Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00056 * 2 1 4 4 C 1.53009 * 109.47176 * 54.97888 * 3 2 1 5 5 C 1.52996 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47229 * 59.99561 * 5 4 3 7 7 C 1.52996 * 109.47321 * 300.00083 * 6 5 4 8 8 C 1.52997 * 109.47219 * 294.97878 * 3 2 1 9 9 S 1.65599 * 119.99965 * 179.97438 * 2 1 3 10 10 O 1.42102 * 106.40368 * 341.75167 * 9 2 1 11 11 O 1.42098 * 106.40370 * 208.83366 * 9 2 1 12 12 N 1.65600 * 107.21683 * 95.29470 * 9 2 1 13 13 C 1.39781 * 119.99664 * 299.08902 * 12 9 2 14 14 C 1.38956 * 120.00769 * 313.54061 * 13 12 9 15 15 C 1.38006 * 119.99566 * 179.74421 * 14 13 12 16 16 C 1.38903 * 120.00434 * 0.51164 * 15 14 13 17 17 O 1.35799 * 119.99521 * 179.74840 * 16 15 14 18 18 C 1.34811 * 117.00247 * 185.88902 * 17 16 15 19 19 H 1.08000 * 119.99652 * 5.40259 * 18 17 16 20 20 C 1.38619 * 120.00367 * 185.40594 * 18 17 16 21 21 N 1.31582 * 119.99613 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00395 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47059 * 90.00011 * 22 20 18 24 24 H 1.48502 * 109.47157 * 210.00454 * 22 20 18 25 25 H 1.48501 * 109.46747 * 330.00158 * 22 20 18 26 26 C 1.38898 * 120.01467 * 359.76385 * 16 15 14 27 27 C 1.38010 * 120.00084 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.47344 * 270.00167 * 1 2 3 29 29 H 1.09004 * 109.47009 * 29.99679 * 1 2 3 30 30 H 1.09001 * 109.47267 * 150.00018 * 1 2 3 31 31 H 1.09000 * 109.47364 * 174.97136 * 3 2 1 32 32 H 1.09000 * 109.46360 * 299.99863 * 4 3 2 33 33 H 1.09001 * 109.46868 * 59.99861 * 4 3 2 34 34 H 1.09000 * 109.46875 * 299.99828 * 5 4 3 35 35 H 1.08996 * 109.47140 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47483 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.46974 * 60.00328 * 6 5 4 38 38 H 1.09000 * 109.47297 * 300.00047 * 7 6 5 39 39 H 1.09008 * 109.47369 * 179.97438 * 7 6 5 40 40 H 1.09005 * 109.46923 * 300.00140 * 8 3 2 41 41 H 1.09000 * 109.47177 * 60.00054 * 8 3 2 42 42 H 0.96994 * 120.00087 * 119.09027 * 12 9 2 43 43 H 1.08005 * 120.00126 * 359.97343 * 14 13 12 44 44 H 1.08003 * 120.00174 * 180.25645 * 15 14 13 45 45 H 0.97001 * 120.00138 * 180.02562 * 21 20 18 46 46 H 1.07993 * 120.00305 * 179.97438 * 26 16 15 47 47 H 1.08004 * 119.99974 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.7356 2.1244 1.1814 5 6 2.5001 3.4496 1.1810 6 6 2.2271 4.1955 -0.1266 7 6 2.6891 3.3400 -1.3079 8 6 1.9250 2.0150 -1.3075 9 16 2.2930 -1.4341 0.0006 10 8 1.3724 -2.4288 0.4279 11 8 3.5278 -1.1843 0.6579 12 7 2.6645 -1.7863 -1.5743 13 6 1.6418 -1.9669 -2.5099 14 6 0.5489 -2.7669 -2.1993 15 6 -0.4631 -2.9407 -3.1213 16 6 -0.3843 -2.3246 -4.3637 17 8 -1.3778 -2.4999 -5.2727 18 6 -1.1840 -1.9765 -6.4999 19 1 -0.2362 -1.5231 -6.7500 20 6 -2.2011 -2.0203 -7.4406 21 7 -3.3560 -2.5722 -7.1356 22 14 -1.9329 -1.2944 -9.1408 23 1 -1.3890 -2.3394 -10.0449 24 1 -3.2261 -0.7995 -9.6774 25 1 -0.9702 -0.1672 -9.0514 26 6 0.7108 -1.5295 -4.6767 27 6 1.7205 -1.3510 -3.7530 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 3.2657 1.0716 0.0901 32 1 0.6674 2.3216 1.0913 33 1 1.9297 1.5927 2.1129 34 1 3.5684 3.2527 1.2707 35 1 2.1714 4.0590 2.0228 36 1 2.7722 5.1395 -0.1271 37 1 1.1588 4.3924 -0.2163 38 1 3.7574 3.1431 -1.2181 39 1 2.4941 3.8712 -2.2396 40 1 2.2541 1.4054 -2.1492 41 1 0.8568 2.2122 -1.3975 42 1 3.5916 -1.8674 -1.8474 43 1 0.4898 -3.2496 -1.2349 44 1 -1.3146 -3.5591 -2.8784 45 1 -4.0677 -2.6032 -7.7940 46 1 0.7721 -1.0509 -5.6429 47 1 2.5722 -0.7331 -3.9965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071916539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -90.119593 kcal Electronic energy + Delta-G solvation = -30485.768438 eV Core-core repulsion = 26374.447364 eV Total energy + Delta-G solvation = -4111.321074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.25836 -39.16055 -37.44543 -36.91576 -35.83322 -35.19203 -33.87330 -32.21914 -30.96871 -30.33246 -29.70810 -27.56853 -26.29504 -25.34289 -22.80468 -22.33932 -22.21655 -21.45971 -19.86368 -19.32043 -18.28758 -17.90632 -17.47481 -17.10739 -16.66871 -16.22945 -15.17232 -14.70014 -14.56514 -14.50095 -14.44255 -14.20994 -14.01348 -13.80184 -13.63810 -13.29489 -13.02183 -12.93329 -12.59470 -12.55589 -12.50999 -12.34967 -12.09059 -12.03649 -11.81439 -11.70309 -11.59828 -11.36130 -11.34679 -11.27992 -11.14794 -10.78516 -10.66160 -10.54607 -10.46073 -10.41031 -10.02846 -9.38420 -9.10434 -8.84581 -8.34726 -7.14030 -6.53332 -4.11404 0.58500 2.06405 2.15266 2.83254 3.07463 3.08277 3.13083 3.53358 3.89480 4.34194 4.38772 4.47682 4.54179 4.61131 4.82013 5.01255 5.01994 5.03624 5.19123 5.20915 5.26770 5.29814 5.41013 5.46305 5.52711 5.53955 5.61303 5.64572 5.73692 5.81595 5.83765 5.88966 5.92790 5.99397 6.07344 6.08802 6.14143 6.25621 6.30275 6.47262 6.56075 6.71776 6.89029 7.00101 7.17341 7.25973 7.33948 7.72163 7.90738 8.91881 9.60500 10.64151 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.003080 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.349140 B = 9087.978954 C =10413.565605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.998 5.998 3 C 0.151 3.849 4 C -0.124 4.124 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.132 4.132 9 S 2.783 3.217 10 O -0.971 6.971 11 O -0.987 6.987 12 N -1.056 6.056 13 C 0.036 3.964 14 C -0.102 4.102 15 C -0.172 4.172 16 C 0.150 3.850 17 O -0.173 6.173 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.221 4.221 27 C -0.073 4.073 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.414 0.586 43 H 0.143 0.857 44 H 0.123 0.877 45 H 0.271 0.729 46 H 0.131 0.869 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.921 11.181 12.502 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.837 5.837 3 C 0.045 3.955 4 C -0.163 4.163 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.156 4.156 8 C -0.171 4.171 9 S 2.793 3.207 10 O -0.954 6.954 11 O -0.971 6.971 12 N -0.809 5.809 13 C -0.059 4.059 14 C -0.123 4.123 15 C -0.192 4.192 16 C 0.095 3.905 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.241 4.241 27 C -0.095 4.095 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.249 0.751 43 H 0.160 0.840 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.148 0.852 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.508 10.485 13.270 19.911 hybrid contribution 0.474 0.614 -1.477 1.668 sum 10.981 11.099 11.793 19.567 Atomic orbital electron populations 1.21499 0.78069 1.03950 1.01764 1.57769 1.15550 1.21184 1.89194 1.20907 0.96057 0.83074 0.95462 1.21842 1.00867 0.95601 0.98006 1.21518 1.00570 0.95828 0.97682 1.21566 1.01488 0.98234 0.94586 1.21508 1.00027 0.95606 0.98467 1.21943 1.01617 0.96277 0.97286 1.02138 0.72721 0.73051 0.72801 1.93578 1.64641 1.56743 1.80461 1.93585 1.44902 1.85742 1.72850 1.53265 1.14012 1.85273 1.28352 1.16847 0.91641 1.05421 0.91978 1.21291 0.93708 0.96789 1.00501 1.20116 1.01039 1.05545 0.92536 1.19464 0.88635 0.92572 0.89828 1.84007 1.36603 1.66747 1.20215 1.21315 1.00766 1.39185 0.85551 0.89020 1.25300 0.94449 0.96906 0.99819 1.70045 1.03451 1.40454 1.35352 0.85711 0.78205 0.79137 0.80379 1.19830 1.20211 1.19180 1.21045 0.96139 1.05506 1.01393 1.20676 0.98134 0.97838 0.92864 0.92719 0.90918 0.90237 0.88766 0.91192 0.91530 0.91756 0.91740 0.92039 0.91856 0.91885 0.91581 0.91103 0.91050 0.75139 0.83991 0.85852 0.91891 0.85155 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 9.18 59.85 0.55 1.60 16 2 N -1.00 -11.81 3.13 -114.60 -0.36 -12.16 16 3 C 0.15 1.55 2.52 -67.93 -0.17 1.38 16 4 C -0.12 -1.10 5.13 -26.73 -0.14 -1.23 16 5 C -0.12 -0.88 5.92 -26.74 -0.16 -1.04 16 6 C -0.12 -0.88 5.92 -26.74 -0.16 -1.04 16 7 C -0.12 -0.95 5.92 -26.76 -0.16 -1.11 16 8 C -0.13 -1.28 5.26 -26.76 -0.14 -1.42 16 9 S 2.78 38.87 5.94 -107.50 -0.64 38.23 16 10 O -0.97 -16.05 14.21 -57.17 -0.81 -16.86 16 11 O -0.99 -15.27 16.83 -57.17 -0.96 -16.23 16 12 N -1.06 -14.09 5.82 32.45 0.19 -13.90 16 13 C 0.04 0.58 6.26 -83.70 -0.52 0.05 16 14 C -0.10 -1.81 8.28 -39.40 -0.33 -2.13 16 15 C -0.17 -3.46 9.98 -39.42 -0.39 -3.86 16 16 C 0.15 3.38 6.65 -39.09 -0.26 3.12 16 17 O -0.17 -4.68 9.76 -0.05 0.00 -4.68 16 18 C -0.39 -10.41 9.44 30.87 0.29 -10.12 16 19 H 0.09 2.23 5.29 -52.49 -0.28 1.95 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -24.32 13.67 55.48 0.76 -23.56 16 22 Si 0.94 19.68 29.55 -169.99 -5.02 14.65 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 C -0.22 -4.37 9.13 -39.42 -0.36 -4.73 16 27 C -0.07 -1.21 9.96 -39.40 -0.39 -1.60 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.73 6.69 -51.93 -0.35 0.38 16 30 H 0.08 1.03 6.68 -51.93 -0.35 0.68 16 31 H 0.09 1.00 6.98 -51.93 -0.36 0.64 16 32 H 0.07 0.59 7.55 -51.93 -0.39 0.20 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.71 6.87 -51.93 -0.36 0.36 16 42 H 0.41 4.57 8.96 -34.47 -0.31 4.26 16 43 H 0.14 2.47 5.73 -52.48 -0.30 2.17 16 44 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.13 2.59 5.71 -52.49 -0.30 2.29 16 47 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 383.44 15.07 5.78 5.78 Total: -1.00 -31.46 383.44 -10.28 -41.74 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.78 Total: 8.17 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.44 Total: -21.18 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.59 Total: -49.62 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.77 Total: -37.78 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 38.87 SS G_CDS: -0.64 Total: 38.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.46 -10.28 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.378 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds