Wall clock time and date at job start Tue Mar 31 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33247 * 125.52677 * 2 1 4 4 C 1.30831 * 109.82567 * 179.79851 * 3 2 1 5 5 C 1.50704 * 125.96013 * 180.23353 * 4 3 2 6 6 N 1.34429 * 108.07928 * 0.38405 * 4 3 2 7 7 C 1.46501 * 126.82349 * 179.89130 * 6 4 3 8 8 H 1.08998 * 109.49641 * 359.64323 * 7 6 4 9 9 C 1.53034 * 109.49828 * 119.70914 * 7 6 4 10 10 C 1.53047 * 109.53756 * 181.34764 * 9 7 6 11 11 C 1.53191 * 109.31232 * 298.63563 * 10 9 7 12 12 N 1.46922 * 108.77671 * 54.63563 * 11 10 9 13 13 C 1.34778 * 120.63268 * 126.36997 * 12 11 10 14 14 O 1.21549 * 119.99867 * 185.84620 * 13 12 11 15 15 C 1.47884 * 119.99684 * 5.83596 * 13 12 11 16 16 C 1.39915 * 120.02491 * 28.84977 * 15 13 12 17 17 C 1.38331 * 120.35653 * 180.23835 * 16 15 13 18 18 C 1.37749 * 120.41396 * 359.47999 * 17 16 15 19 19 C 1.40754 * 120.03768 * 0.24198 * 18 17 16 20 20 C 1.41435 * 120.17736 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00255 * 26.41177 * 20 19 18 22 22 C 1.39941 * 120.00078 * 206.41169 * 20 19 18 23 23 N 1.30827 * 119.99392 * 15.95067 * 22 20 19 24 24 Si 1.86797 * 120.00317 * 195.94129 * 22 20 19 25 25 H 1.48503 * 109.46863 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46853 * 120.00101 * 24 22 20 27 27 H 1.48492 * 109.47634 * 240.00491 * 24 22 20 28 28 C 1.38994 * 120.02334 * 208.54821 * 15 13 12 29 29 C 1.46929 * 118.73995 * 306.64088 * 12 11 10 30 30 N 1.30716 * 125.52581 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46977 * 269.95734 * 1 2 3 32 32 H 1.08997 * 109.47120 * 29.95286 * 1 2 3 33 33 H 1.08998 * 109.47540 * 149.95590 * 1 2 3 34 34 H 1.08998 * 109.46926 * 270.17234 * 5 4 3 35 35 H 1.08997 * 109.46943 * 30.17746 * 5 4 3 36 36 H 1.09000 * 109.47110 * 150.17619 * 5 4 3 37 37 H 1.09008 * 109.45942 * 61.33017 * 9 7 6 38 38 H 1.08990 * 109.44891 * 301.36550 * 9 7 6 39 39 H 1.08996 * 109.49512 * 178.68498 * 10 9 7 40 40 H 1.08993 * 109.52193 * 58.60544 * 10 9 7 41 41 H 1.09002 * 109.58949 * 294.84559 * 11 10 9 42 42 H 1.09002 * 109.70349 * 174.49061 * 11 10 9 43 43 H 1.07997 * 119.82611 * 359.97438 * 16 15 13 44 44 H 1.08004 * 119.79335 * 179.76738 * 17 16 15 45 45 H 1.07998 * 119.98634 * 180.25856 * 18 17 16 46 46 H 0.97008 * 119.99425 * 179.97438 * 23 22 20 47 47 H 1.07997 * 120.20401 * 0.04979 * 28 15 13 48 48 H 1.09003 * 109.58860 * 173.14244 * 29 12 11 49 49 H 1.09005 * 109.58730 * 293.57226 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5408 0.7304 0.0043 5 6 4.7228 1.6652 0.0108 6 7 3.5966 -0.6127 -0.0013 7 6 4.8047 -1.4414 -0.0016 8 1 5.6859 -0.7998 -0.0027 9 6 4.8181 -2.3253 1.2476 10 6 6.0962 -3.1670 1.2654 11 6 6.1228 -4.0739 0.0310 12 7 5.9644 -3.2426 -1.1700 13 6 6.8551 -3.3167 -2.1788 14 8 6.7740 -2.5501 -3.1186 15 6 7.9311 -4.3305 -2.1422 16 6 7.7292 -5.5417 -1.4714 17 6 8.7328 -6.4928 -1.4286 18 6 9.9382 -6.2634 -2.0546 19 6 10.1575 -5.0533 -2.7392 20 6 11.3942 -4.8144 -3.3825 21 1 11.9927 -5.6445 -3.7275 22 6 11.8424 -3.5023 -3.5720 23 7 11.2984 -2.5216 -2.8982 24 14 13.2174 -3.1512 -4.7866 25 1 13.6586 -4.4220 -5.4157 26 1 12.7251 -2.2241 -5.8372 27 1 14.3611 -2.5283 -4.0732 28 6 9.1414 -4.0835 -2.7794 29 6 4.8198 -2.3246 -1.2479 30 7 2.2666 -1.0638 -0.0005 31 1 -0.3633 -0.0008 1.0277 32 1 -0.3633 0.8904 -0.5131 33 1 -0.3634 -0.8896 -0.5145 34 1 5.0099 1.8949 -1.0153 35 1 4.4546 2.5864 0.5280 36 1 5.5588 1.1903 0.5243 37 1 3.9497 -2.9840 1.2357 38 1 4.7849 -1.6967 2.1374 39 1 6.1162 -3.7791 2.1670 40 1 6.9655 -2.5096 1.2526 41 1 5.3056 -4.7929 0.0882 42 1 7.0739 -4.6045 -0.0147 43 1 6.7864 -5.7334 -0.9808 44 1 8.5685 -7.4231 -0.9051 45 1 10.7154 -7.0125 -2.0203 46 1 11.6094 -1.6121 -3.0293 47 1 9.3001 -3.1517 -3.3018 48 1 4.9125 -1.6995 -2.1361 49 1 3.8941 -2.8981 -1.2972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072235469.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:04 Heat of formation + Delta-G solvation = 80.574576 kcal Electronic energy + Delta-G solvation = -31377.137473 eV Core-core repulsion = 27305.900148 eV Total energy + Delta-G solvation = -4071.237326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.29753 -40.08286 -37.74740 -36.90037 -34.71060 -33.78956 -32.99663 -32.17733 -31.04880 -29.97476 -29.56586 -29.19257 -27.37151 -25.67251 -25.49779 -23.46346 -22.33809 -21.36202 -21.02056 -20.75270 -20.01584 -18.84330 -17.74866 -16.90976 -16.24980 -16.02245 -15.79320 -15.25161 -14.99805 -14.86150 -14.48260 -14.34768 -14.26965 -13.70487 -13.69020 -13.54521 -13.27870 -13.16105 -12.99295 -12.78968 -12.72646 -12.61154 -12.55391 -12.43820 -11.96083 -11.82337 -11.61596 -11.27967 -11.21723 -11.16582 -11.11651 -10.94956 -10.56871 -10.37563 -10.14132 -10.06146 -9.80087 -9.71229 -9.44462 -9.29882 -9.10771 -8.46635 -7.70055 -7.56411 -6.88573 -4.50131 1.48181 2.05353 2.13637 2.71438 2.76181 3.02949 3.06458 3.08463 3.28457 3.63538 3.85864 3.87025 4.13069 4.44053 4.49726 4.51619 4.67668 4.73360 4.90806 4.98278 5.11408 5.20416 5.22540 5.33870 5.35262 5.47384 5.49111 5.50682 5.58211 5.59791 5.67478 5.73468 5.81186 5.85762 5.99225 6.04236 6.13386 6.20669 6.22255 6.37267 6.57150 6.65443 6.78845 6.89789 6.93483 7.11736 7.28693 7.54467 7.66194 7.76761 7.89765 8.02326 8.07607 8.41293 8.69418 8.72705 8.75901 10.06687 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.002551 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.057258 B =10973.102800 C =12059.631372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.215 3.785 3 N -0.545 5.545 4 C 0.280 3.720 5 C -0.080 4.080 6 N -0.367 5.367 7 C 0.145 3.855 8 H 0.110 0.890 9 C -0.123 4.123 10 C -0.133 4.133 11 C 0.079 3.921 12 N -0.612 5.612 13 C 0.572 3.428 14 O -0.545 6.545 15 C -0.124 4.124 16 C -0.231 4.231 17 C -0.097 4.097 18 C -0.209 4.209 19 C 0.101 3.899 20 C -0.458 4.458 21 H 0.082 0.918 22 C 0.074 3.926 23 N -0.790 5.790 24 Si 0.911 3.089 25 H -0.259 1.259 26 H -0.270 1.270 27 H -0.274 1.274 28 C -0.092 4.092 29 C 0.112 3.888 30 N -0.315 5.315 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.134 0.866 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.283 0.717 47 H 0.130 0.870 48 H 0.094 0.906 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.321 4.317 9.466 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 N -0.275 5.275 4 C 0.004 3.996 5 C -0.139 4.139 6 N -0.158 5.158 7 C 0.042 3.958 8 H 0.128 0.872 9 C -0.161 4.161 10 C -0.172 4.172 11 C -0.043 4.043 12 N -0.347 5.347 13 C 0.364 3.636 14 O -0.423 6.423 15 C -0.127 4.127 16 C -0.251 4.251 17 C -0.115 4.115 18 C -0.229 4.229 19 C 0.098 3.902 20 C -0.487 4.487 21 H 0.100 0.900 22 C -0.145 4.145 23 N -0.414 5.414 24 Si 0.735 3.265 25 H -0.183 1.183 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.112 4.112 29 C -0.012 4.012 30 N -0.143 5.143 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.151 0.849 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.148 0.852 48 H 0.113 0.887 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.650 4.533 8.969 16.156 hybrid contribution 0.795 0.296 -0.342 0.914 sum -11.855 4.829 8.628 15.437 Atomic orbital electron populations 1.20048 0.84080 1.03889 1.03466 1.24255 0.98172 0.85849 0.98443 1.70351 0.99741 1.30929 1.26449 1.24364 0.95281 0.83854 0.96054 1.20432 0.91310 0.97370 1.04837 1.50394 1.05690 1.05317 1.54411 1.21806 0.82898 0.93033 0.98089 0.87211 1.21860 0.99950 0.98546 0.95757 1.21983 0.97084 0.99024 0.99110 1.22737 1.05679 0.93020 0.82853 1.47883 1.26024 1.41432 1.19342 1.19001 0.80491 0.83271 0.80795 1.90692 1.73717 1.43224 1.34653 1.19357 0.94483 0.94415 1.04422 1.20740 0.99821 0.95593 1.08941 1.20481 0.94136 0.97180 0.99744 1.21140 0.97376 1.00025 1.04364 1.17601 0.92558 0.90613 0.89402 1.19633 1.03379 0.92673 1.32991 0.89985 1.25949 0.97827 0.95900 0.94818 1.69777 1.37661 1.01473 1.32540 0.86216 0.80177 0.79566 0.80574 1.18305 1.19547 1.19886 1.21547 0.90014 1.01102 0.98559 1.21515 0.90018 0.92689 0.96999 1.77966 0.86684 1.22603 1.27077 0.90090 0.89751 0.90122 0.88794 0.88426 0.89889 0.90310 0.91399 0.89778 0.90840 0.91692 0.84853 0.87392 0.88725 0.88538 0.90595 0.85250 0.88736 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.51 36.01 0.38 -0.11 16 2 C 0.21 2.83 8.14 -156.85 -1.28 1.55 16 3 N -0.55 -7.55 11.19 -8.16 -0.09 -7.64 16 4 C 0.28 3.54 7.98 -155.69 -1.24 2.30 16 5 C -0.08 -0.70 10.04 36.01 0.36 -0.34 16 6 N -0.37 -4.85 3.29 -51.97 -0.17 -5.02 16 7 C 0.15 1.80 3.08 -68.03 -0.21 1.59 16 8 H 0.11 1.29 6.74 -51.93 -0.35 0.94 16 9 C -0.12 -1.33 5.45 -26.69 -0.15 -1.47 16 10 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 11 C 0.08 1.05 4.70 -3.71 -0.02 1.04 16 12 N -0.61 -10.06 2.98 -174.12 -0.52 -10.58 16 13 C 0.57 12.11 7.46 -12.31 -0.09 12.02 16 14 O -0.55 -13.24 16.09 5.32 0.09 -13.16 16 15 C -0.12 -2.77 5.48 -105.04 -0.58 -3.35 16 16 C -0.23 -4.55 7.42 -38.92 -0.29 -4.84 16 17 C -0.10 -1.94 10.01 -39.73 -0.40 -2.34 16 18 C -0.21 -4.72 9.78 -38.81 -0.38 -5.10 16 19 C 0.10 2.56 5.56 -106.87 -0.59 1.96 16 20 C -0.46 -11.61 9.05 -37.73 -0.34 -11.95 16 21 H 0.08 1.99 7.89 -52.49 -0.41 1.57 16 22 C 0.07 1.79 5.16 -17.34 -0.09 1.70 16 23 N -0.79 -19.93 10.97 55.55 0.61 -19.32 16 24 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 28 C -0.09 -2.35 8.22 -38.44 -0.32 -2.66 16 29 C 0.11 1.67 5.98 -3.93 -0.02 1.65 16 30 N -0.31 -4.46 12.60 32.42 0.41 -4.05 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.62 7.14 -51.93 -0.37 0.25 16 37 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.77 8.00 -51.93 -0.42 0.35 16 42 H 0.13 2.00 4.04 -51.93 -0.21 1.79 16 43 H 0.11 1.79 5.30 -52.49 -0.28 1.51 16 44 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 45 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 46 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 47 H 0.13 3.59 6.07 -52.49 -0.32 3.27 16 48 H 0.09 1.61 7.00 -51.93 -0.36 1.25 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -30.81 396.14 -11.08 -41.88 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.93 Total: 8.64 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -5.41 Total: -9.95 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.24 Total: -46.62 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.81 -11.08 -41.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072235469.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.458 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds