Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35886 * 117.00196 * 2 1 4 4 C 1.39844 * 119.56643 * 0.02562 * 3 2 1 5 5 C 1.35992 * 120.93219 * 180.23269 * 4 3 2 6 6 C 1.40594 * 119.72570 * 359.50308 * 5 4 3 7 7 C 1.40521 * 121.22011 * 180.22351 * 6 5 4 8 8 C 1.36102 * 119.67576 * 180.26999 * 7 6 5 9 9 C 1.50701 * 119.50577 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47200 * 89.99759 * 9 8 7 11 11 C 1.34778 * 119.99673 * 179.97438 * 10 9 8 12 12 O 1.21579 * 120.00428 * 354.82366 * 11 10 9 13 13 N 1.34775 * 119.99555 * 174.82028 * 11 10 9 14 14 C 1.46499 * 119.99772 * 184.86932 * 13 11 10 15 15 C 1.50702 * 109.47156 * 89.99888 * 14 13 11 16 16 H 1.07996 * 120.00359 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99972 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99878 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47251 * 59.99878 * 19 17 15 21 21 H 1.48495 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47019 * 300.00161 * 19 17 15 23 23 C 1.46499 * 120.00338 * 4.86409 * 13 11 10 24 24 C 1.53005 * 117.50319 * 193.36158 * 23 13 11 25 25 C 1.52999 * 117.49778 * 124.70282 * 23 13 11 26 26 C 1.39375 * 120.99497 * 359.97438 * 8 7 6 27 27 C 1.36092 * 120.97845 * 0.02562 * 26 8 7 28 28 C 1.40576 * 119.65488 * 359.97438 * 27 26 8 29 29 C 1.36572 * 119.56603 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47244 * 59.99419 * 1 2 3 31 31 H 1.08998 * 109.47406 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47042 * 300.00190 * 1 2 3 33 33 H 1.07994 * 119.53746 * 359.95243 * 4 3 2 34 34 H 1.07991 * 120.13628 * 179.72449 * 5 4 3 35 35 H 1.07999 * 120.16510 * 0.28602 * 7 6 5 36 36 H 1.09004 * 109.46943 * 209.99409 * 9 8 7 37 37 H 1.08993 * 109.47015 * 329.99528 * 9 8 7 38 38 H 0.97003 * 119.99813 * 359.97438 * 10 9 8 39 39 H 1.09001 * 109.47270 * 209.99817 * 14 13 11 40 40 H 1.08998 * 109.47522 * 329.99875 * 14 13 11 41 41 H 0.97004 * 119.99839 * 179.97438 * 18 17 15 42 42 H 1.08999 * 115.54889 * 339.03636 * 23 13 11 43 43 H 1.09006 * 117.49604 * 0.02562 * 24 23 13 44 44 H 1.08991 * 117.50210 * 145.02144 * 24 23 13 45 45 H 1.09006 * 117.49974 * 214.98394 * 25 23 13 46 46 H 1.09002 * 117.49830 * 359.97438 * 25 23 13 47 47 H 1.07999 * 119.51489 * 180.02562 * 26 8 7 48 48 H 1.07998 * 120.17707 * 180.02562 * 27 26 8 49 49 H 1.08004 * 120.18920 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2754 2.3778 0.0005 5 6 1.8638 3.6038 -0.0042 6 6 3.2661 3.7041 0.0009 7 6 3.9069 4.9547 0.0009 8 6 5.2666 5.0152 0.0003 9 6 5.9498 6.3585 -0.0002 10 7 6.1717 6.7940 1.3808 11 6 6.7730 7.9749 1.6265 12 8 7.2156 8.6349 0.7064 13 7 6.8837 8.4242 2.8924 14 6 7.4404 9.7543 3.1515 15 6 6.3290 10.7721 3.1547 16 1 5.3099 10.4595 2.9816 17 6 6.6131 12.1025 3.3799 18 7 7.8539 12.4830 3.5922 19 14 5.2354 13.3640 3.3846 20 1 4.2547 13.0220 4.4461 21 1 5.7995 14.7120 3.6484 22 1 4.5566 13.3606 2.0639 23 6 6.4472 7.5826 4.0092 24 6 6.3016 8.2470 5.3798 25 6 7.4655 7.2893 5.1128 26 6 6.0367 3.8535 0.0002 27 6 5.4512 2.6250 0.0002 28 6 4.0492 2.5227 0.0008 29 6 3.4102 1.2718 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.1980 2.3044 0.0002 34 1 1.2564 4.4967 -0.0082 35 1 3.3234 5.8635 0.0017 36 1 6.9077 6.2787 -0.5144 37 1 5.3211 7.0856 -0.5140 38 1 5.8859 6.2325 2.1183 39 1 7.9385 9.7572 4.1210 40 1 8.1603 10.0051 2.3724 41 1 8.0539 13.4190 3.7502 42 1 5.7396 6.7935 3.7547 43 1 6.5301 9.3105 5.4504 44 1 5.4985 7.8948 6.0270 45 1 7.4276 6.3074 5.5846 46 1 8.4603 7.7223 5.0077 47 1 7.1140 3.9294 0.0002 48 1 6.0605 1.7333 0.0005 49 1 3.9946 0.3635 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072273219.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = 13.754891 kcal Electronic energy + Delta-G solvation = -30130.902132 eV Core-core repulsion = 26024.474536 eV Total energy + Delta-G solvation = -4106.427596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97095 -39.64506 -39.12305 -36.99503 -36.22700 -34.15336 -33.13428 -32.82822 -31.90286 -30.33282 -29.94954 -27.86830 -27.13478 -25.43840 -23.60759 -22.90801 -22.29321 -22.06848 -21.81900 -21.56605 -19.01287 -18.57115 -17.87918 -17.35334 -16.80002 -16.36965 -16.14050 -15.87349 -15.68474 -15.11170 -14.88075 -14.62993 -14.47153 -14.26528 -13.91191 -13.76007 -13.67666 -13.45956 -13.33722 -13.00296 -12.92488 -12.53587 -12.16863 -12.14189 -11.79098 -11.66508 -11.34037 -11.29134 -11.00283 -10.96220 -10.91232 -10.83254 -10.59124 -10.46754 -10.17224 -10.07031 -10.01476 -9.50380 -9.17081 -8.66540 -8.60175 -8.39057 -7.93356 -7.40250 -5.99571 -4.03790 0.27224 0.72527 1.80205 2.62525 2.89415 3.34107 3.38560 3.40248 3.49222 3.87542 3.90099 4.26302 4.40406 4.47247 4.53875 4.54869 4.55654 4.57490 4.71804 4.74298 4.89231 4.96238 5.01343 5.05961 5.11747 5.28095 5.33504 5.37436 5.40501 5.50507 5.53697 5.60457 5.71016 5.85351 5.92523 5.96653 6.00031 6.03541 6.13349 6.23959 6.41796 6.47528 6.47739 6.70819 6.80591 6.90554 6.93920 7.00317 7.44716 7.60382 7.79847 8.00485 8.29125 8.77333 8.97742 9.40536 9.61954 11.07806 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.002044 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.894315 B =13696.503448 C =14063.183700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.195 4.195 5 C -0.059 4.059 6 C -0.084 4.084 7 C -0.072 4.072 8 C -0.107 4.107 9 C 0.180 3.820 10 N -0.754 5.754 11 C 0.706 3.294 12 O -0.585 6.585 13 N -0.585 5.585 14 C 0.259 3.741 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.078 3.922 24 C -0.175 4.175 25 C -0.202 4.202 26 C -0.083 4.083 27 C -0.120 4.120 28 C -0.009 4.009 29 C -0.155 4.155 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.391 0.609 39 H 0.034 0.966 40 H 0.045 0.955 41 H 0.263 0.737 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 -25.680 -4.578 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.233 6.233 3 C 0.083 3.917 4 C -0.213 4.213 5 C -0.077 4.077 6 C -0.085 4.085 7 C -0.091 4.091 8 C -0.107 4.107 9 C 0.056 3.944 10 N -0.413 5.413 11 C 0.408 3.592 12 O -0.462 6.462 13 N -0.318 5.318 14 C 0.140 3.860 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.029 4.029 24 C -0.213 4.213 25 C -0.241 4.241 26 C -0.102 4.102 27 C -0.138 4.138 28 C -0.009 4.009 29 C -0.174 4.174 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.226 0.774 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.138 0.862 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.114 0.886 47 H 0.145 0.855 48 H 0.147 0.853 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.882 -25.142 -5.250 28.299 hybrid contribution -1.261 0.584 0.454 1.462 sum -13.143 -24.558 -4.796 28.264 Atomic orbital electron populations 1.23065 0.78396 1.03996 1.01401 1.86087 1.21414 1.26953 1.88834 1.18664 0.92208 0.84085 0.96777 1.21022 1.00249 0.92398 1.07649 1.20939 0.93474 0.97469 0.95819 1.18044 0.93279 0.93123 1.04017 1.21008 0.94231 0.96547 0.97295 1.19682 0.93670 0.95162 1.02201 1.19941 0.99867 0.90805 0.83819 1.45317 1.66631 1.21866 1.07488 1.15815 0.79143 0.80558 0.83664 1.90887 1.53997 1.58313 1.43037 1.47032 1.64563 1.18379 1.01857 1.19195 0.94397 0.75141 0.97296 1.21406 0.94019 0.91960 1.48570 0.92560 1.24925 0.95626 0.98256 0.95345 1.69925 1.17865 1.16912 1.48734 0.86583 0.82087 0.80348 0.78526 1.20316 1.21271 1.20275 1.21322 1.00097 0.97096 0.84390 1.23358 0.99586 1.01067 0.97300 1.23399 0.96279 1.00394 1.04068 1.20863 1.00326 0.91634 0.97331 1.20934 0.92908 0.98039 1.01895 1.17783 0.93531 0.91746 0.97884 1.20139 0.91611 0.97541 1.08121 0.92608 0.88218 0.92579 0.85283 0.84935 0.85128 0.90985 0.91114 0.77413 0.94831 0.93711 0.92735 0.87367 0.86178 0.89163 0.89166 0.88623 0.85466 0.85322 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.80 101.05 0.99 1.12 16 2 O -0.32 -2.80 10.47 -19.38 -0.20 -3.00 16 3 C 0.13 1.21 6.63 -39.58 -0.26 0.95 16 4 C -0.19 -1.62 8.93 -39.79 -0.36 -1.98 16 5 C -0.06 -0.52 9.76 -39.50 -0.39 -0.91 16 6 C -0.08 -0.88 5.74 -106.81 -0.61 -1.50 16 7 C -0.07 -0.77 9.37 -39.49 -0.37 -1.14 16 8 C -0.11 -1.20 5.21 -104.97 -0.55 -1.74 16 9 C 0.18 2.50 5.77 -5.19 -0.03 2.47 16 10 N -0.75 -12.12 5.45 -66.42 -0.36 -12.48 16 11 C 0.71 15.36 8.27 -86.92 -0.72 14.64 16 12 O -0.58 -15.33 15.90 5.30 0.08 -15.25 16 13 N -0.59 -12.75 2.80 -173.17 -0.49 -13.24 16 14 C 0.26 6.82 4.47 -5.19 -0.02 6.79 16 15 C -0.52 -14.71 8.93 -34.44 -0.31 -15.01 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 19 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 C 0.08 1.32 6.17 -67.93 -0.42 0.90 16 24 C -0.18 -2.93 9.73 -26.69 -0.26 -3.19 16 25 C -0.20 -3.08 10.03 -26.69 -0.27 -3.35 16 26 C -0.08 -0.84 9.58 -39.93 -0.38 -1.22 16 27 C -0.12 -1.13 9.77 -39.47 -0.39 -1.52 16 28 C -0.01 -0.09 5.74 -106.84 -0.61 -0.71 16 29 C -0.16 -1.52 9.68 -39.35 -0.38 -1.90 16 30 H 0.06 0.22 7.63 -51.93 -0.40 -0.18 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.23 7.63 -51.93 -0.40 -0.17 16 33 H 0.13 0.76 6.21 -52.49 -0.33 0.43 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 38 H 0.39 5.39 6.13 -40.82 -0.25 5.14 16 39 H 0.03 0.89 6.25 -51.93 -0.32 0.56 16 40 H 0.04 1.35 7.36 -51.93 -0.38 0.97 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.11 1.52 6.30 -51.93 -0.33 1.20 16 43 H 0.12 2.45 6.29 -51.93 -0.33 2.12 16 44 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.10 1.61 7.84 -51.93 -0.41 1.20 16 47 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 48 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 49 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -34.66 406.46 -11.46 -46.12 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.90 Total: 6.29 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -5.43 Total: -5.67 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.11 Total: -51.55 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.12 Total: -18.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.66 -11.46 -46.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072273219.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.876 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds