 0.591 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.205 0.795 48 H 0.084 0.916 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.988 -20.624 -4.156 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.187 4.187 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.528 4.528 8 H 0.098 0.902 9 C 0.068 3.932 10 C -0.233 4.233 11 C -0.129 4.129 12 C -0.051 4.051 13 N -0.309 5.309 14 C 0.388 3.612 15 O -0.464 6.464 16 N -0.354 5.354 17 C -0.025 4.025 18 C -0.174 4.174 19 C -0.158 4.158 20 C -0.140 4.140 21 C -0.176 4.176 22 C 0.150 3.850 23 H 0.159 0.841 24 C -0.029 4.029 25 C -0.250 4.250 26 C -0.244 4.244 27 C -0.122 4.122 28 O -0.075 6.075 29 C -0.118 4.118 30 C -0.186 4.186 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.150 0.850 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.171 0.829 46 H 0.169 0.831 47 H 0.222 0.778 48 H 0.102 0.898 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.532 -19.765 -4.340 22.369 hybrid contribution 0.431 1.404 0.191 1.481 sum -9.101 -18.362 -4.149 20.909 Atomic orbital electron populations 1.69947 1.09041 1.29877 1.38158 1.26819 0.95561 1.04696 0.91583 0.85088 0.79409 0.76103 0.78626 1.17640 1.19291 1.19346 1.19801 0.95606 0.91385 1.46035 0.90215 1.17979 0.92180 0.93542 0.89511 1.20878 1.03409 0.93268 1.05741 1.20378 0.95890 0.98162 0.98452 1.17036 0.96807 0.85757 1.05473 1.42078 1.04316 1.08392 1.76146 1.16303 0.82028 0.84325 0.78499 1.90948 1.65541 1.32539 1.57381 1.47483 1.06654 1.06402 1.74895 1.21279 0.97926 0.85607 0.97669 1.22664 0.97829 1.03078 0.93863 1.21530 0.95689 0.99773 0.98832 1.21026 0.95377 0.95338 1.02256 1.20903 1.02674 0.99420 0.94621 1.19090 0.77797 0.89667 0.98432 0.84100 1.22002 1.00632 0.88533 0.91749 1.21525 1.07984 0.97019 0.98501 1.21872 1.07703 0.96429 0.98376 1.24127 1.00877 0.93035 0.94147 1.83924 1.61846 1.18544 1.43194 1.20368 0.98374 0.93163 0.99916 1.20883 0.99295 0.96000 1.02439 0.90741 0.87097 0.85013 0.75315 0.91034 0.87153 0.87374 0.93321 0.91131 0.95492 0.88509 0.89737 0.89906 0.94250 0.82857 0.83105 0.77849 0.89770 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.17 10.85 21.82 0.24 -47.94 16 2 C 0.03 1.37 5.28 85.24 0.45 1.82 16 3 Si 0.99 40.61 29.57 68.60 2.03 42.64 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.50 -27.99 9.04 23.39 0.21 -27.78 16 8 H 0.08 4.24 7.86 -2.91 -0.02 4.22 16 9 C 0.07 3.99 5.54 -21.28 -0.12 3.87 16 10 C -0.21 -10.53 9.74 22.48 0.22 -10.31 16 11 C -0.11 -4.71 9.90 22.13 0.22 -4.49 16 12 C 0.04 1.97 6.25 38.56 0.24 2.21 16 13 N -0.66 -23.40 5.16 -316.79 -1.64 -25.03 16 14 C 0.69 24.99 7.93 179.06 1.42 26.41 16 15 O -0.59 -26.97 9.65 18.61 0.18 -26.79 16 16 N -0.62 -15.17 2.58 -826.96 -2.13 -17.30 16 17 C 0.10 1.47 4.52 87.42 0.39 1.87 16 18 C -0.14 -1.81 6.40 31.70 0.20 -1.60 16 19 C -0.12 -1.89 5.65 30.30 0.17 -1.72 16 20 C -0.10 -1.24 5.76 29.51 0.17 -1.07 16 21 C -0.14 -2.64 4.33 28.36 0.12 -2.52 16 22 C 0.25 5.59 2.96 41.45 0.12 5.71 16 23 H 0.14 2.06 8.13 -2.39 -0.02 2.04 16 24 C 0.02 0.69 3.62 24.83 0.09 0.78 16 25 C -0.23 -7.25 10.59 22.19 0.24 -7.01 16 26 C -0.22 -7.46 10.91 22.19 0.24 -7.22 16 27 C -0.05 -1.89 11.84 66.97 0.79 -1.10 16 28 O -0.18 -6.72 8.79 20.01 0.18 -6.54 16 29 C -0.10 -5.21 8.57 22.13 0.19 -5.02 16 30 C -0.17 -9.64 8.59 22.48 0.19 -9.45 16 31 H 0.28 14.75 8.30 -92.71 -0.77 13.98 16 32 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 33 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 34 H 0.41 11.03 6.71 -92.71 -0.62 10.41 16 35 H 0.07 1.03 6.58 -2.39 -0.02 1.02 16 36 H 0.11 0.92 6.89 -2.39 -0.02 0.90 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.03 0.63 6.83 -2.39 -0.02 0.61 16 41 H 0.10 0.72 6.28 -2.39 -0.02 0.70 16 42 H 0.08 0.81 8.14 -2.38 -0.02 0.80 16 43 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.04 1.06 6.66 -2.39 -0.02 1.05 16 45 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 46 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 47 H 0.20 6.09 8.06 -2.91 -0.02 6.06 16 48 H 0.08 4.69 6.54 -2.91 -0.02 4.68 16 49 H 0.09 5.81 6.29 -2.91 -0.02 5.79 16 Total: -1.00 -77.57 383.37 4.78 -72.79 By element: Atomic # 1 Polarization: 44.47 SS G_CDS: 0.36 Total: 44.82 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 5.57 Total: -36.64 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -3.53 Total: -90.27 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: 0.36 Total: -33.34 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -77.57 4.78 -72.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071915048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.711 kcal (2) G-P(sol) polarization free energy of solvation -77.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds