Wall clock time and date at job start Tue Mar 31 2020 05:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00056 * 2 1 4 4 C 1.53009 * 109.47176 * 54.97888 * 3 2 1 5 5 C 1.52996 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47229 * 59.99561 * 5 4 3 7 7 C 1.52996 * 109.47321 * 300.00083 * 6 5 4 8 8 C 1.52997 * 109.47219 * 294.97878 * 3 2 1 9 9 S 1.65599 * 119.99965 * 179.97438 * 2 1 3 10 10 O 1.42102 * 106.40368 * 341.75167 * 9 2 1 11 11 O 1.42098 * 106.40370 * 208.83366 * 9 2 1 12 12 N 1.65600 * 107.21683 * 95.29470 * 9 2 1 13 13 C 1.39781 * 119.99664 * 299.08902 * 12 9 2 14 14 C 1.38956 * 120.00769 * 313.54061 * 13 12 9 15 15 C 1.38006 * 119.99566 * 179.74421 * 14 13 12 16 16 C 1.38903 * 120.00434 * 0.51164 * 15 14 13 17 17 O 1.35799 * 119.99521 * 179.74840 * 16 15 14 18 18 C 1.34811 * 117.00247 * 185.88902 * 17 16 15 19 19 H 1.08000 * 119.99652 * 5.40259 * 18 17 16 20 20 C 1.38619 * 120.00367 * 185.40594 * 18 17 16 21 21 N 1.31582 * 119.99613 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00395 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47059 * 90.00011 * 22 20 18 24 24 H 1.48502 * 109.47157 * 210.00454 * 22 20 18 25 25 H 1.48501 * 109.46747 * 330.00158 * 22 20 18 26 26 C 1.38898 * 120.01467 * 359.76385 * 16 15 14 27 27 C 1.38010 * 120.00084 * 359.97438 * 26 16 15 28 28 H 1.09003 * 109.47344 * 270.00167 * 1 2 3 29 29 H 1.09004 * 109.47009 * 29.99679 * 1 2 3 30 30 H 1.09001 * 109.47267 * 150.00018 * 1 2 3 31 31 H 1.09000 * 109.47364 * 174.97136 * 3 2 1 32 32 H 1.09000 * 109.46360 * 299.99863 * 4 3 2 33 33 H 1.09001 * 109.46868 * 59.99861 * 4 3 2 34 34 H 1.09000 * 109.46875 * 299.99828 * 5 4 3 35 35 H 1.08996 * 109.47140 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47483 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.46974 * 60.00328 * 6 5 4 38 38 H 1.09000 * 109.47297 * 300.00047 * 7 6 5 39 39 H 1.09008 * 109.47369 * 179.97438 * 7 6 5 40 40 H 1.09005 * 109.46923 * 300.00140 * 8 3 2 41 41 H 1.09000 * 109.47177 * 60.00054 * 8 3 2 42 42 H 0.96994 * 120.00087 * 119.09027 * 12 9 2 43 43 H 1.08005 * 120.00126 * 359.97343 * 14 13 12 44 44 H 1.08003 * 120.00174 * 180.25645 * 15 14 13 45 45 H 0.97001 * 120.00138 * 180.02562 * 21 20 18 46 46 H 1.07993 * 120.00305 * 179.97438 * 26 16 15 47 47 H 1.08004 * 119.99974 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.7356 2.1244 1.1814 5 6 2.5001 3.4496 1.1810 6 6 2.2271 4.1955 -0.1266 7 6 2.6891 3.3400 -1.3079 8 6 1.9250 2.0150 -1.3075 9 16 2.2930 -1.4341 0.0006 10 8 1.3724 -2.4288 0.4279 11 8 3.5278 -1.1843 0.6579 12 7 2.6645 -1.7863 -1.5743 13 6 1.6418 -1.9669 -2.5099 14 6 0.5489 -2.7669 -2.1993 15 6 -0.4631 -2.9407 -3.1213 16 6 -0.3843 -2.3246 -4.3637 17 8 -1.3778 -2.4999 -5.2727 18 6 -1.1840 -1.9765 -6.4999 19 1 -0.2362 -1.5231 -6.7500 20 6 -2.2011 -2.0203 -7.4406 21 7 -3.3560 -2.5722 -7.1356 22 14 -1.9329 -1.2944 -9.1408 23 1 -1.3890 -2.3394 -10.0449 24 1 -3.2261 -0.7995 -9.6774 25 1 -0.9702 -0.1672 -9.0514 26 6 0.7108 -1.5295 -4.6767 27 6 1.7205 -1.3510 -3.7530 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 3.2657 1.0716 0.0901 32 1 0.6674 2.3216 1.0913 33 1 1.9297 1.5927 2.1129 34 1 3.5684 3.2527 1.2707 35 1 2.1714 4.0590 2.0228 36 1 2.7722 5.1395 -0.1271 37 1 1.1588 4.3924 -0.2163 38 1 3.7574 3.1431 -1.2181 39 1 2.4941 3.8712 -2.2396 40 1 2.2541 1.4054 -2.1492 41 1 0.8568 2.2122 -1.3975 42 1 3.5916 -1.8674 -1.8474 43 1 0.4898 -3.2496 -1.2349 44 1 -1.3146 -3.5591 -2.8784 45 1 -4.0677 -2.6032 -7.7940 46 1 0.7721 -1.0509 -5.6429 47 1 2.5722 -0.7331 -3.9965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071916539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:05 Heat of formation + Delta-G solvation = -110.482592 kcal Electronic energy + Delta-G solvation = -30486.651444 eV Core-core repulsion = 26374.447364 eV Total energy + Delta-G solvation = -4112.204080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87289 -39.93472 -38.93722 -38.29407 -37.07313 -36.02874 -35.34917 -34.07455 -31.88173 -31.62965 -30.48100 -29.12675 -27.23100 -27.19490 -23.81269 -23.47614 -23.07812 -22.99649 -20.72079 -20.40668 -19.87685 -19.19501 -18.76348 -18.57327 -18.06598 -17.22950 -16.39309 -16.17263 -16.11349 -15.52983 -15.36002 -15.30996 -15.17515 -14.99245 -14.82916 -14.60045 -14.46032 -14.08951 -13.91881 -13.71623 -13.58864 -13.38672 -13.25667 -13.18664 -13.09754 -13.02826 -12.80794 -12.73484 -12.67193 -12.19337 -12.08476 -12.07039 -12.00970 -11.61466 -11.40385 -11.23339 -11.12879 -11.00537 -10.67563 -10.01687 -9.86444 -8.75634 -8.44424 -6.11400 -0.58459 0.51220 0.61753 1.38879 1.47083 1.55564 1.71874 2.19771 2.39244 2.77321 3.15062 3.26580 3.50712 3.61135 3.83635 3.86604 4.03786 4.11200 4.18154 4.22150 4.32304 4.35501 4.45167 4.51617 4.58273 4.62628 4.69219 4.72790 4.74259 4.79341 4.90290 4.98599 5.02717 5.13534 5.19256 5.22774 5.23780 5.27612 5.32163 5.39631 5.40234 5.45583 5.56794 5.60516 5.65309 5.69101 5.94009 6.03844 6.26870 7.00453 7.80032 8.78396 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.012501 B = 0.003080 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.349140 B = 9087.978954 C =10413.565605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.994 5.994 3 C 0.146 3.854 4 C -0.124 4.124 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.116 4.116 8 C -0.131 4.131 9 S 2.796 3.204 10 O -0.997 6.997 11 O -0.996 6.996 12 N -1.049 6.049 13 C 0.070 3.930 14 C -0.102 4.102 15 C -0.178 4.178 16 C 0.116 3.884 17 O -0.227 6.227 18 C -0.410 4.410 19 H 0.106 0.894 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.016 2.984 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.249 1.249 26 C -0.218 4.218 27 C -0.063 4.063 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.429 0.571 43 H 0.149 0.851 44 H 0.118 0.882 45 H 0.272 0.728 46 H 0.130 0.870 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.597 13.425 13.119 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.834 5.834 3 C 0.041 3.959 4 C -0.163 4.163 5 C -0.154 4.154 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.170 4.170 9 S 2.806 3.194 10 O -0.980 6.980 11 O -0.980 6.980 12 N -0.803 5.803 13 C -0.026 4.026 14 C -0.123 4.123 15 C -0.198 4.198 16 C 0.065 3.935 17 O -0.134 6.134 18 C -0.486 4.486 19 H 0.123 0.877 20 C -0.220 4.220 21 N -0.557 5.557 22 Si 0.836 3.164 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.173 1.173 26 C -0.238 4.238 27 C -0.085 4.085 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.267 0.733 43 H 0.166 0.834 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.147 0.853 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.261 12.730 13.931 23.065 hybrid contribution -0.121 -0.054 -1.304 1.310 sum 13.139 12.676 12.628 22.198 Atomic orbital electron populations 1.21585 0.77654 1.03719 1.02724 1.57625 1.15730 1.21095 1.88979 1.21108 0.95804 0.82418 0.96581 1.21854 1.01362 0.96044 0.97033 1.21518 1.00451 0.95119 0.98279 1.21559 1.01589 0.98524 0.94019 1.21509 1.00085 0.94805 0.99060 1.21929 1.01605 0.96962 0.96472 1.01562 0.72209 0.73040 0.72571 1.93548 1.65270 1.58294 1.80887 1.93576 1.45527 1.85981 1.72950 1.53194 1.14323 1.85210 1.27617 1.16865 0.91009 1.02706 0.91978 1.21375 0.93683 0.97013 1.00184 1.20219 1.01684 1.05480 0.92424 1.19896 0.89144 0.94283 0.90198 1.83976 1.38867 1.69346 1.21171 1.21818 1.01573 1.39121 0.86067 0.87664 1.26547 0.93963 0.97276 1.04173 1.70196 1.04852 1.43603 1.37091 0.84617 0.78458 0.78753 0.74618 1.19121 1.19950 1.17257 1.21156 0.95953 1.04691 1.02027 1.20958 0.98234 0.97414 0.91847 0.91296 0.89558 0.92035 0.88873 0.90796 0.91958 0.91601 0.90643 0.90901 0.91969 0.91371 0.91261 0.91854 0.91470 0.73298 0.83353 0.86411 0.91909 0.85259 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.87 9.18 127.77 1.17 3.04 16 2 N -0.99 -21.42 3.13 -516.49 -1.62 -23.03 16 3 C 0.15 2.64 2.52 44.99 0.11 2.75 16 4 C -0.12 -1.89 5.13 30.60 0.16 -1.73 16 5 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 6 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 7 C -0.12 -1.55 5.92 30.58 0.18 -1.37 16 8 C -0.13 -2.19 5.26 30.58 0.16 -2.03 16 9 S 2.80 72.13 5.94 -56.49 -0.34 71.79 16 10 O -1.00 -31.50 14.21 -128.00 -1.82 -33.32 16 11 O -1.00 -28.45 16.83 -128.00 -2.15 -30.60 16 12 N -1.05 -24.91 5.82 -51.25 -0.30 -25.21 16 13 C 0.07 2.07 6.26 38.22 0.24 2.31 16 14 C -0.10 -3.51 8.28 22.39 0.19 -3.33 16 15 C -0.18 -7.32 9.98 22.37 0.22 -7.10 16 16 C 0.12 5.38 6.65 22.59 0.15 5.53 16 17 O -0.23 -12.97 9.76 -23.08 -0.23 -13.19 16 18 C -0.41 -22.53 9.44 67.91 0.64 -21.89 16 19 H 0.11 5.20 5.29 -2.91 -0.02 5.18 16 20 C -0.02 -1.19 5.49 84.82 0.47 -0.72 16 21 N -0.92 -54.76 13.67 21.61 0.30 -54.46 16 22 Si 1.02 40.90 29.55 68.60 2.03 42.93 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 26 C -0.22 -8.48 9.13 22.37 0.20 -8.27 16 27 C -0.06 -1.90 9.96 22.39 0.22 -1.67 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.59 6.69 -2.38 -0.02 1.57 16 30 H 0.06 1.54 6.68 -2.39 -0.02 1.52 16 31 H 0.09 1.73 6.98 -2.39 -0.02 1.71 16 32 H 0.07 1.07 7.55 -2.39 -0.02 1.05 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.07 1.19 6.87 -2.39 -0.02 1.17 16 42 H 0.43 7.89 8.96 -96.75 -0.87 7.02 16 43 H 0.15 5.03 5.73 -2.91 -0.02 5.01 16 44 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 45 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.13 5.04 5.71 -2.91 -0.02 5.02 16 47 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -70.95 383.44 0.48 -70.47 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.13 Total: 31.56 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 4.48 Total: -36.92 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -1.62 Total: -102.70 kcal Atomic # 8 Polarization: -72.92 SS G_CDS: -4.20 Total: -77.11 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 72.13 SS G_CDS: -0.34 Total: 71.79 kcal Total: -70.95 0.48 -70.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071916539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.018 kcal (2) G-P(sol) polarization free energy of solvation -70.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds